SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01959
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.219
 

Sequence

CDS
ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAATTGACGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAGCATCTCATTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGTGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTATGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA
Protein
MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLTSKMLGVLNRAKRYFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVCFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Summary

EMBL
AY359886    AAQ57129.1    AB126052    BAD86652.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01004433    JAR90971.1    GEFM01002419    JAP73377.1    GEGO01001118    JAR94286.1    GFAA01002514    JAU00921.1    GEFM01006417    JAP69379.1    GEFM01002324    JAP73472.1    GFAC01005646    JAT93542.1    MRZV01000639    PIK46517.1    GEFM01005882    JAP69914.1    GEGO01003312    JAR92092.1    GEGO01004630    JAR90774.1    GDRN01111277    JAI56804.1    GBIH01002577    JAC92133.1    GEFM01006421    JAP69375.1    GFAA01002657    JAU00778.1    LSMT01000297    PFX20951.1    GFAA01002479    JAU00956.1    GEGO01003111    JAR92293.1    NSIT01000218    PJE78268.1    FLMD02000154    SCV66010.1    GFAC01005665    JAT93523.1    GFAC01000861    JAT98327.1    FLMD02000280    SCV66640.1    GEGO01002473    JAR92931.1    GDRN01111334    JAI56796.1    NSIT01000412    PJE77717.1    GEGO01004295    JAR91109.1    GFAA01000066    JAU03369.1    GFAA01002385    JAU01050.1    GEGO01003794    JAR91610.1    GADI01001229    JAA72579.1    GEGO01003427    JAR91977.1    AAGJ04079835    GEGO01003518    JAR91886.1    GFAA01003161    JAU00274.1    GFAC01005670    JAT93518.1    GEGO01002794    JAR92610.1    GEGO01004857    JAR90547.1    AAGJ04090645    NSIT01000239    PJE78188.1    AAGJ04096877    GFAA01002726    JAU00709.1    AAGJ04095885    GEGO01004056    JAR91348.1    NSIT01000538    PJE77518.1    LSMT01000588    PFX15986.1    KZ505886    PKU43598.1    GEGO01004132    JAR91272.1    QRBI01000146    RMB99817.1    AGCU01164164    AGCU01093320    GFAC01000920    JAT98268.1    NSIT01000271    PJE78081.1    NSIT01000477    PJE77602.1    AGCU01148809    GEGO01005479    JAR89925.1    NEDP02004020    OWF47171.1    GEFM01006250    JAP69546.1    AGCU01081420    AGCU01055496    AGCU01168427    GANP01010944    JAB73524.1    AGCU01068175    GFAC01005673    JAT93515.1    AGCU01096477    AGCU01046616    GEGO01007438    JAR87966.1    AGCU01003726    AGCU01135984    GEGO01004422    JAR90982.1    QRBI01000171    RMB96954.1    AGCU01111641    QRBI01000112    RMC10390.1    GACK01009888    JAA55146.1    AGCU01190758    AGCU01156992    AGCU01018596    GEGO01007187    JAR88217.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF01425   Amidase
PF03372   Exo_endo_phos
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF75304   SSF75304       
Gene 3D

Ontologies

Topology

Length:
329
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.713669999999999
Exp number, first 60 AAs:
0.71346
Total prob of N-in:
0.04468
outside
1  -  329
 
 

Population Genetic Test Statistics

Pi
46.166518
Theta
33.406614
Tajima's D
1.92985
CLR
1.398134
CSRT
0.871756412179391
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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