Gene

KWMTBOMO01970

Annotation

putative_WD_repeat_domain_35_[Danaus_plexippus]

Location

Bomo_Chr4(+):8906662-8915989      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.237 Mitochondrial   Reliability : 1.054 Nuclear   Reliability : 1.385

CDS

ATGTTTCAGTTGGCTAATGTCGAAGCTTCAAAAAATGCATCACCTCTGCGAATAAAGAAGCTATACATACTGGCGGGTCACTTGTACAATCAAAACCCAGGAGCGGCAGGGTGCACGGGAGCGGAGTGGTGGCGGCGTGGGGCGGCGCAGCACTGGCTGGCGACAGCCGCCTCCCCGATGCGCCCCGACGCCGCCCTGCGCGCCGCCGCCCGCCTGCACGCGCTACTACCGGCGCTGCACCCCGCACAACATCGCGCTGCCTGGTGCACAATAGCCTCAATAGCTATTCAAAATCGAGCATTCGACCTGGCTTCTAAGGCGTTCATTAAACTCGAAGCGATGGACCCTGCTGTGTTCGAGAATCTGGCAGTGGAAATATTTACGAGGTGCAGACCTAAAGATGCAAAAGGAAACAGAATCGAGTGTCCGAATTGTGAAGGTTCAATGCCGGAGTGGGTATCGTCGTGTCCGCGGTGTTCGTGGCAGCTGGAGACGTGCGCAGTGTCAGGTCGGAGTCTGCACGGCTCGCACACGCTGTGGTGTTGCCGCGTGTGTGACGCGCGCGCTCCCAGACACGAGCTCGTCCTGAGGCACTCTTGTCCCTTGTGTCACGCAGAGCTCGCCTGA

Protein

MFQLANVEASKNASPLRIKKLYILAGHLYNQNPGAAGCTGAEWWRRGAAQHWLATAASPMRPDAALRAAARLHALLPALHPAQHRAAWCTIASIAIQNRAFDLASKAFIKLEAMDPAVFENLAVEIFTRCRPKDAKGNRIECPNCEGSMPEWVSSCPRCSWQLETCAVSGRSLHGSHTLWCCRVCDARAPRHELVLRHSCPLCHAELA

Uniprot

A0A194RCZ2   A0A194PKG8   A0A2J7QIZ3   A0A0B6YWB1   A0A2C9JUQ3   A0A067RAM4   + More
A0A0K2VJ26   A0A210QYN3   R7U1T8   A0A151IRC6   A0A151WLE8   A0A0P4W8W7   A0A026WRL9   A0A195EVX3   F4WPI6   A0A310SNV8   A0A3L8DL49   A0A164UF35   E9G0W4   A0A0L8I934   A0A0P5RH67   A0A0P5ZFH9   A0A158NNX5   A0A0P5GMQ9   A0A0P5XD48   A0A0P6JWF7   A0A0P5VV67   A0A195BTI7   A0A0P6GH01   A0A0P5VPM3   A0A154PPB8   V3ZQR5   A0A0A9VZ72   A0A151IBA7   A0A0C9RY34   E2ACZ8   E9G0V1   A0A0J7KMZ5   A0A0M9ACJ7   A0A2A3E8W1   A0A0K2VJ16   A0A087ZUZ7   A0A224X5S9   A0A146KNE6   E2BQ47   A0A146LWV9   E9J052   A0A1J1IJ25   A0A369RSC8   A0A023F108   A0A0L7QS66   B3S216   A0A3M7SK55   B7P3S6   A0A293LS05   A0A0P6C580   K1R2H9   A0A2R7WMH9   W4Y4J7   F1L3D6   A0A1B6EDL0   A0A1S4EZ44   A0A0R3RYI0   A0A182GYX9   Q17KZ5   A0A3P6TAY2   A0A182EAM5   A0A044S6S5   W5JQV6   A0A158PPH5   A0A2G8L2B0   A0A1I7VWC7   A0A336MHP0   T1HFV8   A0A1S0UF24   B0X039   A0A0N4TUD9   A0A1Y1Z6U9   A0A182FU73   E0VC29   A0A2A6B3R1   A0A1Y1XQ76   A0A183URJ2   A0A182WET1   A0A2P8YVI0   A0A182RY14   A0A182QJS6   A0A182MXS4   A0A182P030   A0A182M7M1   A0A182JXU8  

Pubmed

26354079    15562597    24845553    28812685    23254933    24508170    + More
21719571    30249741    21292972    21347285    25401762    20798317    26823975    21282665    30042472    25474469    18719581    30375419    22992520    21685128    26483478    17510324    22919073    20920257    23761445    29023486    25217238    20566863    18806794    29403074   

EMBL

KQ460398    KPJ15140.1    KQ459601    KPI93822.1    NEVH01013563    PNF28555.1    + More
HACG01013754    CEK60619.1    KK852580    KDR20897.1    HACA01033088    CDW50449.1    NEDP02001201    OWF53860.1    AMQN01010783    KB308507    ELT97636.1    KQ981129    KYN09278.1    KQ982971    KYQ48611.1    GDRN01077169    GDRN01077168    JAI62781.1    KK107128    EZA58336.1    KQ981953    KYN32415.1    GL888245    EGI63899.1    KQ762207    OAD56027.1    QOIP01000006    RLU21101.1    LRGB01001581    KZS11303.1    GL732528    EFX87334.1    KQ416233    KOF97996.1    GDIQ01101577    JAL50149.1    GDIP01046136    JAM57579.1    ADTU01021881    GDIQ01238190    JAK13535.1    GDIP01073841    JAM29874.1    GDIQ01005918    JAN88819.1    GDIP01094781    JAM08934.1    KQ976417    KYM89746.1    GDIQ01035000    JAN59737.1    GDIP01097178    JAM06537.1    KQ435007    KZC13713.1    KB203771    ESO83236.1    GBHO01042134    GBHO01042132    JAG01470.1    JAG01472.1    KQ978111    KYM96943.1    GBYB01014180    JAG83947.1    GL438630    EFN68696.1    EFX86972.1    LBMM01005242    KMQ91682.1    KQ435701    KOX80369.1    KZ288345    PBC27629.1    HACA01033087    CDW50448.1    GFTR01008589    JAW07837.1    GDHC01021394    JAP97234.1    GL449694    EFN82235.1    GDHC01007779    JAQ10850.1    GL767291    EFZ13799.1    CVRI01000054    CRL00247.1    NOWV01000231    RDD37586.1    GBBI01003515    JAC15197.1    KQ414766    KOC61379.1    DS985247    EDV23603.1    REGN01001209    RNA36254.1    ABJB010116925    ABJB010143733    ABJB010276170    ABJB010414733    ABJB010500651    ABJB010587948    ABJB010656662    DS630446    EEC01248.1    GFWV01004775    MAA29505.1    GDIP01020809    JAM82906.1    JH816455    EKC35340.1    KK855098    PTY20827.1    AAGJ04017854    AAGJ04017855    JI170575    ADY44640.1    GEDC01001272    JAS36026.1    JXUM01021607    KQ560606    KXJ81646.1    CH477220    EAT47360.1    UYRX01000683    VDK85302.1    UYRW01001286    VDK76030.1    CMVM020000057    ADMH02000695    ETN65290.1    UYRR01031595    VDK51291.1    MRZV01000250    PIK54394.1    UFQS01000997    UFQT01000997    SSX08340.1    SSX28363.1    ACPB03001439    JH712391    EJD74175.1    DS232228    EDS37914.1    UZAD01013287    VDN93551.1    MCOG01000447    ORY05727.1    DS235045    EEB10935.1    ABKE03000127    PDM60512.1    MCFG01000004    ORX87909.1    UYWY01020745    VDM42438.1    PYGN01000337    PSN48259.1    AXCN02002309    AXCM01000525   

Proteomes

UP000053240    UP000053268    UP000235965    UP000076420    UP000027135    UP000242188    + More
UP000014760    UP000078492    UP000075809    UP000053097    UP000078541    UP000007755    UP000279307    UP000076858    UP000000305    UP000053454    UP000005205    UP000078540    UP000076502    UP000030746    UP000078542    UP000000311    UP000036403    UP000053105    UP000242457    UP000005203    UP000008237    UP000183832    UP000253843    UP000053825    UP000009022    UP000276133    UP000001555    UP000005408    UP000007110    UP000050640    UP000069940    UP000249989    UP000008820    UP000277928    UP000077448    UP000271087    UP000024404    UP000000673    UP000036680    UP000230750    UP000095285    UP000015103    UP000002320    UP000038020    UP000278627    UP000193920    UP000069272    UP000009046    UP000232936    UP000193944    UP000050794    UP000267007    UP000075920    UP000245037    UP000075900    UP000075886    UP000075884    UP000075885    UP000075883    UP000075881   

Pfam

PF00637   Clathrin        + More
PF12894   ANAPC4_WD40
PF18797   APC_rep
PF00514   Arm
PF05923   APC_r
PF05972   APC_15aa
PF00400   WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR017233   WDR35       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR000547   Clathrin_H-chain/VPS_repeat       
IPR024977   Apc4_WD40_dom       
IPR016024   ARM-type_fold       
IPR009240   APC_15aa_rpt       
IPR000225   Armadillo       
IPR041257   APC_rep       
IPR011989   ARM-like       
IPR026831   APC_dom       
IPR026818   Apc_fam       
IPR009223   APC_rpt       
IPR011044   Quino_amine_DH_bsu       
IPR019775   WD40_repeat_CS       
IPR019734   TPR_repeat       

SUPFAM

SSF50978   SSF50978        + More
SSF48452   SSF48452       
SSF48371   SSF48371       
SSF82931   SSF82931       
SSF50969   SSF50969       

Gene 3D

2.130.10.10     1.25.40.10     1.25.10.10    

ProteinModelPortal

A0A194RCZ2   A0A194PKG8   A0A2J7QIZ3   A0A0B6YWB1   A0A2C9JUQ3   A0A067RAM4   + More
A0A0K2VJ26   A0A210QYN3   R7U1T8   A0A151IRC6   A0A151WLE8   A0A0P4W8W7   A0A026WRL9   A0A195EVX3   F4WPI6   A0A310SNV8   A0A3L8DL49   A0A164UF35   E9G0W4   A0A0L8I934   A0A0P5RH67   A0A0P5ZFH9   A0A158NNX5   A0A0P5GMQ9   A0A0P5XD48   A0A0P6JWF7   A0A0P5VV67   A0A195BTI7   A0A0P6GH01   A0A0P5VPM3   A0A154PPB8   V3ZQR5   A0A0A9VZ72   A0A151IBA7   A0A0C9RY34   E2ACZ8   E9G0V1   A0A0J7KMZ5   A0A0M9ACJ7   A0A2A3E8W1   A0A0K2VJ16   A0A087ZUZ7   A0A224X5S9   A0A146KNE6   E2BQ47   A0A146LWV9   E9J052   A0A1J1IJ25   A0A369RSC8   A0A023F108   A0A0L7QS66   B3S216   A0A3M7SK55   B7P3S6   A0A293LS05   A0A0P6C580   K1R2H9   A0A2R7WMH9   W4Y4J7   F1L3D6   A0A1B6EDL0   A0A1S4EZ44   A0A0R3RYI0   A0A182GYX9   Q17KZ5   A0A3P6TAY2   A0A182EAM5   A0A044S6S5   W5JQV6   A0A158PPH5   A0A2G8L2B0   A0A1I7VWC7   A0A336MHP0   T1HFV8   A0A1S0UF24   B0X039   A0A0N4TUD9   A0A1Y1Z6U9   A0A182FU73   E0VC29   A0A2A6B3R1   A0A1Y1XQ76   A0A183URJ2   A0A182WET1   A0A2P8YVI0   A0A182RY14   A0A182QJS6   A0A182MXS4   A0A182P030   A0A182M7M1   A0A182JXU8  

KEGG

101736482    no KO assigned | (RefSeq) WD repeat-containing protein 35-like

GO

GO:0016021   GO:0006886   GO:0016192   GO:0005623   GO:0016055   GO:0008013   GO:0005929   GO:0061512   GO:0005930   GO:0030991   GO:0060271   GO:0035721   GO:1905515   GO:0042073   GO:0006935   GO:0036064  

PANTHER

PTHR16517:SF1   PTHR12607  

Length:

208

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02485

Exp number, first 60 AAs:

0.02277

Total prob of N-in:

0.04127

outside

1  -  208

 

 

Pi

288.516131

Theta

20.548962

Tajima's D

1.708334

CLR

0.458334

CSRT

0.833608319584021

Interpretation

Uncertain