Gene

KWMTBOMO01963

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr4(-):8826133-8827401      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.315

CDS

ATGACATTTGACATCAAGACAGCTTTCTTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTACTGAAGTAGTTTGCCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAGTCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCCTAGGAAAAGATAAGAAAAAGATCGAAGCTATTTTGAAGAAACTTGAAACCAAATTTCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAATTCTTACTCAGAGATCCTACATAAATGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATAGGGAAGCAGTGGGAAGTTTATTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATGTAGTTAGCAGGAAGGTCGAAAACCCCACTAGAGAAGACGTTACAAAAGTGAAGAAAATATTCAAATATTTAGTGGGAACCAAACATAAAGGCATTTTATTCAAACGAAACAAACCGATAGAGAGCATCGATGCTTACAGCGACTCGGATTATGCTGGAGACCCATTGACGAGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCCGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAATAACCGGTTTGGACATAAAAATAAATCTACATGTTGATAACCAAAGTTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGGTCGAAGCACATAGACGTGCGGTACCATTTTATACATGAACACTTCGTGCATGGATTAATAAATATTAGCTACTGTCCCACAGAAATTCAGTTAGCTGACGTAATGACAAAACCATTGTCAAAAGTAAAATTTGAAAGACACTGTGCAAGATTAATGCATGTATAG

Protein

MTFDIKTAFLYGELSDEVYMKLPVGYETNCNTTEVVCRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVLGKDKKKIEAILKKLETKFQMKKNENPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNVVSRKVENPTREDVTKVKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEITGLDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSKVKFERHCARLMHV

Similarity

Belongs to the terpene synthase family.

Uniprot

A0A1B6FNY3   A0A0A9WDS7   A0A0A9W6J9   A0A0A9YCF4   A0A1B6C2D3   A0A0J7KC73   + More
A0A0V0G477   A0A0A9WIY3   A0A0A9Z2D6   A0A0A9X817   A0A146M489   A0A0A9YZ93   A0A0A9X3Z4   A0A0A9XEU3   A0A0A9YMV4   A0A1Y1LVN7   X1WLH4   A0A0K8TKJ8   A0A2S2NXV8   A0A2N9I7V5   A0A2N9GBS9   X1X8M7   A0A1Y1KNM9   X1XTZ0   A0A146LHR9   A0A2N9GCE7   A0A0A9ZF63   A0A2N9GRB2   A0A139WJX6   A0A0J7K725   A0A2N9FRN5   A0A0J7KRG1   A0A2N9J916   A0A2N9I8Q5   A0A2N9ELY1   K7JC60   A0A2N9FZ01   A0A2N9GRR2   A0A2N9FQJ1   A0A2N9HJ76   A0A0V1NCR1   A0A2N9I6N4   A0A2N9H6B2   E5T1Z4   A0A2N9FV67   A0A2N9EK90   A0A2N9EIR6   A0A2N9EPH6   A0A2N9IGN4   A0A2N9GA80   A0A2N9GGS7   A0A2N9GZN8   A0A2N9FW82   A0A2N9ETC8   A0A2N9GBF3   A0A2N9FA36   A0A2N9I1C6   A0A0J7KE66   A0A2N9F704   A0A2N9HKJ4   A0A2N9FA25   A0A151SYU6   H3GB98   A0A2N9GRZ0   A0A2N9H0T6   A0A2N9ID98   A0A2N9GD91   X1WST7   A0A2N9I1P0   A0A1Y1MYL8   A0A1Y1MYL6   A0A2N9IUP8   A0A2N9I9F7   A0A085MTW9   A0A1Y1N3G5   A0A2N9FGL6   K7JAV0   A0A2N9HW10   A0A2N9J5P5   A0A2N9H4R5   A0A2N9EEQ1   A0A0P4YJD7   A0A2N9H4V1   A0A2N9EE21   A0A1Y1M571   K7JAZ3   A0A0P5DII6   I1PXS4   A0A0V0WRK3   A0A2N9FPD9   A0A2N9IR42   A0A3L6N186   A0A0N7ZJE6   A0A0P6AI73   A0A2N9ISP1   A0A0J7N098   A0A0N7ZV66   Q0J867  

Pubmed

25401762    26823975    28004739    26369729    18362917    19820115    + More
20075255    22057054    16946064    24929829    30202022    16381971   

EMBL

GECZ01017843    JAS51926.1    GBHO01040574    JAG03030.1    GBHO01040573    JAG03031.1    + More
GBHO01016409    JAG27195.1    GEDC01029908    JAS07390.1    LBMM01009639    KMQ87973.1    GECL01003258    JAP02866.1    GBHO01035865    JAG07739.1    GBHO01006096    JAG37508.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    GDHC01005053    JAQ13576.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    GBHO01031779    JAG11825.1    GBHO01024362    JAG19242.1    GBHO01012744    JAG30860.1    GEZM01048830    JAV76370.1    ABLF02026843    ABLF02042027    GDAI01002967    JAI14636.1    GGMR01009345    MBY21964.1    OIVN01004910    SPD19931.1    OIVN01001707    SPC96839.1    GEZM01078128    GEZM01078127    JAV63002.1    ABLF02043571    ABLF02045585    ABLF02057174    ABLF02063637    ABLF02063640    GDHC01010945    JAQ07684.1    OIVN01001729    SPC97049.1    GBHO01003079    JAG40525.1    OIVN01002268    SPD02135.1    KQ971338    KYB28117.1    LBMM01012536    KMQ86167.1    OIVN01001091    SPC89740.1    LBMM01003976    KMQ92933.1    OIVN01006432    SPD33020.1    OIVN01005024    SPD20514.1    OIVN01000183    SPC75833.1    AAZX01004151    OIVN01001309    SPC92453.1    OIVN01002622    SPD05126.1    OIVN01001052    SPC89229.1    OIVN01003897    SPD14257.1    JYDM01000512    KRZ81798.1    OIVN01004879    SPD19723.1    OIVN01002904    SPD07378.1    OIVN01001196    SPC91020.1    OIVN01000147    SPC75222.1    OIVN01000116    SPC74628.1    OIVN01000230    SPC76722.1    OIVN01005657    SPD23465.1    OIVN01001666    SPC96375.1    OIVN01001890    SPC98658.1    OIVN01002579    SPD04820.1    OIVN01001520    SPC94877.1    OIVN01000557    SPC82046.1    OIVN01001669    SPC96464.1    OIVN01000945    SPC87766.1    OIVN01004563    SPD18125.1    LBMM01008978    KMQ88491.1    OIVN01000609    SPC82932.1    OIVN01003569    SPD12194.1    OIVN01000681    SPC84018.1    CM003612    KYP59970.1    DS568115    OIVN01002256    SPD02034.1    OIVN01002680    SPD05612.1    OIVN01005312    SPD21871.1    OIVN01001762    SPC97349.1    ABLF02066511    OIVN01004603    SPD18338.1    GEZM01017328    JAV90763.1    GEZM01017329    JAV90762.1    OIVN01006259    SPD29117.1    OIVN01005059    SPD20680.1    KL367655    KFD60665.1    GEZM01013586    JAV92451.1    OIVN01000823    SPC86071.1    AAZX01006115    AAZX01021021    OIVN01004167    SPD15821.1    OIVN01006372    SPD31671.1    OIVN01002812    SPD06621.1    OIVN01000042    SPC73124.1    GDIP01229956    JAI93445.1    OIVN01002854    SPD06945.1    OIVN01000036    SPC73022.1    GEZM01040221    GEZM01040220    JAV80932.1    AAZX01004557    GDIP01156971    JAJ66431.1    JYDK01000067    KRX78390.1    OIVN01001022    SPC88819.1    OIVN01006160    SPD26619.1    MRCU01000010    RKK11096.1    GDIP01239569    JAI83832.1    GDIP01034138    JAM69577.1    OIVN01006233    SPD28466.1    LBMM01012672    KMQ86060.1    GDIP01209409    JAJ13993.1    AP008214    BAF22848.2   

Proteomes

UP000036403    UP000007819    UP000007266    UP000002358    UP000054924    UP000075243    + More
UP000005238    UP000007306    UP000054673    UP000270866   

Pfam

PF07727   RVT_2        + More
PF13976   gag_pre-integrs
PF00665   rve
PF00098   zf-CCHC
PF01397   Terpene_synth
PF03936   Terpene_synth_C

Interpro

IPR013103   RVT_2        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR005630   Terpene_synthase_metal-bd       
IPR008930   Terpenoid_cyclase/PrenylTrfase       
IPR034741   Terpene_cyclase-like_1_C       
IPR036965   Terpene_synth_N_sf       
IPR001906   Terpene_synth_N       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF48576   SSF48576       
SSF48239   SSF48239       

Gene 3D

3.30.420.10     1.10.600.10     1.50.10.130    

ProteinModelPortal

A0A1B6FNY3   A0A0A9WDS7   A0A0A9W6J9   A0A0A9YCF4   A0A1B6C2D3   A0A0J7KC73   + More
A0A0V0G477   A0A0A9WIY3   A0A0A9Z2D6   A0A0A9X817   A0A146M489   A0A0A9YZ93   A0A0A9X3Z4   A0A0A9XEU3   A0A0A9YMV4   A0A1Y1LVN7   X1WLH4   A0A0K8TKJ8   A0A2S2NXV8   A0A2N9I7V5   A0A2N9GBS9   X1X8M7   A0A1Y1KNM9   X1XTZ0   A0A146LHR9   A0A2N9GCE7   A0A0A9ZF63   A0A2N9GRB2   A0A139WJX6   A0A0J7K725   A0A2N9FRN5   A0A0J7KRG1   A0A2N9J916   A0A2N9I8Q5   A0A2N9ELY1   K7JC60   A0A2N9FZ01   A0A2N9GRR2   A0A2N9FQJ1   A0A2N9HJ76   A0A0V1NCR1   A0A2N9I6N4   A0A2N9H6B2   E5T1Z4   A0A2N9FV67   A0A2N9EK90   A0A2N9EIR6   A0A2N9EPH6   A0A2N9IGN4   A0A2N9GA80   A0A2N9GGS7   A0A2N9GZN8   A0A2N9FW82   A0A2N9ETC8   A0A2N9GBF3   A0A2N9FA36   A0A2N9I1C6   A0A0J7KE66   A0A2N9F704   A0A2N9HKJ4   A0A2N9FA25   A0A151SYU6   H3GB98   A0A2N9GRZ0   A0A2N9H0T6   A0A2N9ID98   A0A2N9GD91   X1WST7   A0A2N9I1P0   A0A1Y1MYL8   A0A1Y1MYL6   A0A2N9IUP8   A0A2N9I9F7   A0A085MTW9   A0A1Y1N3G5   A0A2N9FGL6   K7JAV0   A0A2N9HW10   A0A2N9J5P5   A0A2N9H4R5   A0A2N9EEQ1   A0A0P4YJD7   A0A2N9H4V1   A0A2N9EE21   A0A1Y1M571   K7JAZ3   A0A0P5DII6   I1PXS4   A0A0V0WRK3   A0A2N9FPD9   A0A2N9IR42   A0A3L6N186   A0A0N7ZJE6   A0A0P6AI73   A0A2N9ISP1   A0A0J7N098   A0A0N7ZV66   Q0J867  

KEGG

101736913    no KO assigned | (RefSeq) uncharacterized LOC101736913

GO

GO:0003676   GO:0000943   GO:0015074   GO:0008270   GO:0016021   GO:0000287   GO:0010333  

PANTHER

PTHR11439  

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00348

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00559

outside

1  -  398

 

 

Pi

367.868575

Theta

210.925049

Tajima's D

2.211715

CLR

41.095455

CSRT

0.914754262286886

Interpretation

Uncertain