SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01976
Annotation
PREDICTED:_transmembrane_protein_164_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 1.349
 

Sequence

CDS
ATGTTCGAATGGGCGTATAGTGGTGCAAATAAAGCTGTCCCAAGAAATGTGAAGACTTATCCAATATTAAAAATACCCATTGATACGGATTACACCAAAAGTGACAGAGGCGGCAAACGATTGCTTTTAATCCTTTTAGCACTATTATGGGGAATGGAAATAGGGTTTAAATTTGCTTCACACACTGTGATATATTTGTTGAATCCATGTCATGTAACAACATTAATACAAATTTATTTACTAGCTGCTCCACCAAGTAAAATTGTTACAGCATTGTTTAGAATTCATTTATATTTGTTAAATGGACCTCTTCTTGCATTTTTATTTCCAGAAACAGCTTCCAGGAAGATTTTTGTGGAAGCTGCCTTGTACTGGATACAACATGGTATGATGTGTATTATACCTTATTATTTATTGAGACTTGGAGGCGTATATAATATTGAACCCATAAGAGATTTTAATTGGTCTGTATTTAGCTATTGTCTAAATTTGCTCTATCATTTCATCATATTACAAATTATAGCCATTCCAGCCCAAGTGAACTTGAATCATATGCTTTGTCCAGCCATCCTGGATCCATTTGACGGACCGTGGTACCGTGTTGTAGCTGTGCTTCATCAAGCATTACTATGTCCAATACTTGGCAAAGCATATTGCCTTATTGCAGAATTCTGTTTAACAAAATTTCCACCTACCAAAGTTAAACCCCAAATGAAAGACTGCTTGCAAGAAAACAAATTTCCGCACCAGCTTGCCACACATTCTCATAATGATTAA
Protein
MFEWAYSGANKAVPRNVKTYPILKIPIDTDYTKSDRGGKRLLLILLALLWGMEIGFKFASHTVIYLLNPCHVTTLIQIYLLAAPPSKIVTALFRIHLYLLNGPLLAFLFPETASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVYNIEPIRDFNWSVFSYCLNLLYHFIILQIIAIPAQVNLNHMLCPAILDPFDGPWYRVVAVLHQALLCPILGKAYCLIAEFCLTKFPPTKVKPQMKDCLQENKFPHQLATHSHND

Summary

EMBL
NWSH01000276    PCG77835.1    KZ150090    PZC73687.1    ODYU01010379    SOQ55453.1    + More
AGBW02013994    OWR42427.1    PCG77834.1    GAIX01003976    JAA88584.1    KQ459601    KPI93817.1    KQ460398    KPJ15134.1    JTDY01004730    KOB67822.1    GDQN01007980    GDQN01006858    JAT83074.1    JAT84196.1    KQ436126    KOX67439.1    GEZM01057527    JAV72276.1    KQ414663    KOC65216.1    GL450531    EFN80842.1    KQ971342    KYB27706.1    GL888613    EGI59023.1    KK107575    QOIP01000011    EZA48700.1    RLU17041.1    KQ980886    KYN11809.1    KQ977649    KYN00777.1    KQ976439    KYM86671.1    ADTU01024193    GL437573    EFN70294.1    LBMM01012420    KMQ86233.1    KQ982409    KYQ56783.1    GL765107    EFZ16898.1    KZ288351    PBC27342.1    AJWK01015551    UFQT01000827    SSX27433.1    NNAY01003547    OXU19223.1    KK852829    KDR15349.1    GL732623    EFX70251.1    GDHC01013859    JAQ04770.1    GDIQ01222363    JAK29362.1    GDIP01059363    JAM44352.1    GDIQ01136688    GDIP01096616    GDIQ01031420    LRGB01000082    JAL15038.1    JAM07099.1    KZS21129.1    GDIQ01218418    JAK33307.1    GDIP01056521    JAM47194.1    GDIP01204345    JAJ19057.1    GDIP01086708    JAM17007.1    JXUM01134568    KQ568142    KXJ69123.1    CH477532    EAT39439.1    GDIP01216400    JAJ07002.1    DS235093    EEB11868.1    GFDL01001950    JAV33095.1    GFDL01001951    JAV33094.1    GANO01000177    JAB59694.1    GECU01035447    JAS72259.1    GEBQ01016984    JAT22993.1    ADMH02000343    ETN66894.1    AXCN02002425    APGK01017424    KB740026    ENN81895.1    KB632163    ERL89271.1    GEDV01006699    JAP81858.1    AXCM01004403    GACK01008419    JAA56615.1    APCN01007196    APCN01007197    GFPF01012796    MAA23942.1    LJIJ01000387    ODM98045.1    GEFH01004728    JAP63853.1    GFAA01003235    JAU00200.1    KQ981931    KYN32803.1    GDIP01117097    JAL86617.1    GDIP01030259    JAM73456.1    GDIQ01026118    JAN68619.1    JXJN01012712    JXJN01012713    GANP01010835    JAB73633.1    GEFM01006454    GEGO01005560    JAP69342.1    JAR89844.1    MWRG01001232    PRD34488.1    HADW01009605    HADX01002627    SBP11005.1    KK119940    KFM77106.1    JH431603    GFAC01001369    JAT97819.1    GGLE01004196    MBY08322.1    KB203598    ESO83788.1    CP026246    AWP00350.1    HAEG01011558    SBR90071.1    HAED01001618    HAEE01002569    SBR22589.1    HADZ01015508    HAEA01004007    SBP79449.1    HADY01011754    HAEJ01001510    SBP50239.1   
Pfam
PF14808   TMEM164        + More
PF01391   Collagen
PF01413   C4
PF00379   Chitin_bind_4
Interpro
IPR026508   TMEM164        + More
IPR036954   Collagen_IV_NC_sf       
IPR001442   Collagen_IV_NC       
IPR016187   CTDL_fold       
IPR008160   Collagen       
IPR002052   DNA_methylase_N6_adenine_CS       
IPR000618   Insect_cuticle       
IPR031311   CHIT_BIND_RR_consensus       
SUPFAM
SSF56436   SSF56436       
Gene 3D

Ontologies

Topology

Length:
258
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
110.34215
Exp number, first 60 AAs:
16.55336
Total prob of N-in:
0.71877
POSSIBLE N-term signal
sequence
inside
1  -  40
TMhelix
41  -  63
outside
64  -  87
TMhelix
88  -  110
inside
111  -  116
TMhelix
117  -  139
outside
140  -  153
TMhelix
154  -  176
inside
177  -  258
 
 

Population Genetic Test Statistics

Pi
54.765628
Theta
149.247099
Tajima's D
-1.210269
CLR
427.362559
CSRT
0.101544922753862
Interpretation
Uncertain
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