Gene

KWMTBOMO01979

Pre Gene Modal

BGIBMGA014036

Annotation

PREDICTED:_transcription_initiation_factor_TFIID_subunit_5_[Amyelois_transitella]

Location

Bomo_Chr4(-):8995762-9004631      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.433 Extracellular   Reliability : 1.176

CDS

ATGAGTGAGAAATCAACCCCACTGCTGGCTGTTTTACAGTTACTTAGAAAGTACAATCTAAAGAGTACAGAAGACATTTTAAGAAAAGAAGCTAGTCTAGGAGACGTCGAATGTGAAAGCTTAGATCTTCCTGAAGTAGAACTAGCGAGCATTCTTACCGCTCATCACACTGAAAGCGACCCCTTTACGTACGAATTGGCGTACGACGGTCTAAAAAAATTTATTGAAAATTCTTTAGATTTGTACAAGTATGAATTGTCCACACTATTGTATCCTGTGTTTGTTCACATGTATCTTCTGTTGATACTGTATGATCATGTTGAACACGCTGTCAGTTTCTTGGAAAAGTTTGGAATAGAACAAGAAGATTACTATCAAGAGGACTTGAAAAAGTTGTCTATTGTAAAACATAAGGATCAGATAAAAGGAAATGAACTAGCAGAAATATACAGCACAAATAAATTTACAGTTCAGTTATCAAGAGATGCATCTTCACAACTGAAACGTTACTTACACGAACAGAAAAATTCCTCAGTAATAATAAATATAATAAATAATCATATACAAATCGAAGTCCATGATGGTCCAGGAAGAACTCAAGCACAAGTTCGAGCTACAGCTGGAGGGGTACTTGGAGAACCAATGAAAAGTGAAAATCGCACCAAAGTGTATTATGGGCTCCTGAAAGAGCCCGATATTCAAGTTCTACCGGCTCCGGTAGAAGACGAAGAAGAAGTAGAAGAAACCCCTGACAAACCAAAAAAGAAAAAAGCGAAAAAAGATAATCTTTTTATGAAGAAACCAAAATCTGACCCAAATGCACCTCCTAATGACAGGATCCCTCTACCAGATCTAAAAGAAATTGATAAAGTAGAGAAAGGCAAAGCACTCAGAGAAGCATCAAAACGTGTTCAGCTAGGACCAGACAGCTTGCCCTCTATTTGTTTCTATACATTACTGAACAGCGGACATACTGCAATTAGTTGTGATATTTGTGACGATTCCACCCTTTTGGCTGTGGGATTTAATAACTCAAACATAAAGGTATGGACATTGACTCCCATTAAACTGCGAGGAATGAAATCTGCAGAAAAACTACAAGATATAGACAGGGAAGCAGGTGATGTACTCGTGAGGATGATGGAGGAAAAGGACCGTGATACGTGCCGCAACCTTTTTGGGCACTCCGGCCCCGTTTATAAAGTTGCATTTGATCCTTTTAAAACAATGCTGCTTTCGTGCTCTGAGGATACAACTGTGAGATTGTGGTCACTACAGTGTTGGACGTGTCTTGTTGTGTACCGTGGACACGTATGGCCGGTCTGGGATGTGCGCTGGTCCCCTCATGGCCACTACTTTGCTTCCAGCGGCCATGATCGTACTGCTCGACTATGGGCGACTGATCACCACCTTCCACTGAGGATATTTATAGGACATTATTCGGATGTAGATTGTATTCAGTTCCACCCGAACTCAAATTATATAGCAACTGGATCTAGCGACAGAACAGTTCGACTGTGGGATTGTTTAACTGGTAGTCAAGTTCGAATAATGACAGGACATAAGTCAACCATTTTCACGTTGGCCTTTTCCGTTTGTGGAAGATGGATTGCTTCTGGTGGCAGTGGTGGAGATATGATGGTTTGGGATTTATCTACTGGGGGTCCAGCCGCTTCGTTACCCCCGGCACATACTGCTCCCATACACGCCTTAGCCTTCAGTCGTGATGGAACAGTTCTATCGTCAGGCTCATTGGATTGTACAATAAAATTGTGGGACTTCACAGCCATAACAGACGAATCTCCCATTGAAGAAACTCTAAATAACCCTATACCAAAAGAAGACAAATATCTATTACAATCATTTGCCACTAAAAGTTCCCCTGTAAAAGGCTTGCATTTTACAAGACGCAATTTACTACTTGCTGTTGGCACATATGAGAGCAGTGCTTAA

Protein

MSEKSTPLLAVLQLLRKYNLKSTEDILRKEASLGDVECESLDLPEVELASILTAHHTESDPFTYELAYDGLKKFIENSLDLYKYELSTLLYPVFVHMYLLLILYDHVEHAVSFLEKFGIEQEDYYQEDLKKLSIVKHKDQIKGNELAEIYSTNKFTVQLSRDASSQLKRYLHEQKNSSVIINIINNHIQIEVHDGPGRTQAQVRATAGGVLGEPMKSENRTKVYYGLLKEPDIQVLPAPVEDEEEVEETPDKPKKKKAKKDNLFMKKPKSDPNAPPNDRIPLPDLKEIDKVEKGKALREASKRVQLGPDSLPSICFYTLLNSGHTAISCDICDDSTLLAVGFNNSNIKVWTLTPIKLRGMKSAEKLQDIDREAGDVLVRMMEEKDRDTCRNLFGHSGPVYKVAFDPFKTMLLSCSEDTTVRLWSLQCWTCLVVYRGHVWPVWDVRWSPHGHYFASSGHDRTARLWATDHHLPLRIFIGHYSDVDCIQFHPNSNYIATGSSDRTVRLWDCLTGSQVRIMTGHKSTIFTLAFSVCGRWIASGGSGGDMMVWDLSTGGPAASLPPAHTAPIHALAFSRDGTVLSSGSLDCTIKLWDFTAITDESPIEETLNNPIPKEDKYLLQSFATKSSPVKGLHFTRRNLLLAVGTYESSA

Uniprot

H9JWX2   A0A2A4K1A0   A0A2H1X0B5   A0A2W1BHE8   A0A212ELQ3   A0A194RGS6   + More
I4DKH6   A0A194PM50   A0A067QZS3   A0A2J7PLN0   A0A2J7PLN8   A0A1B0CJD6   A0A2A3ELK7   A0A088A129   A0A1L8DGY0   A0A1B6JIZ9   A0A0J7KDZ8   A0A232EF34   A0A1B6DEK0   E2C4F8   K7IZW9   A0A146MEU0   E2A7B5   A0A0V0G8P2   A0A182HFB3   A0A182N2H0   A0A084VIE5   F4WQV2   A0A182YJD1   Q173R0   A0A1Q3F438   A0A182PC89   A0A182T1V8   A0A1S4FFG7   A0A182R706   A0A182JTR5   A0A182M4W7   A0A158NTI8   E0VEZ5   B0WAT2   A0A182QCP7   A0A182WEI4   A0A151X3D8   A0A195EG06   A0A0M9A0M7   A0A151INR9   A0A336LNL9   A0A0P5U5C6   Q7PZ11   A0A0P5CSM7   A0A0P5U041   A0A182XKM2   A0A182V284   A0A182L4C0   A0A0P5XL53   A0A182TJL4   A0A182HGX8   A0A0N8A234   A0A182IVK7   E9FZR3   A0A0P6INE2   A0A1B6H3R1   A0A2M4AN40   W5JUP4   A0A3L8DJ74   A0A0P4XTX4   A0A0P5DHX6   A0A182FUT0   A0A195BRP9   A0A195ESN7   D6WNI9   T1HS24   A0A0C9RW60   A0A1Y1MMD9   A0A164UJL5   A0A1J1J8S1   A0A1B0DNX3   A0A0N8AC08   A0A026W853   A0A0L7QUA4   A0A3G2KX35   N6U9K1   A0A2J7PLN3   A0A154P2V5   A0A2L2YKU4   A0A3Q0JLC4   U4UGQ1   A0A2R5LLY4   A0A0A9YNJ7   B7QDX5   A0A131Y1H0   A0A131YK82   L7MLW4   A0A224Z1P1   A0A1I8QB31   A0A0P4W488   A0A1A9W6F2   A0A1A9ZHY3   A0A1B0BZC7  

Pubmed

19121390    28756777    22118469    26354079    22651552    24845553    + More
28648823    20798317    20075255    26823975    26483478    24438588    21719571    25244985    17510324    21347285    20566863    12364791    14747013    17210077    20966253    21292972    20920257    23761445    30249741    18362917    19820115    28004739    24508170    30329069    23537049    26561354    25401762    26830274    25576852    28797301   

EMBL

BABH01042586    BABH01042587    BABH01042588    NWSH01000276    PCG77839.1    ODYU01012447    + More
SOQ58751.1    KZ150090    PZC73691.1    AGBW02013994    OWR42424.1    KQ460398    KPJ15131.1    AK401794    BAM18416.1    KQ459601    KPI93814.1    KK853149    KDR10646.1    NEVH01024424    PNF17244.1    PNF17242.1    AJWK01014499    KZ288215    PBC32645.1    GFDF01008365    JAV05719.1    GECU01033538    GECU01026235    GECU01008536    JAS74168.1    JAS81471.1    JAS99170.1    LBMM01009068    KMQ88416.1    NNAY01005138    OXU16957.1    GEDC01013228    JAS24070.1    GL452462    EFN77195.1    GDHC01001117    JAQ17512.1    GL437329    EFN70612.1    GECL01002487    JAP03637.1    JXUM01036744    KQ561105    KXJ79684.1    ATLV01013354    KE524854    KFB37739.1    GL888275    EGI63465.1    CH477418    EAT41277.1    GFDL01012724    JAV22321.1    AXCM01001816    ADTU01025973    DS235100    EEB11969.1    DS231875    EDS41798.1    AXCN02001071    AXCN02001072    KQ982562    KYQ54901.1    KQ978983    KYN26807.1    KQ435776    KOX74930.1    KQ976919    KYN07085.1    UFQT01000092    SSX19596.1    GDIP01147593    GDIP01121720    JAL81994.1    AAAB01008986    EAA00089.4    GDIP01167381    JAJ56021.1    GDIP01119628    JAL84086.1    GDIP01070449    JAM33266.1    APCN01002367    GDIP01190065    JAJ33337.1    GL732528    EFX87221.1    GDIQ01002871    JAN91866.1    GECZ01000466    JAS69303.1    GGFK01008870    MBW42191.1    ADMH02000317    ETN66998.1    QOIP01000007    RLU20223.1    GDIP01240827    JAI82574.1    GDIP01157236    JAJ66166.1    KQ976424    KYM88616.1    KQ981993    KYN30927.1    KQ971343    EFA04573.1    ACPB03003000    GBYB01005128    GBYB01012006    JAG74895.1    JAG81773.1    GEZM01030354    GEZM01030349    JAV85605.1    LRGB01001581    KZS11419.1    CVRI01000070    CRL07321.1    AJVK01007807    AJVK01007808    GDIP01162273    JAJ61129.1    KK107347    EZA52240.1    KQ414735    KOC62223.1    MH712878    AYN64385.1    APGK01037418    KB740948    ENN77326.1    PNF17243.1    KQ434792    KZC05460.1    IAAA01035012    LAA08729.1    KB632288    ERL91528.1    GGLE01006414    MBY10540.1    GBHO01010936    GBRD01010238    JAG32668.1    JAG55586.1    ABJB010754237    ABJB010896936    ABJB010930261    DS916876    EEC17047.1    GEFM01003920    JAP71876.1    GEDV01009707    JAP78850.1    GACK01000845    JAA64189.1    GFPF01012622    MAA23768.1    GDRN01073399    JAI63398.1    JXJN01023092   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000027135    + More
UP000235965    UP000092461    UP000242457    UP000005203    UP000036403    UP000215335    UP000008237    UP000002358    UP000000311    UP000069940    UP000249989    UP000075884    UP000030765    UP000007755    UP000076408    UP000008820    UP000075885    UP000075901    UP000075900    UP000075881    UP000075883    UP000005205    UP000009046    UP000002320    UP000075886    UP000075920    UP000075809    UP000078492    UP000053105    UP000078542    UP000007062    UP000076407    UP000075903    UP000075882    UP000075902    UP000075840    UP000075880    UP000000305    UP000000673    UP000279307    UP000069272    UP000078540    UP000078541    UP000007266    UP000015103    UP000076858    UP000183832    UP000092462    UP000053097    UP000053825    UP000019118    UP000076502    UP000079169    UP000030742    UP000001555    UP000095300    UP000091820    UP000092445    UP000092460   

PRIDE

H9JWX2   

Pfam

PF04494   TFIID_NTD2        + More
PF00400   WD40
PF03801   Ndc80_HEC
PF09431   DUF2013
PF00018   SH3_1
PF14604   SH3_9

Interpro

IPR017986   WD40_repeat_dom        + More
IPR037264   TFIID_NTD2_sf       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037783   Taf5       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR007582   TFIID_NTD2       
IPR020472   G-protein_beta_WD-40_rep       
IPR006594   LisH       
IPR038273   Ndc80_sf       
IPR005550   Kinetochore_Ndc80       
IPR018556   DUF2013       
IPR036028   SH3-like_dom_sf       
IPR035514   SPIN90_SH3       
IPR001452   SH3_domain       

SUPFAM

SSF160897   SSF160897        + More
SSF50978   SSF50978       
SSF50044   SSF50044       

Gene 3D

1.25.40.500     2.130.10.10     1.10.418.30    

CDD

cd08044  TAF5_NTD2
cd11849  SH3_SPIN90

ProteinModelPortal

H9JWX2   A0A2A4K1A0   A0A2H1X0B5   A0A2W1BHE8   A0A212ELQ3   A0A194RGS6   + More
I4DKH6   A0A194PM50   A0A067QZS3   A0A2J7PLN0   A0A2J7PLN8   A0A1B0CJD6   A0A2A3ELK7   A0A088A129   A0A1L8DGY0   A0A1B6JIZ9   A0A0J7KDZ8   A0A232EF34   A0A1B6DEK0   E2C4F8   K7IZW9   A0A146MEU0   E2A7B5   A0A0V0G8P2   A0A182HFB3   A0A182N2H0   A0A084VIE5   F4WQV2   A0A182YJD1   Q173R0   A0A1Q3F438   A0A182PC89   A0A182T1V8   A0A1S4FFG7   A0A182R706   A0A182JTR5   A0A182M4W7   A0A158NTI8   E0VEZ5   B0WAT2   A0A182QCP7   A0A182WEI4   A0A151X3D8   A0A195EG06   A0A0M9A0M7   A0A151INR9   A0A336LNL9   A0A0P5U5C6   Q7PZ11   A0A0P5CSM7   A0A0P5U041   A0A182XKM2   A0A182V284   A0A182L4C0   A0A0P5XL53   A0A182TJL4   A0A182HGX8   A0A0N8A234   A0A182IVK7   E9FZR3   A0A0P6INE2   A0A1B6H3R1   A0A2M4AN40   W5JUP4   A0A3L8DJ74   A0A0P4XTX4   A0A0P5DHX6   A0A182FUT0   A0A195BRP9   A0A195ESN7   D6WNI9   T1HS24   A0A0C9RW60   A0A1Y1MMD9   A0A164UJL5   A0A1J1J8S1   A0A1B0DNX3   A0A0N8AC08   A0A026W853   A0A0L7QUA4   A0A3G2KX35   N6U9K1   A0A2J7PLN3   A0A154P2V5   A0A2L2YKU4   A0A3Q0JLC4   U4UGQ1   A0A2R5LLY4   A0A0A9YNJ7   B7QDX5   A0A131Y1H0   A0A131YK82   L7MLW4   A0A224Z1P1   A0A1I8QB31   A0A0P4W488   A0A1A9W6F2   A0A1A9ZHY3   A0A1B0BZC7  

PDB

6F3T     E-value=2.41433e-165,     Score=1496

KEGG

101746127    K03130 transcription initiation factor TFIID subunit 5 | (RefSeq) transcription initiation factor TF

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0005669   GO:0003743   GO:0004402   GO:0005515   GO:0005581   GO:0016020   GO:0051013   GO:0008168   GO:0005737   GO:0016876   GO:0043039   GO:0004651   GO:0005634  

PANTHER

PTHR19879:SF4  

Length:

650

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.4431

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.06761

outside

1  -  650

 

 

Pi

242.770459

Theta

187.323613

Tajima's D

0.87117

CLR

0.208409

CSRT

0.622068896555172

Interpretation

Uncertain