Gene

KWMTBOMO01974

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr4(+):8950622-8951786      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.708

CDS

ATGGAAGAAGTTTTAAACACGCTAATTTCAATAAAAAAAGAACTGGAAGAACAAAGAATTGAAATTAGAGAAACTGGAAAAAATGTTACGGAAAAAGTTACACAAAATATTACTAGTATATTCGAGGAGAAATTTTTGGTCTGGGAAGGAAAACTTGGAGAAATGAAAGAAAAAGTGGAAAATCAAGAAAAAAGAATTCATTACCTGGAAAAACAAACAAGAGTAAGAAACTTAGTATTTTTCGGTATCGAGGAAAACGAAACATCATACAAGAGTTTCGAAGAAAATATAATTAAATGGATTGAGCAATATTTCTCTATCAAACTAACCTACAGCGACATTCAAGAGATAAAAAGACTGGGAAAGAAACAAGAGAGACCACGTCCAACTGTTGTAACTTTCACTACACTAGGAATAAAAATCGAAATATTTAAACAAAAAAGAGCGCTGAAAGATACACAGTACTATATGAAAGAAGACTTCCCCAAATATGTACTTGAAAAAAGAAAGGCACTACAGGAACAACTGAAATTAGAGAGAGAAAAGGGAAATACAGCTATACTCAAATATGATAAACTAATTGTATCAAAATACCAAAGTAAAAGAAAATACCGGTTATCTCCAGACAATACCCCACAAATCAATATAGACAAGTATACTCAGGCTAGTAAAAAAAACAAGACAAAGCAGATTGGCAAGACAGTCACTAGGTCAAATAGTATCACAGAAGGAGTCATAAAACCTAGCATGCTCAACTTCTTAGTTAACAAAAATACAATCAAAACTAACAACAACCAAGAAAGTAACAGCGAGAATATATAG

Protein

MEEVLNTLISIKKELEEQRIEIRETGKNVTEKVTQNITSIFEEKFLVWEGKLGEMKEKVENQEKRIHYLEKQTRVRNLVFFGIEENETSYKSFEENIIKWIEQYFSIKLTYSDIQEIKRLGKKQERPRPTVVTFTTLGIKIEIFKQKRALKDTQYYMKEDFPKYVLEKRKALQEQLKLEREKGNTAILKYDKLIVSKYQSKRKYRLSPDNTPQINIDKYTQASKKNKTKQIGKTVTRSNSITEGVIKPSMLNFLVNKNTIKTNNNQESNSENI

Uniprot

A0A2A4KAH5   A0A0L7KL25   A0A0L7KMI6   A0A194RRA2   D7F178   A0A2H1WF27   + More
A0A0L7L607   A0A0L7LJT1   A0A0L7KFW9   A0A0L7LLD6   A0A2H1WS99   A0A0L7K2J4   A0A2A4JB54   A0A0L7LIY0   A0A0L7LL17   D7F177   A0A0L7LIU1   A0A0L7LU16   A0A0L7LUV7   A0A0L7L5X6   A0A0L7KKY9   A0A0L7KQ23   A0A2A4J1F3   A0A2A4JED5   A0A0L7LDK8   A0A069DR53   A0A2W1BGL1   A0A2A4J3C0   A0A2A4IX08   A0A2A4K1M2   A0A0L7L3X8   A0A0L7KX87   A0A0L7LNS8   A0A2H1V457   A0A2H1V475   D7F179   A0A0L7L7G4   A0A2A4J942   A0A2A4JJB3   A0A2A4J436   H9J4J3   A0A1Y1KNT7   A0A1S3DLA6   A0A0L7KQ18   A0A1S4EPY6   H9JKN5  

Pubmed

26227816    26354079    20470440    26334808    28756777    19121390    + More
28004739   

EMBL

NWSH01000023    PCG80652.1    JTDY01009375    KOB63594.1    JTDY01008567    KOB64512.1    + More
KQ459995    KPJ18566.1    FJ265563    ADI61831.1    ODYU01008249    SOQ51673.1    JTDY01002701    KOB70892.1    JTDY01000843    KOB75692.1    JTDY01009971    KOB62006.1    JTDY01000640    KOB76373.1    ODYU01010663    SOQ55918.1    JTDY01016948    KOB51874.1    NWSH01002039    PCG69337.1    JTDY01000895    KOB75518.1    JTDY01000780    JTDY01000104    JTDY01000008    KOB75906.1    KOB78842.1    KOB79479.1    FJ265562    ADI61830.1    JTDY01001015    KOB75121.1    JTDY01000100    KOB78869.1    JTDY01000076    KOB79001.1    JTDY01002685    KOB70933.1    JTDY01009161    KOB64038.1    JTDY01007191    KOB65392.1    NWSH01004020    PCG65566.1    NWSH01001771    PCG70189.1    JTDY01001575    KOB73484.1    GBGD01002698    JAC86191.1    KZ150150    PZC72845.1    NWSH01003397    PCG66369.1    NWSH01005231    PCG64345.1    NWSH01000260    PCG77926.1    JTDY01003098    KOB70157.1    JTDY01004672    KOB67888.1    JTDY01000437    KOB77173.1    ODYU01000585    SOQ35630.1    ODYU01000586    SOQ35631.1    FJ265564    ADI61832.1    JTDY01002536    KOB71226.1    NWSH01002532    PCG68054.1    NWSH01001196    PCG72157.1    NWSH01003169    PCG66835.1    BABH01021795    GEZM01082533    JAV61335.1    JTDY01007450    KOB65190.1    BABH01024878   

Proteomes

UP000218220    UP000037510    UP000053240    UP000005204    UP000079169   

PRIDE

D7F178    D7F177    D7F179    H9J4J3    H9JKN5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR004244   Transposase_22        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4KAH5   A0A0L7KL25   A0A0L7KMI6   A0A194RRA2   D7F178   A0A2H1WF27   + More
A0A0L7L607   A0A0L7LJT1   A0A0L7KFW9   A0A0L7LLD6   A0A2H1WS99   A0A0L7K2J4   A0A2A4JB54   A0A0L7LIY0   A0A0L7LL17   D7F177   A0A0L7LIU1   A0A0L7LU16   A0A0L7LUV7   A0A0L7L5X6   A0A0L7KKY9   A0A0L7KQ23   A0A2A4J1F3   A0A2A4JED5   A0A0L7LDK8   A0A069DR53   A0A2W1BGL1   A0A2A4J3C0   A0A2A4IX08   A0A2A4K1M2   A0A0L7L3X8   A0A0L7KX87   A0A0L7LNS8   A0A2H1V457   A0A2H1V475   D7F179   A0A0L7L7G4   A0A2A4J942   A0A2A4JJB3   A0A2A4J436   H9J4J3   A0A1Y1KNT7   A0A1S3DLA6   A0A0L7KQ18   A0A1S4EPY6   H9JKN5  

KEGG

101743231    no KO assigned | (RefSeq) uncharacterized LOC101743231

GO

GO:0004519   GO:0003964  

PANTHER

PTHR11505   PTHR23227  

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00393

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01418

outside

1  -  273

 

 

Pi

249.574007

Theta

178.125664

Tajima's D

1.261956

CLR

134.433335

CSRT

0.726213689315534

Interpretation

Uncertain