Gene

KWMTBOMO01978

Pre Gene Modal

BGIBMGA014034

Annotation

Integrator_complex_subunit_10_[Operophtera_brumata]

Location

Bomo_Chr4(+):8993892-8995739      View in EpiBrowser

Full name

Integrator complex subunit 10      

Location in the cell

PlasmaMembrane   Reliability : 2.409

CDS

ATGCCTGGCGTTGAAGCAATATTATCAGACGAAGATTTTATAATTGCAAAAGCAAAAGATGCTCAGAAATCTGACATTTTTGCAGCAAAAGCATGGATGCTCACAGCGAAAACATTATTTCCGACGAATTTTAAAATTCAGTTTGAGGCATATTTGATGGAGAAACAGTCTGGAAATGTACAAGAAGCCGCAGAATGTTTCAGTTCTTTAATGCTTTCAAGACAAAATATGACTGCGCTTTTACCAGAAATTTCTGCAATCGCTAATGCTCTTAGATCAGCGGAAGGTAGCTTTTTGTGTCAGATGTTTGATCATATTTGTCCCGATATACAGTTAACAATATTGAAGACAAGTGTAGAAAACAGTGATGATACGACAGAGCATTGTAAATTACTTGTGTTATTATTAAAAAAGTTTCCACAACTAGGAGTGGATAGTTTGGTTAAAACTTTAATTAATGCTGAGAAATTTTTCTACGACAATAGATATGCTAGGCTTCTAGTGGTAGAAACATTGCCATTGCTGAGTTCCTTGGAGTCACCAAGGTTGTTACAAAGATTGCTAATTAAAGCTATTGATTTTTATAATTCTTATGTATATGATCAAACTGAACATGACATATCTGACCCATGGCAAAGATTGTATGGAGTGTTGGATTTATTGGGAAGACAGCTTTGTTGGGACCCTTATCTTGTTAATTACAGCAATAGCCTGAACAAAGAAGCATATTTTCAAAAATTGTTGACATTGAGGAACAGTGAAGATTGTCGTCAACTATTGTTCTGTGGAGTAACTTTTTTTCTAAGATCCCTTTATGAACAAAGATTATTAAAGGGAAATCATATACTTGTAGAGGCTCTTTCGGACCCTGATATGCCGCAGTCAAAAAGAAGAAAAAGTGATATAGAAGTTACAGGTATTTCAGCTCATCAGTTTCAAGTAGCTGCAAATTGTTGGGAGCTTCTACATAACAATGAAGTAATATCTCGAGAGTTTAATAAATTGGCTAATCAGCTTCAAGCTAAGCCATGGGCTGAAGGTTTTGCAGATGAATTAGCTCTGTACAGAGGTAGATATGATGAAGCTTTACCATCAACTACTTCTAACAATATGGTGTCATGTTTGATGAAAATCTCAGTTTATTTTAGTCAAAAGAAATATGCAGCCAGCATTGAAAGTATATTGGCGGCTTTGCCACAGTTACCAAATGTAGAGGGAATGTTAGAGGCTGAATTAATTATAGGTGGTAAACAGAGACATTTACATTTTTTACCTTTAACAAAATTAGCTATTATGCATTATATCTGCACATTGTTAATCAGAATATTGTTAAACACTGGAAGCAGTTCTGACCTCATCTATGGCCACATCATGGTTTTAATGCAACTAGGTTGGCCACAGGAAGAGTCTATTTTTATTCACATATTGGAATATATTAGACAGAAAGGAATATTTCACTATCATTTGTTTGCTTCATATATTATACACATTGACATACTTGAAGAGATTTGCTTTATGTGGAATGAACAGGGGAATAATATTGTGTTAGATATTTTACCTAATTCACAGCAACATGTAGGACAGAGAAGAATAGGTACCCGTGGTGCTGATAAAGGAGTGAAAGAGGATTTTAAACAAGCATTGAAAGCTCAGGTTACACGCAGCAATGAATCAACTTTAAATTTAATAATACAATTTATTACTTCAGAGCGTTCCTTTTTTCTTCAAGTAGTATAG

Protein

MPGVEAILSDEDFIIAKAKDAQKSDIFAAKAWMLTAKTLFPTNFKIQFEAYLMEKQSGNVQEAAECFSSLMLSRQNMTALLPEISAIANALRSAEGSFLCQMFDHICPDIQLTILKTSVENSDDTTEHCKLLVLLLKKFPQLGVDSLVKTLINAEKFFYDNRYARLLVVETLPLLSSLESPRLLQRLLIKAIDFYNSYVYDQTEHDISDPWQRLYGVLDLLGRQLCWDPYLVNYSNSLNKEAYFQKLLTLRNSEDCRQLLFCGVTFFLRSLYEQRLLKGNHILVEALSDPDMPQSKRRKSDIEVTGISAHQFQVAANCWELLHNNEVISREFNKLANQLQAKPWAEGFADELALYRGRYDEALPSTTSNNMVSCLMKISVYFSQKKYAASIESILAALPQLPNVEGMLEAELIIGGKQRHLHFLPLTKLAIMHYICTLLIRILLNTGSSSDLIYGHIMVLMQLGWPQEESIFIHILEYIRQKGIFHYHLFASYIIHIDILEEICFMWNEQGNNIVLDILPNSQQHVGQRRIGTRGADKGVKEDFKQALKAQVTRSNESTLNLIIQFITSERSFFLQVV

Description

Component of the Integrator complex, a complex involved in the transcription of small nuclear RNAs (snRNA) and their 3'-box-dependent processing (PubMed:21078872, PubMed:23097424). May be involved in the 3'-end processing of the spliceosomal snRNAs U1, U2, U4 and U5 but is probably not essential for 3'-end processing of the snRNA U7 (PubMed:21078872, PubMed:23097424).

Subunit

Belongs to the multiprotein complex Integrator, at least composed of IntS1, IntS2, IntS3, IntS4, omd/IntS5, IntS6, defl/IntS7, IntS8, IntS9, IntS10, IntS11, IntS12, asun/IntS13 and IntS14.

Similarity

Belongs to the Integrator subunit 10 family.

Keywords

Complete proteome   Nucleus   Reference proteome  

Feature

chain  Integrator complex subunit 10

Uniprot

A0A2A4K1N1   A0A2W1BLV3   A0A1E1WQ16   A0A0L7LKV8   S4PWG4   A0A212ELR1   + More
A0A194RC04   A0A194PRQ1   D6WD72   A0A1W4XA57   A0A1Y1KY77   A0A1W4X8P3   A0A2J7PX13   A0A067RHA3   A0A154P7E2   A0A2A3EK42   E2AEQ6   A0A088APX3   A0A026W720   E2B2L1   K7J8Y0   F4W6R0   A0A158P1T9   A0A151J9S5   A0A195EQK9   A0A232EU42   A0A195AWE5   A0A2P8ZJM5   A0A1Y1L1S0   A0A1B6J7H0   A0A1B6FDS8   A0A0L7R5A1   A0A0M8ZQF7   A0A1W4WZA3   E0VKD1   A0A0P5GEP2   A0A0P6GW34   A0A0P6GD46   A0A0P5EIQ6   A0A0P5C7L4   A0A1B0GH30   A0A182GC60   A0A1B6D935   A0A0N7ZLQ0   A0A1B6DN54   A0A151XAR0   A0A0P5G808   W5JKX8   A0A182FSI3   E9H4I3   A0A182Q023   Q0C787   A0A1S4EUQ9   A0A1I8NUS9   A0A2J7PX27   A0A336LXP2   A0A182RQ89   A0A336M934   A0A182YQE3   A0A0P5D8M3   A0A0P6B444   A0A0N8BYC8   A0A182JIB0   A0A0P5T6F7   A0A182VQP7   A0A182N576   A0A182WZ03   A0A182MHC8   A0A182TDL4   A0A182LCM4   Q7QKK6   A0A0P5YTE2   A0A182PNB1   A0A1L8DDG4   A0A182HJC9   A0A182V9R9   A0A0P5AKE8   A0A182KGR8   A0A1I8M5R8   A0A1B6M3W0   A0A2S2P9T9   A0A1Q3F1Y2   A0A2S2R838   T1J3C9   B0X523   A0A0M3QWC2   A0A1B0DJH8   J9K5N0   A0A2R5L6Z7   Q9VZM7   A0A1A9US17   B4LDG9   A0A1B0GG98   A0A0P5TQX6   A0A1B0AJC1   A0A1A9WG74   A0A0J9RPY1   B4HTU2  

Pubmed

28756777    26227816    23622113    22118469    26354079    18362917    + More
19820115    28004739    24845553    20798317    24508170    30249741    20075255    21719571    21347285    28648823    29403074    20566863    26483478    20920257    23761445    21292972    17510324    25244985    20966253    12364791    14747013    17210077    25315136    10731132    12537572    21078872    23097424    17994087    22936249   

EMBL

NWSH01000276    PCG77838.1    KZ150090    PZC73690.1    GDQN01001939    JAT89115.1    + More
JTDY01000700    KOB76168.1    GAIX01006833    JAA85727.1    AGBW02013994    OWR42425.1    KQ460398    KPJ15132.1    KQ459601    KPI93815.1    KQ971312    EEZ98305.2    GEZM01070666    JAV66349.1    NEVH01020862    PNF20873.1    KK852507    KDR22428.1    KQ434831    KZC07797.1    KZ288232    PBC31549.1    GL438884    EFN68086.1    KK107436    QOIP01000002    EZA50824.1    RLU26042.1    GL445159    EFN90067.1    GL887707    EGI70136.1    ADTU01006849    KQ979361    KYN21818.1    KQ982021    KYN30461.1    NNAY01002204    OXU21816.1    KQ976731    KYM76372.1    PYGN01000035    PSN56704.1    GEZM01070665    JAV66350.1    GECU01018233    GECU01012581    JAS89473.1    JAS95125.1    GECZ01021424    JAS48345.1    KQ414654    KOC66057.1    KQ435915    KOX68827.1    DS235241    EEB13837.1    GDIQ01249246    JAK02479.1    GDIQ01028357    JAN66380.1    GDIQ01035032    JAN59705.1    GDIP01147786    LRGB01002378    JAJ75616.1    KZS08021.1    GDIP01174426    JAJ48976.1    AJWK01003905    JXUM01053700    KQ561787    KXJ77538.1    GEDC01015193    JAS22105.1    GDIP01233137    JAI90264.1    GEDC01029157    GEDC01010200    JAS08141.1    JAS27098.1    KQ982335    KYQ57419.1    GDIQ01245286    JAK06439.1    ADMH02001230    ETN63570.1    GL732591    EFX73392.1    AXCN02000166    CH477186    EAT48939.1    PNF20874.1    UFQS01000194    UFQT01000194    SSX01089.1    SSX21469.1    UFQT01000732    SSX26786.1    GDIP01163835    JAJ59567.1    GDIP01020412    JAM83303.1    GDIQ01132835    JAL18891.1    GDIP01134736    JAL68978.1    AXCM01016945    AAAB01008794    EAA03577.4    GDIP01053397    JAM50318.1    GFDF01009730    JAV04354.1    APCN01002147    GDIP01198086    JAJ25316.1    GEBQ01009356    JAT30621.1    GGMR01013561    MBY26180.1    GFDL01013537    JAV21508.1    GGMS01016935    MBY86138.1    JH431823    DS232362    EDS40669.1    CP012525    ALC43899.1    AJVK01065228    ABLF02035564    ABLF02035565    ABLF02035571    GGLE01001168    MBY05294.1    AE014296    BT015983    AAV36868.1    CH940647    EDW68907.1    CCAG010002248    GDIP01140790    JAL62924.1    CM002912    KMY97418.1    KMY97419.1    CH480817    EDW50363.1   

Proteomes

UP000218220    UP000037510    UP000007151    UP000053240    UP000053268    UP000007266    + More
UP000192223    UP000235965    UP000027135    UP000076502    UP000242457    UP000000311    UP000005203    UP000053097    UP000279307    UP000008237    UP000002358    UP000007755    UP000005205    UP000078492    UP000078541    UP000215335    UP000078540    UP000245037    UP000053825    UP000053105    UP000009046    UP000076858    UP000092461    UP000069940    UP000249989    UP000075809    UP000000673    UP000069272    UP000000305    UP000075886    UP000008820    UP000095300    UP000075900    UP000076408    UP000075880    UP000075920    UP000075884    UP000076407    UP000075883    UP000075902    UP000075882    UP000007062    UP000075885    UP000075840    UP000075903    UP000075881    UP000095301    UP000002320    UP000092553    UP000092462    UP000007819    UP000000803    UP000078200    UP000008792    UP000092444    UP000092445    UP000091820    UP000001292   

PRIDE

Q9VZM7   

Interpro

IPR026164   Int_cplx_su10        + More
IPR016024   ARM-type_fold       

SUPFAM

SSF48371   SSF48371       

ProteinModelPortal

A0A2A4K1N1   A0A2W1BLV3   A0A1E1WQ16   A0A0L7LKV8   S4PWG4   A0A212ELR1   + More
A0A194RC04   A0A194PRQ1   D6WD72   A0A1W4XA57   A0A1Y1KY77   A0A1W4X8P3   A0A2J7PX13   A0A067RHA3   A0A154P7E2   A0A2A3EK42   E2AEQ6   A0A088APX3   A0A026W720   E2B2L1   K7J8Y0   F4W6R0   A0A158P1T9   A0A151J9S5   A0A195EQK9   A0A232EU42   A0A195AWE5   A0A2P8ZJM5   A0A1Y1L1S0   A0A1B6J7H0   A0A1B6FDS8   A0A0L7R5A1   A0A0M8ZQF7   A0A1W4WZA3   E0VKD1   A0A0P5GEP2   A0A0P6GW34   A0A0P6GD46   A0A0P5EIQ6   A0A0P5C7L4   A0A1B0GH30   A0A182GC60   A0A1B6D935   A0A0N7ZLQ0   A0A1B6DN54   A0A151XAR0   A0A0P5G808   W5JKX8   A0A182FSI3   E9H4I3   A0A182Q023   Q0C787   A0A1S4EUQ9   A0A1I8NUS9   A0A2J7PX27   A0A336LXP2   A0A182RQ89   A0A336M934   A0A182YQE3   A0A0P5D8M3   A0A0P6B444   A0A0N8BYC8   A0A182JIB0   A0A0P5T6F7   A0A182VQP7   A0A182N576   A0A182WZ03   A0A182MHC8   A0A182TDL4   A0A182LCM4   Q7QKK6   A0A0P5YTE2   A0A182PNB1   A0A1L8DDG4   A0A182HJC9   A0A182V9R9   A0A0P5AKE8   A0A182KGR8   A0A1I8M5R8   A0A1B6M3W0   A0A2S2P9T9   A0A1Q3F1Y2   A0A2S2R838   T1J3C9   B0X523   A0A0M3QWC2   A0A1B0DJH8   J9K5N0   A0A2R5L6Z7   Q9VZM7   A0A1A9US17   B4LDG9   A0A1B0GG98   A0A0P5TQX6   A0A1B0AJC1   A0A1A9WG74   A0A0J9RPY1   B4HTU2  

KEGG

101746643    K13147 integrator complex subunit 10 | (RefSeq) integrator complex subunit 10

GO

GO:0032039   GO:0016180  

PANTHER

PTHR16055  

Subcellular location

Nucleus  

Length:

578

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.42512

Exp number, first 60 AAs:

0.00489

Total prob of N-in:

0.00092

outside

1  -  578

 

 

Pi

323.658899

Theta

229.150229

Tajima's D

1.302025

CLR

0

CSRT

0.734613269336533

Interpretation

Uncertain