SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01968
Pre Gene Modal
BGIBMGA005914
Annotation
PREDICTED:_sodium_leak_channel_non-selective_protein_isoform_X1_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 4.331
 

Sequence

CDS
ATGTTGGGAAGGAAGCAGAGCTTGAAAGGAGAGCCTGTGCTGGCTGATTACGGACCAGAGGAATCGCTAAATGAAAGTGCTGATATCGAATGGGTTAATAAGCTATGGGTTAGAAGAATTTTGAGACTATGTGCCCTTTTGAGTTTGATGTCTGTATCTTTAAACACACCAAAATCATTTGAGAAGTATCCTTATCTTCAAACTATAACTTTTGTAGTTGATTGCTGCGTAACTCTACTTTTTACTGCTGAAATGATTGCTAAAATGCACATAAGAGGAATTCTTAAGGGGGATGTCGCATACCTAAAAGATCATTGGTGCCAATTTGATGCTTCTATGGTATTTTTTCTTTGGGTATCTGTATTGCTACAAATGTTTGAGTTAACAGGAATTGTACCTAGATACAGCTATTTAAGCATACTAAGAGCACCTAGGCCATTAATTATGATACGGTTTTTAAGAGTATTTTTGAAGTTTTCAATGCCAAAATCTAGAATAAACCAGATATTCAAGAGATCAAGTCAACAAATCTACAATGTTACACTATTCTTCTTGTTTTTTATGTCACTGTATAGTTTGCTTGGTGTTCAATTTTTTGGAGAGCTCACACATCATTGTGTTAGGAACAACACCCACCCAAGTGACATAACGATAAACTCATTAGCAATCCCAGACACGTTTTGCTCCCCTGACCCTGACTCTGGATATCAGTGCCCTTCTGGTATGAAATGTATGAAACTAAATTTATCAAAGTATATTATGGGCTTCAATGGATTCGAGGAATTTACAACAAGTTTATTTACGGTATACCAGGCGTCTTCACAAGAAGGATGGGTGTTTATAATGTATCGAGCTATAGATTCGTTGCCAACTTGGAGATCTGCCTTATACTTTAGCACGATGATATTTTTCTTGGCCTGGCTGGTAAAAAACGTGTTCATAGCTGTCATCACGGAGACCTTCAATGAGATTAGAGTTCAGTTCCAGCAGATGTGGGGCGTTCGGAATCCAATAACTAAAGGTAGCACGACTCAGTTCTTTACTGGCGACGACAACGGCTGGAAATTGGTCACTATTGATGAAAATAAACATTCAGGTACTGCACCAGATATATTTCATCGATTGTTGCGATCCGCTTACTTTCGGCTTTTGGTGATGAGCGCGGTGTTAGCAAATGGAATTATAACAGCCTCTATGCAGTTTCATCACGACGGAAACCCCAGAGAATATTTCTACCAGAAGTATTACTATATAGAAATTGCATTTACGATTTTCTTGGATTTGGAAGCTTTACTCAAGATCTGGTGTTTGGGTTTGAAAGGATATTTCAAGCATTCTGTCCACAAGTTTGAATTGCTCTTGGCTATTGGGACCACGTTGCACATTATACCCCAGCTGTACATGTCGGCTTTCACTTATTTTCAGGTTCTTCGAGTGGTACGACTAATAAAAGCATCGCCGATATTGGAAGGATTCGTGTACAAGATCTTTGGACCCGGGAAAAAACTAGGAAGCCTTATTATATTCACCATGTGCTTGCTCATCATAAGCTCATCGATTTCGATGCAGTTGTTTTGCTTTCTGTGTGAATTTACCAAATTTGAAACATTTGATGAGGCATTTATGTCAATGTTCCAAATACTCACACAAGAAGCTTGGGTTGAAGTAATGGACGAGACCATGGTTCGAACCAGTCAAACTCTTACCCCATTAGTGGCCATTTACTTCATATTATACCATCTATTCGTCACTCTGATTGTACTTTCGCTCTTCGTTGCCGTCATTTTAGACAATCTCGAGCTGGACGAGGACATAAAGAAGTTAAAACAATTAAAGTACCGACAGCAGAGCGCCGAAATCAAAGAGAGCCTGCCGTTTAGATTGAGAATATTCGAAAAGTTCCCCGACAGTCCGCAGATGACGAAGCTACACAAAGTCCCTGGGGATTTTAATTTACCAAAGGTGCGAGAGTCGTTCATGCGGCAGTTCGTGTGCGAGGTGGAGGGCGAGGAGGAGGCGGGGGGCGCGGGGCCGGGGGGCGCGGACCTGTCCCGCCGCACCTTCGAGTACATCAGCGTCGCCAAGATCGCCTTCCCGTACCGCAAGCGCTGCCTCGTCAAGACGCTGGTGGTGGCGCCGCCCTCGCAGCGACCCAGCTCGGCGCTGCGGAGACACGTCGTCACCTCCATTATAGAGGACTCCAATAATCACCGACCGCTACTGGGAGACTCTGCAATGTTAGCGACCGGAGGGAAGTCAGGTCTGAAACCTCAAGGCACTATATCCAGTGCGAAACAACTTCGCGTCGATCAAAAAAAGTTCGGCTCGCGTTCGATAAGACGGTCGGTCCGAAGCGGATCCATCAAGTTGAAGCAGACCTATGAGCATTTGTTAGAGAACGGCGACATCGGCGCCGCGTCGCGCGTCGTGCCCTCGTCGCGAGCGCGCCCGCCATACCTCGACATCCGCTTGCTGCAAGCCAAGAGGCAACAGGCCGAAATGCGACGAAATCAACGTGAAGAAGACCTCCGCGAAAATCACCCGTTGTTTGATACGCCGCTGCTAATAGTGCCTAGAGAGTCACGATTTCGAAAGATTTGTCGAGCCATTGTCGACGCACGGTATGACGCGAGACTTCGAGATCCAATTACTGGCAATGAAAGGAAAGTGCACTACAAAAGTTTTCATAATTTCCTCGGCTTAGTAACTTACATGGATTGGGTAATGATCATGGTGACGACGTTGTCGTGTTTATCTATGATGTTCGAAACACCCACGTACAGAGTCATGGAAAACTTCGTTTTACAAATTGCAGAATACGGCTTCGTGATTTTCATGAGCCTCGAATTGGCTTTGAAGATTTTGGCCGATGGATTGTTTTTCACACCCAAGGCTTACCTCAAAGATGCCGCTGCCGTGTTAGATGTCTTTATATACATTGTGTCGCTGACATTCCTGTGCTGGATGCCGCGGCGCGTGCCGCCCGGCTCGCCCGCGCAGATGCTGATGATCCTCCGCTGCGTGCGCCCGCTCCGGATCTTCACCCTCGTGCCGCACATGCGCAAGGTCGTCTACGAGCTGTGTAGAGGCTTCATGGAAATTCTACTGGTATCGACGTTATTGATCTTATTGATGTTTGTTTTTGCACTGTACGGAGTTCAAATCTACGGCGGTAGATTGGCTCGATGCAATGATCCGACTATACTCCGTCGCGAAGACTGCGTTGGAGTTTTCATGAGACGCGTGTTTGTCACCAAGATGAAACTGAAACCCGGACAAAATCAAACGTTCCCTTCGATGCTCGTGCCGAGAGTGTGGGCAAACCCCAAACGTTTTAGCTTCGATAACATCGGCGATGCTCTCCTGACACTGTTCGAAGTGCTCTCGTTCAAGGGATGGCTGGATGTTCGAGATGTACTGATAAAGGCTTTGGGTCCTGTTCACGCAATTTACATACATGTGTACATATTTCTGGGATGCATGATTGGTTTGACGTTGTTTGTCGGTGTTGTCATCGCGAATTACTCCGAGAACAAGGGAACGGCGCTGCTCACTGTCGATCAAAGGAGATGGTGTGATTTGAAGAAGAGATTGAAAATCGCGCAACCGCTACATCTCCCCCCGCGACCAAATAAAAGGAAAATAAGGGCTTTTGCCTATGACGTCACTCAAAATCTGGCTTTCAAGAGAGTGATCGCCTTCGTTGTTCTTATAAATAGTGCACTACTTGCAGTCACGTGGTCAAAATATTCCCGATACACGGAGCACTTGGCCCTAACTTCGGCTCTTCTAACATTGGTGTTCGTGGTCGAAGTTCTGCTGAAGACCATAGCGTTCACGCCCCGCGGATACTGGCAGAGTCGGCGCAACAGATACGATCTACTTGTAACCGTCGCTGGATGTATATGGATATTTATGCATTTTACGCTCAAGAACGATCTATCATATTTCGTCGGGTTCATGGTAGTGATACTCCGGTTCTTTACGATAACGGGCAAACACACCACACTCAAGATGTTGATGCTGACCGTCGGCGTCAGCGTCTGCAAGAGCTTCTTCATCATATTCGGCATGTTCTTGTTGGTGTTCTTCTATGCATTGGCCGGCACTATCGTGTTCGGAAATGTCAAATACGGTGAAGGAATTGGAAGACGCGCGAACTTCAACTCGCCGATCCACAGCGTGGCGATGCTGTTCCGCATCGTGACCGGCGAGGACTGGAACAAGATAATGCACGACTGCATGGTGGCGCCGCCCTACTGCACCCCCGCCGACAACTACTGGGAGACGGACTGCGGGAACTTCACCGCGTCGCTCGCTTACTTCTGCACTTTCTACGTCATCATCACGTACATCGTGCTCAACTTGCTTGTGGCCATCATAATGGAGAACTTTTCATTATTTTATTCTAACGAAGAAGATGCCCTACTATCGTACGCCGATATAAGAAATTTTCAGAACACTTGGAACATTGTGGATGTACACCAAAAAGGTGTTATACCGGTTAGGAAGGTGAAGTTCATATTACGTTTATTAAAAGGTCGCTTGGAATGCGACACTCACAAAGAGCGCCTCCTGTTCAAATACATGTGCTACGAGCTGGAGCGGCTCCACAACGGCGAGGACGTTACATTCCATGACGTCATCAATATGCTGTCTTACCGAACTGTGGACATTCGAAAGTCATTACAAATGGAGGAGTTGTTAGCGAGGGAAGAGTTTGAATTTCTCATTGAAGAGGAAGTAGCGAAGCAGACTATCCGGACTTGGTTGGAAGGCTGCCTTAAGAAAATAAGAGCAAACAGCAGCAAACAGCAAACCAGTCTTATTGCTGGATTGCGTAAGACAAACGAACAAGCGGTCGATATGAGCGGCGAAAAAGACAAAGAGAAATCGGATACTGAAGCTCAACAAACTGTCACCGCAACCGGCCGCGTTGAAATGACTGAATCTGCTTCTCAGCCTGCTATGTCAAATATTACATCTTCGTCGTTTGACTCACAACCATCGAAGCGATCTTCCGCAAAAGCTCAATTTAAACGACCGTGCTTACCATCCGTCACGGTGCCAAGACCAGAAAGTCCCATTAAAAAATATCTTCAACCAACCCTCAGCGACCCGCATCCTGCACTTAAGAAATCCCCACCGGTTATGAAAAGCAACAGTCGCACGACGCACAACACGCACGCCAGCGCCGCCCGCGAGCAGCCCGCGCTCCACGACGTGCGCTCATGGTGGACGGCGCAGCTCGGCAGACATCCGCTCGTCGACACCGAATGA
Protein
MLGRKQSLKGEPVLADYGPEESLNESADIEWVNKLWVRRILRLCALLSLMSVSLNTPKSFEKYPYLQTITFVVDCCVTLLFTAEMIAKMHIRGILKGDVAYLKDHWCQFDASMVFFLWVSVLLQMFELTGIVPRYSYLSILRAPRPLIMIRFLRVFLKFSMPKSRINQIFKRSSQQIYNVTLFFLFFMSLYSLLGVQFFGELTHHCVRNNTHPSDITINSLAIPDTFCSPDPDSGYQCPSGMKCMKLNLSKYIMGFNGFEEFTTSLFTVYQASSQEGWVFIMYRAIDSLPTWRSALYFSTMIFFLAWLVKNVFIAVITETFNEIRVQFQQMWGVRNPITKGSTTQFFTGDDNGWKLVTIDENKHSGTAPDIFHRLLRSAYFRLLVMSAVLANGIITASMQFHHDGNPREYFYQKYYYIEIAFTIFLDLEALLKIWCLGLKGYFKHSVHKFELLLAIGTTLHIIPQLYMSAFTYFQVLRVVRLIKASPILEGFVYKIFGPGKKLGSLIIFTMCLLIISSSISMQLFCFLCEFTKFETFDEAFMSMFQILTQEAWVEVMDETMVRTSQTLTPLVAIYFILYHLFVTLIVLSLFVAVILDNLELDEDIKKLKQLKYRQQSAEIKESLPFRLRIFEKFPDSPQMTKLHKVPGDFNLPKVRESFMRQFVCEVEGEEEAGGAGPGGADLSRRTFEYISVAKIAFPYRKRCLVKTLVVAPPSQRPSSALRRHVVTSIIEDSNNHRPLLGDSAMLATGGKSGLKPQGTISSAKQLRVDQKKFGSRSIRRSVRSGSIKLKQTYEHLLENGDIGAASRVVPSSRARPPYLDIRLLQAKRQQAEMRRNQREEDLRENHPLFDTPLLIVPRESRFRKICRAIVDARYDARLRDPITGNERKVHYKSFHNFLGLVTYMDWVMIMVTTLSCLSMMFETPTYRVMENFVLQIAEYGFVIFMSLELALKILADGLFFTPKAYLKDAAAVLDVFIYIVSLTFLCWMPRRVPPGSPAQMLMILRCVRPLRIFTLVPHMRKVVYELCRGFMEILLVSTLLILLMFVFALYGVQIYGGRLARCNDPTILRREDCVGVFMRRVFVTKMKLKPGQNQTFPSMLVPRVWANPKRFSFDNIGDALLTLFEVLSFKGWLDVRDVLIKALGPVHAIYIHVYIFLGCMIGLTLFVGVVIANYSENKGTALLTVDQRRWCDLKKRLKIAQPLHLPPRPNKRKIRAFAYDVTQNLAFKRVIAFVVLINSALLAVTWSKYSRYTEHLALTSALLTLVFVVEVLLKTIAFTPRGYWQSRRNRYDLLVTVAGCIWIFMHFTLKNDLSYFVGFMVVILRFFTITGKHTTLKMLMLTVGVSVCKSFFIIFGMFLLVFFYALAGTIVFGNVKYGEGIGRRANFNSPIHSVAMLFRIVTGEDWNKIMHDCMVAPPYCTPADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADIRNFQNTWNIVDVHQKGVIPVRKVKFILRLLKGRLECDTHKERLLFKYMCYELERLHNGEDVTFHDVINMLSYRTVDIRKSLQMEELLAREEFEFLIEEEVAKQTIRTWLEGCLKKIRANSSKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSSSFDSQPSKRSSAKAQFKRPCLPSVTVPRPESPIKKYLQPTLSDPHPALKKSPPVMKSNSRTTHNTHASAAREQPALHDVRSWWTAQLGRHPLVDTE

Summary

EMBL
NWSH01000880    PCG73739.1    ODYU01005527    SOQ46461.1    AGBW02011023    OWR47361.1    + More
KQ459601    KPI93823.1    KZ150090    PZC73681.1    KK852854    KDR15005.1    AJWK01005808    AJWK01005809    GL440425    EFN65909.1    CH477406    EAT41587.1    JXUM01106498    JXUM01106499    JXUM01106500    KQ565061    KXJ71397.1    GL449385    EFN82823.1    JXUM01123880    KQ566765    KXJ69843.1    GAMC01019301    JAB87254.1    AXCN02000308    CH902625    EDV35074.1    KQ434896    KZC10715.1    ADMH02001019    ETN64412.1    GFDL01005116    JAV29929.1    DS231832    EDS31804.1    OUUW01000015    SPP88692.1    CH379064    EAL31876.2    DS235088    EEB11709.1    KK107185    EZA55766.1    KPU75421.1    KZ288466    PBC25433.1    CH954180    EDV47107.2    KQ971316    EEZ98774.1    QOIP01000012    RLU15691.1    KRT06627.1    CM000162    EDX01669.1    KRK06286.1    SPP88693.1    AE014298    ABW09413.2    GL888128    EGI66812.1    AAF48365.4    KRK06285.1    GL762111    EFZ22101.1    AY160083    AAN77520.1    KQ982320    KYQ57812.1    CH916370    EDW00557.1    KQ981897    KYN33680.1    CH933810    EDW06906.2    CH963851    EDW75402.2    NNAY01001526    OXU23683.1    ADTU01025480    KQ978957    KYN26994.1    JRES01001303    KNC23762.1    CH940651    EDW65138.2    GAMC01019300    JAB87255.1    ACPB03007816    CP012528    ALC49289.1    AAAB01008978    EAA43664.5    CCAG010006707    CH480835    EDW48859.1    JXJN01005871    JXJN01020416    UFQS01000473    UFQT01000473    SSX04268.1    SSX24633.1    APCN01002746    APCN01002747    GFDL01005121    JAV29924.1    KB631903    ERL87021.1    APGK01042136    APGK01042137    APGK01042138    KB741002    ENN75731.1    KQ460398    KPJ15141.1    GBXI01016234    JAC98057.1    GDHF01024090    GDHF01009687    JAI28224.1    JAI42627.1    GDHF01006493    JAI45821.1    GGMS01017130    MBY86333.1    ABLF02028720    ABLF02028724    JH431152    GDIP01222013    JAJ01389.1    GDIQ01057335    JAN37402.1    GDIP01220964    JAJ02438.1    GDIP01009467    JAM94248.1    GDIP01102871    GDIP01044229    LRGB01000640    JAM59486.1    KZS17403.1    GDIQ01003669    JAN91068.1    LJIJ01000016    ODN05809.1    GEFM01006904    JAP68892.1    GDIQ01084725    JAN10012.1    GDIP01037486    JAM66229.1    GEGO01007586    JAR87818.1    GDRN01086928    JAI61105.1    GDRN01086932    JAI61102.1    KU681457    AOR07238.1   
Pfam
PF00520   Ion_trans        + More
PF17849   OB_Dis3
PF00773   RNB
PF00005   ABC_tran
PF00664   ABC_membrane
PF00096   zf-C2H2
PF07776   zf-AD
PF05907   DUF866
PF11502   BCL9
Interpro
IPR005821   Ion_trans_dom        + More
IPR027359   Volt_channel_dom_sf       
IPR028823   NALCN       
IPR041505   Dis3_CSD2       
IPR001900   RNase_II/R       
IPR012340   NA-bd_OB-fold       
IPR011527   ABC1_TM_dom       
IPR027417   P-loop_NTPase       
IPR036640   ABC1_TM_sf       
IPR003439   ABC_transporter-like       
IPR017871   ABC_transporter_CS       
IPR003593   AAA+_ATPase       
IPR012934   Znf_AD       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR024670   BCL9_beta-catenin-bd_dom       
IPR008584   CXXC_Zn_binding_euk       
SUPFAM
SSF50249   SSF50249        + More
SSF90123   SSF90123       
SSF52540   SSF52540       
SSF57667   SSF57667       
Gene 3D
PDB
6J8J     E-value=9.02152e-42,     Score=434

Ontologies

Topology

Length:
1759
Number of predicted TMHs:
19
Exp number of AAs in TMHs:
435.643249999998
Exp number, first 60 AAs:
2.88773
Total prob of N-in:
0.73662
inside
1  -  64
TMhelix
65  -  87
outside
88  -  110
TMhelix
111  -  133
inside
134  -  176
TMhelix
177  -  199
outside
200  -  294
TMhelix
295  -  317
inside
318  -  379
TMhelix
380  -  402
outside
403  -  416
TMhelix
417  -  439
inside
440  -  451
TMhelix
452  -  474
outside
475  -  505
TMhelix
506  -  528
inside
529  -  570
TMhelix
571  -  593
outside
594  -  897
TMhelix
898  -  920
inside
921  -  932
TMhelix
933  -  955
outside
956  -  969
TMhelix
970  -  989
inside
990  -  1033
TMhelix
1034  -  1056
outside
1057  -  1149
TMhelix
1150  -  1172
inside
1173  -  1225
TMhelix
1226  -  1248
outside
1249  -  1257
TMhelix
1258  -  1280
inside
1281  -  1313
TMhelix
1314  -  1332
outside
1333  -  1351
TMhelix
1352  -  1374
inside
1375  -  1438
TMhelix
1439  -  1461
outside
1462  -  1759
 
 

Population Genetic Test Statistics

Pi
334.560847
Theta
186.425122
Tajima's D
2.178515
CLR
0.521174
CSRT
0.906504674766262
Interpretation
Uncertain
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