Silkworm Genome Informatics Database

Gene

KWMTBOMO01985

Annotation

hypothetical_protein_TcasGA2_TC031778_[Tribolium_castaneum]

Location

Bomo_Chr4(-):9133410-9138165 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.252

CDS

ATGGTTTTTACGATAAAATTTTTATCCCTACAAAAAACTGAACTGGAATACGAAGTCGCGATAAGAGGTGAGACCCCCGGTGCTACGGTGGCTGATCTTAGGAAACAGATTAGCAAATTAAGTCAATCTTTTCCTTCAGAAGATATATTATGTTCTCATCTCGAACCCCTAGATGATCTTCAAGCTGTTTTGGACTTGCTGAATAAAGTCAATGCAAGTCTCGAGTCAAGCCCTACTGATAAAAGTACATTATCGCGCATAGAAAATATTTTTCATCACCTTTATCATAGGATCAACAGAATAGTGGTTGATGAAGTAGAGAAGCCGCACTCTGCTTGTAGTAAATTTTTTAAAGAATCCTACGAAAAATTCCAGAAATTAAGCAAAAAGGCAGTTGACCCTCTATTAGTTTGTGTATCTAGTTCAGCATCTGCTTCTGTACCTGGCATTCAGGCACCAATTAATGTCGCTGTTACTTGTGATCGAGGTGTTACTTCAGAACTGAGTAGGCTGAAGTTCGATGGTAAATCATGTGTTCGATCTTTTATTCAACGTGTTTACGAATTTAGCGAGGCTCGTAGCATCCCCGACTCAAAACTTCTCTCATCTGCTACAGAAATATTTACAGATGATGCGCTGCATTGGTTCAGGAGTATTAAGGACCAGGTTTCATCTTGGGATGATCTTGTTGTTCTTTTAAAAAAAGATTTTGATAAAGCAGACTATGATTACCGTTTACTTGCTGAGATTCGTGCTAGGACTCAAGGGGAAACGGAAAATATTACGATATACTTAGCTATTCTCTCGGGTATGTTTGCCCGCCTCTTAAAATCACTTTCGGAAGAGGACAAGCTTGAAATAGTATTACATAATATCCGCCCTTGCTATGCAAGCACTCTAGCCTCTGCTACTGAAATATGTAACATTGATCAATTGAGATCCTTGTGCAGGAATTATGAAATTGTTCAGTCTAGGCTCGTCCACTTTCGAGAACCATCTGCAGCGACTTCCGATACCTTGGCACCAGAATTTGCGTACAAATATGCGACCAAGGCGAAATCGACCTACGACTATAAATCTAGCTATAGTTACAACAAACAGTCGTATCAACCATTAAAAATAAACAGGAACACTAATATTAATCAAAAATATCTACACAGTATTGAAGAAAGTCATCACGATGCAAGGGAAAAATTACCCTATTGTCCTAGGTGCCGCAACAATACGCATAGTTTTAGGGACTGCACTAATACGGAAGTTTTGTGTTTTAAGTGTGGTCGCAAGGGAGTTAAGAAACCTGAGTGTTCACATTGTACTGGCAAACAGGCTCCAAAAAAAAAACTAAATTTGCAGAATTGCAGCAAACCATTGTCCCTGGAACATGTAAAGATACACCGTACCAGCCGGGATGAATGGAAGAATTGGTTAAAAACAATTAGTTTATTTTTTAATGGCTACAAGGTTGCTTCAATTCTGCATACAAAACCAACTAACGATAAAAGACCCTATGTTAATATTAAGATACACGATTTGACAGTTTCCGGCCTTTTGGATTCAGGCTCAGCGGTTACTATTTTAGGCAACAATGCTCATAGTGCATTAGTTAGTCGTGGGCTGGAGTTGTGTACTGATGATAAATTGACTATTATTGCGGCTGGTGGACAAAATCTTAGAAGTATAGGCTATATTAATATGCCAGTGCATTTCGAAAACCAGTTCCACATTATTCAGAGTCACGTAGTTCCAGAAGTTCAATCATCGCTTATTTTAGGGATTGACTTTTGGCACACATTTAAAATTTGCCCGAAGTACTTGAGTTCTCTTCATTTCCCCGGCCCTCCATTGGCTAATTTAGATGTTGGTAGCCCAACCAATTTTTTGCGCTCGTATGATTATTTGGACGAATCACAAAAGGCCGTCGTTGACAATATTACCAAGCAGTTTGAAGAAATATCTTTTGAGCGCAAAGGACTTGGACGCACAAACTTAATTACTCACCACATCGACACGGGGAATTCTCCTCCTGTGAGACAGCGCTACTATAGGCTTTCACCAGAGAAACAGAGAATCCTAGTCGAGCAAGTAGACGAAATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGCTAGTCACTAAAAAAGATGGTCAGCCGCGGTTCTGCTTAGATAGTAGGAAGCTAAACTCTGTTACAAAACGCGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGTATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTCAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCGACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAGCTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAACTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGTCGAACAAAAAATCAACACCTCCCTTCCAGTGGACAGATGAGGCCGACACTGCGTTCAAAAAACTTAAGGAATCTTTGGTCTCGGCACCTGTTCTCTCCTGCCCAAATTATGATCTGCCTTTCGAAGTCCATACAGATGCAAGTAACTATGGGATAGGTGGTATGCTCACACAAACTATTGACGGGAAAGAGCACCCTATAGCGTATATGAGCAAGTCCTTATCGGGGGCCGAAAAGAATTATAGCATTACCGAACGTGAGACCTTAGCTGTTCTCGTGGCTCTCGAACACTGGCGTTGCTATCTGGAGAACGGAAAGACATTCACAGTTTACACAGACCACAGCGCACTTAAGTGGTTCCTTTCCTTGAACAATCCTACGGGTAGGCTTGCACGTTGGGGAGTTCGATTATCGTCGTTTGATTTTGAAATCAAACACCGCCGCGGTGTAGACAATGTGATTCCCGACGCTTTGTCTAGAGCTGTCCCAGTCAATACTATCACTACTGCTAAATCACTCACGACTTCTAGTGATGATTGGTATAAGACCCTTTATAATAATTGTTTGACCCAGCCTGTACATTATCCAAATCATCATATCAAAAATGACGCTCTTTTCCGTTGTAGTAAGAATAAGTGTTATCTCACAAATGAATTTTCGTGGAAAGAGGTAGTTCCTTCAGAACTTAGAAACACTGTCATTGCTGAGAATCATAGTGAGCCAACAGCTGGTCATTTGGGTATTTTTAAGACCTACAGACGTATCGCCCTTAGATACTATTGGCCAGGCATGTATCGAGACGTAGCAAATTTCGTAGGTTCATGTTCCACTTGTCTCAAGTACAAAATTCAAAACCATGCTACTCTTGGAGAAATGGGTCGCCCCAAGCAGTGCTCTCGACCGTATCAGATGTTATCGATTGATTTAATGGGTCCTTTGCCTGTGACTCGAAAACAAAATTGCCATATTCTAGTGATAACTTGCTGTTTTTCGAAATTTTGTCACATTTATCCAATTAAAAAGGCAACTTCAGACATTATAGTCCGAATTTTAGAAGAGCAAATTTTCCTCGTTCATGGTGTGCCTCAAACAATTTTTCTCGATAATGGCTCTCAGTTCATTAGTAGTCATACAAATGCACTATTCAAAAAGTATAACATACCAAACGTATTTTTCACGCCAAAATATACCCCCCAGGTGAATACCGTAGAGCGGTATAACAAAACAATTATTACTTGTATTTCTACGTTTGTAGATAGTGATCATCGATCATGGGATACTTTTATTCCTAGTGTCCAGTTTGCCATTAATAATTCGGTTAACGAGGCTGCTGGTTTCACTCCGTCATTCCTTGTCTTTGGCAGAGAACTAGTAGTATGTGGCTCTCATTATACTGATATTGATTTGGGTGATCAAGTTTTGTTTCTACCTCGAGATGTGTATGCCGAAAACCTAGGGTGTTTGAGCTCCATCTTCGATCAAGTTCAGAAATCTCTATATCACGCACACGTAAAAAACACTGCTAACTATAATTTACGCAGAAAGCCCTTTGAATTTAATGTAGGAGATACTGTTTATAAACGCGCTTACGTCCTGAGTGACAAAGATAAGTATTTTAGTAAGAAGTTAGCACCGAAATATATCAAGTGCAAAGTTGTCGAAAAACTCTCACCACTTGTCTACGTTCTAGAAGACATGTCGGGTAAAAACATAGGCACTTGGCATATTAAAGACTTGAAAATATTAGGTCAACACTCATAG

Protein

MVFTIKFLSLQKTELEYEVAIRGETPGATVADLRKQISKLSQSFPSEDILCSHLEPLDDLQAVLDLLNKVNASLESSPTDKSTLSRIENIFHHLYHRINRIVVDEVEKPHSACSKFFKESYEKFQKLSKKAVDPLLVCVSSSASASVPGIQAPINVAVTCDRGVTSELSRLKFDGKSCVRSFIQRVYEFSEARSIPDSKLLSSATEIFTDDALHWFRSIKDQVSSWDDLVVLLKKDFDKADYDYRLLAEIRARTQGETENITIYLAILSGMFARLLKSLSEEDKLEIVLHNIRPCYASTLASATEICNIDQLRSLCRNYEIVQSRLVHFREPSAATSDTLAPEFAYKYATKAKSTYDYKSSYSYNKQSYQPLKINRNTNINQKYLHSIEESHHDAREKLPYCPRCRNNTHSFRDCTNTEVLCFKCGRKGVKKPECSHCTGKQAPKKKLNLQNCSKPLSLEHVKIHRTSRDEWKNWLKTISLFFNGYKVASILHTKPTNDKRPYVNIKIHDLTVSGLLDSGSAVTILGNNAHSALVSRGLELCTDDKLTIIAAGGQNLRSIGYINMPVHFENQFHIIQSHVVPEVQSSLILGIDFWHTFKICPKYLSSLHFPGPPLANLDVGSPTNFLRSYDYLDESQKAVVDNITKQFEEISFERKGLGRTNLITHHIDTGNSPPVRQRYYRLSPEKQRILVEQVDEMLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLNSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGDMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLSNKKSTPPFQWTDEADTAFKKLKESLVSAPVLSCPNYDLPFEVHTDASNYGIGGMLTQTIDGKEHPIAYMSKSLSGAEKNYSITERETLAVLVALEHWRCYLENGKTFTVYTDHSALKWFLSLNNPTGRLARWGVRLSSFDFEIKHRRGVDNVIPDALSRAVPVNTITTAKSLTTSSDDWYKTLYNNCLTQPVHYPNHHIKNDALFRCSKNKCYLTNEFSWKEVVPSELRNTVIAENHSEPTAGHLGIFKTYRRIALRYYWPGMYRDVANFVGSCSTCLKYKIQNHATLGEMGRPKQCSRPYQMLSIDLMGPLPVTRKQNCHILVITCCFSKFCHIYPIKKATSDIIVRILEEQIFLVHGVPQTIFLDNGSQFISSHTNALFKKYNIPNVFFTPKYTPQVNTVERYNKTIITCISTFVDSDHRSWDTFIPSVQFAINNSVNEAAGFTPSFLVFGRELVVCGSHYTDIDLGDQVLFLPRDVYAENLGCLSSIFDQVQKSLYHAHVKNTANYNLRRKPFEFNVGDTVYKRAYVLSDKDKYFSKKLAPKYIKCKVVEKLSPLVYVLEDMSGKNIGTWHIKDLKILGQHS

Uniprot

A0A1Y1K0I6 A0A224XDN8 A0A023EY78 A0A146KR86 A0A139WG74 A0A139W930 + More
A0A1W7R6C1 A0A3B1JJM2 A0A3B3BX27 W4VRC4 W4VRD9 A0A3Q0IWW1

Pubmed

28004739 25474469 26823975 18362917 19820115 25329095 + More
29451363

EMBL

GEZM01099692 JAV53185.1 GFTR01008518 JAW07908.1 GBBI01004690 JAC14022.1 + More
GDHC01020090 JAP98538.1 KQ971350 KYB26855.1 KQ972733 KXZ75794.1 GEHC01000931 JAV46714.1 GANO01004068 JAB55803.1 GANO01004067 JAB55804.1

Proteomes

UP000007266 UP000018467 UP000261560 UP000079169

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF03732   Retrotrans_gag
PF00077   RVP

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001969   Aspartic_peptidase_AS
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR041373   RT_RNaseH
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR018061   Retropepsins
IPR005162   Retrotrans_gag_dom
IPR003034   SAP_dom
IPR001995   Peptidase_A2_cat

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A1Y1K0I6 A0A224XDN8 A0A023EY78 A0A146KR86 A0A139WG74 A0A139W930 + More
A0A1W7R6C1 A0A3B1JJM2 A0A3B3BX27 W4VRC4 W4VRD9 A0A3Q0IWW1

PDB

4OL8 E-value=1.72779e-71, Score=690

KEGG

102466074 no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0015074 GO:0003676 GO:0004190 GO:0008270 GO:0005634 GO:0006508 GO:0008168 GO:0005737 GO:0016876 GO:0043039 GO:0004651

Length:

1518

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00566999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00014

outside

1 - 1518

Pi

315.610085

Theta

206.194948

Tajima's D

1.928407

CLR

0.74685

CSRT

0.869106544672766

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree