Gene

KWMTBOMO01982

Pre Gene Modal

BGIBMGA005906

Annotation

PREDICTED:_rho_guanine_nucleotide_exchange_factor_7_[Papilio_xuthus]

Location

Bomo_Chr4(-):9085297-9094895      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.394

CDS

ATGTCAGCAGAAAATTGCTTGGTTAAGGCAATATACTCTTTTAAAGGTAAAAACAATGATGAATTATGTTTCAAAAAAGGCGATATTATTACTGTCACGCAAAAGGAAGAAGGAGGATGGTGGGAAGGCACTCTGGGTGAAACTACAGGCTGGTTCCCAAGCAACTATGTTACTGAATATAAAGATGCATCAGGTTCAGTGACAACATCACCTATACGAGCTGTGTCTGAGATACAGGCATTCCGAAATGTGGTGCTGAAAGACATAATAGATTCTGAAAAGGCCCATGTTGCAGAAATGCAGGGTCTTGTCACCAACTTCTTACATCCTCTGGAAAAAAGTGAAATGCTAACTAAAGATGAATTCAAACAATTGACCGGCAATATAAATGAGGTCTTGCAGATTCATGAACAGTTCTTAGGGCTGTTAGAAGAAAGTGCAACCAAAACAGGTCCAGATCAGAGAGTAGGAGGATTGTTTTTACAGTGGGCACCAAAAATTAAAACAGTACACCAAACTTACTGTGGTGGACATCCAAAGGCAGTGTGTATCCTTGATAAGTATAAGGAGGACTTAAACACGTGGATGGAAAATGCAGGTGCAGTGTGTCCAGGGGTCCTTGTTTTAACAGCTGGTCTTTCAAAGCCATTTAGACGTCTCGGCAAATATCCAGCTATGCTACAAGAATTGGCAAGACATGTCCACGAAGCCCACCCTGACCGGGGCGATACTCATCGTGCATCTGTTGTCTACAAAGATATTGCGAGTGCTTGTGCGGCATTGCGACGTCAAAAGGAGTTAGAATTACAAGTTATAACCGGAGAAGTTCGTGGCTGGCCCGGGGGTGAACTAGCCTCATTGGGTGACGTGTTACATATGGGCAGCGTGGCAGTGGGCCCGTCCCATCAGGACCGCTACCTTGTACTCTTCCCATCAGCGCTGTTATTACTTTCAGTTAGCAAAAGAGTATCTGCATTTGTGTATGAGGGATGTCTTCCACTGACAGGCATCACAGTGTGTAAATTAGATGATACTGAAACAAGAAAAAATGCATTTGAAATTAGTGGTCCCATGATAGACACTATAGTGGCAGTGTGCCAAACAAAAGCTGAGGCTGACAATTGGGTCAGTTTGTTACAAAAGCATTCTAACACGAACAGTCCAACACACGAGCCTGGACAACCGCAGTCATTACCTCATATGGCCACGAGCGAGAATAATAACTCTGATTTATCTGGTGGTTTAACGAGCCACAAACGATCACACTCATTCAACAATCATCAAAGCTACACACAACACGCTCAGCAAACGCAGAAAAACAAACAAAAAAATCAATCAGCGCGTTGGCTGCTCAACTCTTTCGACTCCCTCGACCAGTCACCCGCCAAATCTGATAACGGTTCCATCGCAAAGAAATTCTCCTCTGTTGACTTCATCGACACCACGGATTCGACTTACACTAATAAAGGTTGGAGCATAACTTGTTTACGGCCTGCACCACCGCTCCGGCCCCAATCCTTCTCGGTGGGATCGGACGAGAACATCGGGCCGACCCACCCCTACGCGCCGCACCAACGGAAATCCAATTCGTACGAAGAAGATGCCCTCATCCTCAAAGTCATCGAAGCTTATTGTACTTCGGCTCGGTGCAGAAATGCCGTAAGCTCCGTGGATTGCGGCCACTTATCTCTCGGTAAAGTACAGTATCACGCACCCGCTACTAACATAGACGAGTTTAACTACACTAAAATGTCGCCCGTACAACGAAGCAAAACGCCTGACCGTCCGGAATGTACGAAACCCACCAAAGTGAAACGAAACAAAAGCTCTTCCGCTGCGGACGCGTACTTGTACCGAGGGCCGGAAGCTAGAAGACTGTTGTTGTGCGACCGAAAGTATGACATGAACCGGTCTAATCCCAACCTGCGTCAGCATTGGGACGAGCGGCCCAGTGTCCCGGCGTGCGGCTCCCAGCCCAGCCTCGCCGCCCCGCGCTCCTCCACCTGGTGCTGCGGCACTTTCGTCAAACATCTCACTAAATCTCACCATTTCGATTGA

Protein

MSAENCLVKAIYSFKGKNNDELCFKKGDIITVTQKEEGGWWEGTLGETTGWFPSNYVTEYKDASGSVTTSPIRAVSEIQAFRNVVLKDIIDSEKAHVAEMQGLVTNFLHPLEKSEMLTKDEFKQLTGNINEVLQIHEQFLGLLEESATKTGPDQRVGGLFLQWAPKIKTVHQTYCGGHPKAVCILDKYKEDLNTWMENAGAVCPGVLVLTAGLSKPFRRLGKYPAMLQELARHVHEAHPDRGDTHRASVVYKDIASACAALRRQKELELQVITGEVRGWPGGELASLGDVLHMGSVAVGPSHQDRYLVLFPSALLLLSVSKRVSAFVYEGCLPLTGITVCKLDDTETRKNAFEISGPMIDTIVAVCQTKAEADNWVSLLQKHSNTNSPTHEPGQPQSLPHMATSENNNSDLSGGLTSHKRSHSFNNHQSYTQHAQQTQKNKQKNQSARWLLNSFDSLDQSPAKSDNGSIAKKFSSVDFIDTTDSTYTNKGWSITCLRPAPPLRPQSFSVGSDENIGPTHPYAPHQRKSNSYEEDALILKVIEAYCTSARCRNAVSSVDCGHLSLGKVQYHAPATNIDEFNYTKMSPVQRSKTPDRPECTKPTKVKRNKSSSAADAYLYRGPEARRLLLCDRKYDMNRSNPNLRQHWDERPSVPACGSQPSLAAPRSSTWCCGTFVKHLTKSHHFD

Uniprot

S4NXJ5   A0A2A4K0M4   A0A2W1BLF7   V5GMC4   A0A1W4WZJ3   A0A1W4XA26   + More
A0A1W4WZE8   U5EZR8   A0A0K8VRM0   A0A0A1X832   A0A1W4VYE9   A0A0R3NUC5   A0A0P8XVQ3   B4PBJ9   A0A0Q9WR09   A0A0R3NUL6   A0A0K8UVU8   B4IFB4   B4LT62   O62527   C3KGL5   Q9VIN1   Q8SYV1   B3NM22   A0A1W4VKE6   Q17NI1   A0A0P9BNJ5   A0A2M4CRP2   A0A0R3NUA7   A0A0R1DPL4   B0W4Z9   A0A3B0K713   B4MZ99   A0A2M4CL17   M9PGB1   A0A1S4EWN5   A8DZ20   A0A2M4AF36   A0A0Q5VW48   A0A087ZI31   A0A1S4GX77   A0A182HBC6   A0A1I8Q7B6   A0A1I8NED6   A0A1I8NEC3   A0A1Q3FCL0   A0A1Q3FCT9   A0A0P4WHK8  

Pubmed

23622113    28756777    25830018    15632085    17994087    17550304    + More
9073073    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    20920257    12364791    26483478    25315136   

EMBL

GAIX01012137    JAA80423.1    NWSH01000276    PCG77825.1    KZ150090    PZC73696.1    + More
GALX01003207    JAB65259.1    GANO01000281    JAB59590.1    GDHF01014806    GDHF01010826    JAI37508.1    JAI41488.1    GBXI01011748    GBXI01007015    JAD02544.1    JAD07277.1    CH379061    KRT04728.1    CH902620    KPU73426.1    CM000158    EDW90513.1    CH963913    KRF98659.1    KRT04724.1    GDHF01021520    GDHF01009355    JAI30794.1    JAI42959.1    CH480833    EDW46336.1    CH940649    EDW64904.1    AJ224676    CAA12058.1    BT082080    AE014134    ACP44282.1    ACZ94307.1    AAF53886.1    AAF53887.2    AY071298    AAL48920.1    CH954179    EDV54558.1    CH477199    EAT48236.1    KPU73424.1    GGFL01003809    MBW67987.1    KRT04722.1    KRJ99227.1    DS231840    EDS34565.1    OUUW01000006    SPP81809.1    EDW77372.2    GGFL01001747    MBW65925.1    AGB93157.1    ABV53696.2    GGFK01006069    MBW39390.1    KQS61838.1    AAAB01008964    JXUM01031771    JXUM01031772    JXUM01031773    KQ560935    KXJ80279.1    GFDL01009730    JAV25315.1    GFDL01009634    JAV25411.1    GDRN01072504    JAI63539.1   

Proteomes

UP000218220    UP000192223    UP000192221    UP000001819    UP000007801    UP000002282    + More
UP000007798    UP000001292    UP000008792    UP000000803    UP000008711    UP000008820    UP000002320    UP000268350    UP000069940    UP000249989    UP000095300    UP000095301   

PRIDE

O62527    Q9VIN1    Q8SYV1    A8DZ20   

Pfam

PF14604   SH3_9        + More
PF00621   RhoGEF
PF00018   SH3_1
PF07653   SH3_2
PF16523   betaPIX_CC

Interpro

IPR036028   SH3-like_dom_sf        + More
IPR000219   DH-domain       
IPR001849   PH_domain       
IPR011993   PH-like_dom_sf       
IPR035899   DBL_dom_sf       
IPR001452   SH3_domain       
IPR032409   GEF_CC       

SUPFAM

SSF48065   SSF48065        + More
SSF50044   SSF50044       

Gene 3D

1.20.900.10     2.30.29.30    

CDD

cd00160  RhoGEF

ProteinModelPortal

S4NXJ5   A0A2A4K0M4   A0A2W1BLF7   V5GMC4   A0A1W4WZJ3   A0A1W4XA26   + More
A0A1W4WZE8   U5EZR8   A0A0K8VRM0   A0A0A1X832   A0A1W4VYE9   A0A0R3NUC5   A0A0P8XVQ3   B4PBJ9   A0A0Q9WR09   A0A0R3NUL6   A0A0K8UVU8   B4IFB4   B4LT62   O62527   C3KGL5   Q9VIN1   Q8SYV1   B3NM22   A0A1W4VKE6   Q17NI1   A0A0P9BNJ5   A0A2M4CRP2   A0A0R3NUA7   A0A0R1DPL4   B0W4Z9   A0A3B0K713   B4MZ99   A0A2M4CL17   M9PGB1   A0A1S4EWN5   A8DZ20   A0A2M4AF36   A0A0Q5VW48   A0A087ZI31   A0A1S4GX77   A0A182HBC6   A0A1I8Q7B6   A0A1I8NED6   A0A1I8NEC3   A0A1Q3FCL0   A0A1Q3FCT9   A0A0P4WHK8  

PDB

1BY1     E-value=4.39385e-45,     Score=459

KEGG

101745236    K13710 Rho guanine nucleotide exchange factor 7 | (RefSeq) uncharacterized LOC101745236

GO

GO:0035023   GO:0005089   GO:0097482   GO:0060090   GO:0046620   GO:0050807   GO:0035332   GO:0005085   GO:0043547   GO:0005515   GO:0008239   GO:0008168   GO:0005737   GO:0016876   GO:0043039   GO:0004651   GO:0005634  

Length:

685

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13579

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00681

outside

1  -  685

 

 

Pi

254.560226

Theta

194.715244

Tajima's D

1.048742

CLR

0

CSRT

0.668516574171291

Interpretation

Uncertain