Gene

KWMTBOMO01958

Pre Gene Modal

BGIBMGA006233

Annotation

PREDICTED:_tRNA-dihydrouridine(20)_synthase_[NAD(P)+]-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(+):8726972-8729892      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.591

CDS

ATGGTCAGAATAGGAACATTGCCAATGAGACTTTTGGCTCTAAAATACGGTGCTGACATTGTTTATACTGAAGAGCTTATAGACTGGAAGTTTTTACGATCTAAGAGAAGATTTAACGACATACTTAACACAGTAGATTATGTTGATCAAACAGATGGAACTATTGTATTCCGCACTTGTGAAGAAGAAAAGAAAAAAGTGGTTTTACAACTCGGGACGTGTGATGAAGCCAGAGCTTTAAAGGTTGCCAAATTAGTGGAACATGATGTGGCAGCAATAGATATTAATATGGGATGCCCAAAAGAATTTTCTATAAAAGGTGGCATGGGTGTGGCACTATTGTCAAAGCCAGATAAGGCTTATCAAATTTTAAAAACACTAGTTGACAATTTATCTATTCCTGTGACATGTAAGATAAGAATACTGAAGACACCAGAAGCCACTTTAGAGTTGGTAAATAAATTGGTGAGTTCAGGAATCAAGGCAATAGCTGTGCATGGTCGTACGAAAGATGAGAGACCACAGCATGCTGTCCATACTGACATTATTCATTATGTTGCAGATAACATATCAATTCCAGTCATAGCAAATGGAGGATCTAAAGAAATTGAAAAGCATAGTGATGTAGCTATATTCAAAGAGATGACTGGTTCAAGTAGTGTGATGTTAGCTCGTGCCGCAGAATGGAATTGTTCAATATTCAGAAAAGAAGGATTATTACCGATGGATACTGTAATAAAAGATTATCTTAAACTAGCTGTTGATTATGATAATTCACCTTCAAATACAAAGTACTGCATTCAAAACATTTTAAGAGATTTGCAAGAAACACCTAGAGGAAGACAGTTCTTGGAAAGTCAAACTTTAGAGCAAATATGCTCCATTTGGGATTTAGGAGGATACTGTTTAGAAAAACAATCACAGTTCCAAAAGATGGGGATTCAAGGAAGGTGGCAAGTCTGTCCTAAACAACTAGAACCTCCACAAAAAAAGGCAAAACATTATAATGAAGAAGATTTGTGTGATGCAATACAAATGAAAGTATCCTTTATTCGAGCAAATTTCAATGACTTGAATCTACCTAAAAGCAGACTTCATGCTTGGGCTGGAAAGAATGGGTACAGTTTGCCAAAGTATAACACTCAACATATTGAGAAACTGTTTCGTACAATAGTGACATTTAATGAGAAAAAGTATACATCAACATTTTGGGAAAAAAATAAAAAATTTGCAGAGCAAGGTGCTGCTTTATTTAAGGAACTTTATTTTGGTTGA

Protein

MVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTKDERPQHAVHTDIIHYVADNISIPVIANGGSKEIEKHSDVAIFKEMTGSSSVMLARAAEWNCSIFRKEGLLPMDTVIKDYLKLAVDYDNSPSNTKYCIQNILRDLQETPRGRQFLESQTLEQICSIWDLGGYCLEKQSQFQKMGIQGRWQVCPKQLEPPQKKAKHYNEEDLCDAIQMKVSFIRANFNDLNLPKSRLHAWAGKNGYSLPKYNTQHIEKLFRTIVTFNEKKYTSTFWEKNKKFAEQGAALFKELYFG

Uniprot

H9J9P0   A0A2W1BZV7   A0A2A4JSU6   A0A2H1WKN8   A0A194RBE1   A0A194PKH8   + More
A0A212FBL7   A0A0L7LVX4   D6WK97   A0A2P8Y0Q7   A0A1Y1M4M2   U5ET02   A0A2J7QW98   A0A232FEP3   K7ILU3   A0A1Q3FW48   A0A1Q3FW59   A0A0M9A0M2   A0A088A137   W8BUD9   A0A182G406   A0A034WHY2   A0A0J7KVD8   A0A0K8VGY7   E2AW12   Q16MZ6   A0A0L7QUC0   E2BHB7   F4WR32   A0A1B6DIP9   A0A1B6CGX9   A0A195C3B5   A0A2A3ENN3   N6TIA7   A0A195FKV0   U4UI56   A0A151J324   A0A151X0T9   A0A154P0K6   A0A026WGW3   A0A023F3D3   B3N123   A0A158NVG8   T1ICE0   A0A1W4VV90   B4H059   A0A3B0K377   B5DMU8   B4Q2R8   B3NVU8   A0A1I8NNM8   Q7K0H3   Q9VY45   A0A0A9XKU3   A0A1B6FVG1   A0A1B6LNA6   B4IGB8   A0A084WFE5   B4JJ10   B4R4N5   A0A182R245   B4L2Q0   B4ND40   A0A1B0G1R2   A0A182JM36   A0A1I8M5P6   A0A1A9UHP4   A0A182XYC0   A0A151I5N7   A0A182S7Z2   A0A1B0ABY1   A0A1A9WAH1   A0A182UE82   A0A1A9Y1F8   A0A1B0ARY0   A0A0M3QZE5   A0A182WZ85   A0A182N126   A0A2M4ALT3   A0A182VCG1   A0A2M4ALS8   A0A2M4AM63   A0A182HMQ5   Q7Q4V6   A0A182FIC2   E0VBT5   A0A182PVR9   A0A182Q853   A0A182VVG8   W5JDW9   A0A2S2R118   A0A182MQ90   A0A2M3Z6I8   A0A2M3Z6N5   A0A2M3Z6G4   A0A2M4BKY6   A0A2M4BKU9   A0A2M4BKP8   A0A1L8DRD6   A0A1J1IMU1  

Pubmed

19121390    28756777    26354079    22118469    26227816    18362917    + More
19820115    29403074    28004739    28648823    20075255    24495485    26483478    25348373    20798317    17510324    21719571    23537049    24508170    25474469    17994087    21347285    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    26823975    24438588    25315136    25244985    12364791    14747013    17210077    20566863    20920257    23761445   

EMBL

BABH01041828    KZ149895    PZC78787.1    NWSH01000672    PCG74899.1    ODYU01009315    + More
SOQ53645.1    KQ460398    KPJ15148.1    KQ459601    KPI93832.1    AGBW02009295    OWR51132.1    JTDY01000001    KOB79534.1    KQ971342    EFA03962.1    PYGN01001074    PSN37845.1    GEZM01042268    JAV79988.1    GANO01003000    JAB56871.1    NEVH01009765    PNF32855.1    NNAY01000358    OXU28909.1    GFDL01003226    JAV31819.1    GFDL01003228    JAV31817.1    KQ435776    KOX74920.1    GAMC01009629    JAB96926.1    JXUM01142709    KQ569464    KXJ68617.1    GAKP01005222    JAC53730.1    LBMM01002867    KMQ94268.1    GDHF01014158    JAI38156.1    GL443213    EFN62434.1    CH477844    EAT35713.1    KQ414735    KOC62215.1    GL448287    EFN84886.1    GL888284    EGI63259.1    GEDC01011766    JAS25532.1    GEDC01024639    JAS12659.1    KQ978350    KYM94681.1    KZ288215    PBC32651.1    APGK01025445    KB740591    ENN80149.1    KQ981512    KYN40887.1    KB632226    ERL90291.1    KQ980313    KYN16716.1    KQ982617    KYQ53784.1    KQ434792    KZC05456.1    KK107234    EZA54926.1    GBBI01002976    JAC15736.1    CH902650    EDV30058.2    ADTU01027153    ACPB03003015    CH479200    EDW29654.1    OUUW01000015    SPP88684.1    CH379064    EDY72755.2    CM000162    EDX01662.1    CH954180    EDV47113.1    AY069835    AAL39980.1    AE014298    BT031195    AAF48360.2    ABY20436.1    GBHO01022257    GDHC01007010    JAG21347.1    JAQ11619.1    GECZ01015746    JAS54023.1    GEBQ01014794    JAT25183.1    CH480835    EDW48852.1    ATLV01023338    KE525342    KFB48939.1    CH916370    EDW00551.1    CM000366    EDX17889.1    CH933810    EDW07848.2    CH964239    EDW82749.2    CCAG010007356    KQ976415    KYM90148.1    JXJN01002620    CP012528    ALC49283.1    GGFK01008386    MBW41707.1    GGFK01008403    MBW41724.1    GGFK01008387    MBW41708.1    APCN01004857    AAAB01008963    EAA12065.4    AAZO01000852    DS235042    EEB10841.1    AXCN02002174    ADMH02001831    ETN60989.1    GGMS01014496    MBY83699.1    AXCM01002210    GGFM01003391    MBW24142.1    GGFM01003399    MBW24150.1    GGFM01003368    MBW24119.1    GGFJ01004482    MBW53623.1    GGFJ01004483    MBW53624.1    GGFJ01004484    MBW53625.1    GFDF01005061    JAV09023.1    CVRI01000055    CRL01559.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000007266    UP000245037    UP000235965    UP000215335    UP000002358    UP000053105    UP000005203    UP000069940    UP000249989    UP000036403    UP000000311    UP000008820    UP000053825    UP000008237    UP000007755    UP000078542    UP000242457    UP000019118    UP000078541    UP000030742    UP000078492    UP000075809    UP000076502    UP000053097    UP000007801    UP000005205    UP000015103    UP000192221    UP000008744    UP000268350    UP000001819    UP000002282    UP000008711    UP000095300    UP000000803    UP000001292    UP000030765    UP000001070    UP000000304    UP000075900    UP000009192    UP000007798    UP000092444    UP000075880    UP000095301    UP000078200    UP000076408    UP000078540    UP000075901    UP000092445    UP000091820    UP000075902    UP000092443    UP000092460    UP000092553    UP000076407    UP000075884    UP000075903    UP000075840    UP000007062    UP000069272    UP000009046    UP000075885    UP000075886    UP000075920    UP000000673    UP000075883    UP000183832   

PRIDE

H9J9P0    Q7K0H3    Q9VY45   

Pfam

PF01207   Dus        + More
PF00035   dsrm
PF04433   SWIRM
PF14464   Prok-JAB

Interpro

IPR013785   Aldolase_TIM        + More
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       
IPR014720   dsRBD_dom       
IPR018517   tRNA_hU_synthase_CS       
IPR028090   JAB_dom_prok       
IPR007526   SWIRM       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689       

Gene 3D

3.20.20.70    

CDD

cd02801  DUS_like_FMN
cd00048  DSRM

ProteinModelPortal

H9J9P0   A0A2W1BZV7   A0A2A4JSU6   A0A2H1WKN8   A0A194RBE1   A0A194PKH8   + More
A0A212FBL7   A0A0L7LVX4   D6WK97   A0A2P8Y0Q7   A0A1Y1M4M2   U5ET02   A0A2J7QW98   A0A232FEP3   K7ILU3   A0A1Q3FW48   A0A1Q3FW59   A0A0M9A0M2   A0A088A137   W8BUD9   A0A182G406   A0A034WHY2   A0A0J7KVD8   A0A0K8VGY7   E2AW12   Q16MZ6   A0A0L7QUC0   E2BHB7   F4WR32   A0A1B6DIP9   A0A1B6CGX9   A0A195C3B5   A0A2A3ENN3   N6TIA7   A0A195FKV0   U4UI56   A0A151J324   A0A151X0T9   A0A154P0K6   A0A026WGW3   A0A023F3D3   B3N123   A0A158NVG8   T1ICE0   A0A1W4VV90   B4H059   A0A3B0K377   B5DMU8   B4Q2R8   B3NVU8   A0A1I8NNM8   Q7K0H3   Q9VY45   A0A0A9XKU3   A0A1B6FVG1   A0A1B6LNA6   B4IGB8   A0A084WFE5   B4JJ10   B4R4N5   A0A182R245   B4L2Q0   B4ND40   A0A1B0G1R2   A0A182JM36   A0A1I8M5P6   A0A1A9UHP4   A0A182XYC0   A0A151I5N7   A0A182S7Z2   A0A1B0ABY1   A0A1A9WAH1   A0A182UE82   A0A1A9Y1F8   A0A1B0ARY0   A0A0M3QZE5   A0A182WZ85   A0A182N126   A0A2M4ALT3   A0A182VCG1   A0A2M4ALS8   A0A2M4AM63   A0A182HMQ5   Q7Q4V6   A0A182FIC2   E0VBT5   A0A182PVR9   A0A182Q853   A0A182VVG8   W5JDW9   A0A2S2R118   A0A182MQ90   A0A2M3Z6I8   A0A2M3Z6N5   A0A2M3Z6G4   A0A2M4BKY6   A0A2M4BKU9   A0A2M4BKP8   A0A1L8DRD6   A0A1J1IMU1  

PDB

4XP7     E-value=3.11529e-98,     Score=915

KEGG

101738345    K05543 tRNA-dihydrouridine synthase 2 [EC:1.3.1.91] | (RefSeq) tRNA-dihydrouridine(20) synthase [NAD

GO

GO:0017150   GO:0050660   GO:0003723   GO:0003677   GO:0003824   GO:0008033   GO:0008168   GO:0005737   GO:0016876   GO:0043039   GO:0004651   GO:0005634   GO:0055114  

Length:

424

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00477

Exp number, first 60 AAs:

0.00477

Total prob of N-in:

0.00542

outside

1  -  424

 

 

Pi

306.254535

Theta

215.091248

Tajima's D

1.445855

CLR

0

CSRT

0.773211339433028

Interpretation

Uncertain