Silkworm Genome Informatics Database

Gene

KWMTBOMO01956 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006232

Annotation

PREDICTED:_transcription_factor_Dp-1_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr4(+):8700832-8713739 View in EpiBrowser

Full name

Transcription factor

E2F

Location in the cell

Nuclear Reliability : 2.906

CDS

ATGTCCCAAACTAATAGTACAATAAATTACCTTATCCATGATGCTAACGGACTTCCTCAAGTGGTGAAAGTGCTGGAAACTACAAGTAAACCACTGATTGCTCAAATCGAAGCAGAACCGAAAGAGAGTCCAGTTAAAATTGTTACTGTATCACCTGTTCCGGTCAAATGTGCAAAGATACCTGTTCCAGCCAGTTTTGCAAGATTTGGAATTGTTCAATACAAACAAAAACCTGCACAAAGACCTTGTGATACAGTGACACACTTTCAAAAGATAGCTCCGAAATTAGAACCTGTTGGAATTCATGGTTTCTTGACTCGAGCTGACTCTGATCTCGGCCATAAATATCGAAGACGAAGAATGTCCCACGCGTCGCGTAAACGACACGATCCCGATAATGAACCTGTAATGGAGTACACAACCAAAAGACGTAAACATGCTGATAAAGTTGGCAAAGGACTAAGACATTTTTCAATGAAAGTTTGTGAAAAAGTAAGAACAAAAGGTTTCACATCATACAACGAAGTAGCAGATGAATTAGTTTTAGAATTTGCTGCTGGAATACATGGCTCTGGTGATGGTCAACAATATGATCAAAAGAATATACGACGTAGAGTTTATGATGCACTCAATGTTCTCATGGCTATGAATATAATATCAAAAGACAAAAAAGAAATCAGGTGGCTGGGTCTACCTACTAACAGCGTACAGGAATGTAATGCCCTTGAAAAAGAAAAGCAACAAAAATTGGAACAGATACAGAAGAAAACACAACAGTTGCAAGAGTTAATTTTACAGCACATCTCATTTAAAAGTCTGATTGAACGAAATAAGGAAGCGGAAAATAAAGGTCTGAAACCATCACCATCATCAGCAATACATTTACCATTCATTGTTGTAAACACAAGTGATAAAGCATTAATTGATTGCAGTATTTCTAACGATAAAACTGAATACATGTTCAATTTTGACAAAAGATTTCAAATACATGATGATATAGATATTTTAAAAAGAATGGGTCTTTTATTTGGATTAGATAAAGGCGAATGTTCAGAAGAAGATATTGAGAGAGCAAAAAGCATGGTACCTAAATCGTTGGAAAGCTACGTAGAGCAAATGGCAAGAGGTGTTGTGTCAAAATTATCAGACATACTTCAAGAAGAAGAAATTGAAGAAGAGGTACTGGATGAAGAAATGTTAAAAGAAGCTGAGGCTGATGTAGATGCTGATGAACAAGAAGCAGAGGGGAATGATTATAGTGATGATAGCAGCGACGTCGATGTCTAG

Protein

MSQTNSTINYLIHDANGLPQVVKVLETTSKPLIAQIEAEPKESPVKIVTVSPVPVKCAKIPVPASFARFGIVQYKQKPAQRPCDTVTHFQKIAPKLEPVGIHGFLTRADSDLGHKYRRRRMSHASRKRHDPDNEPVMEYTTKRRKHADKVGKGLRHFSMKVCEKVRTKGFTSYNEVADELVLEFAAGIHGSGDGQQYDQKNIRRRVYDALNVLMAMNIISKDKKEIRWLGLPTNSVQECNALEKEKQQKLEQIQKKTQQLQELILQHISFKSLIERNKEAENKGLKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFDKRFQIHDDIDILKRMGLLFGLDKGECSEEDIERAKSMVPKSLESYVEQMARGVVSKLSDILQEEEIEEEVLDEEMLKEAEADVDADEQEAEGNDYSDDSSDVDV

Similarity

Belongs to the E2F/DP family.

Uniprot

H9J9N9 A0A2A4JS83 A0A2W1BUR4 A0A2H1WCX9 A0A194RD00 A0A2A4JT76 + More
A0A194PM70 A0A088ATI5 A0A0M9ADG8 A0A0C9QT03 A0A0C9R506 A0A2J7RPL0 A0A2A3EGR2 A0A1B6GVK8 A0A1B6J515 A0A1B6E6M2

Pubmed

19121390 28756777 26354079

EMBL

BABH01041823 NWSH01000672 PCG74897.1 KZ149895 PZC78788.1 ODYU01007831 + More
SOQ50935.1 KQ460398 KPJ15150.1 PCG74898.1 KQ459601 KPI93834.1 KQ435694 KOX80899.1 GBYB01006859 JAG76626.1 GBYB01006855 GBYB01011394 GBYB01011395 JAG76622.1 JAG81161.1 JAG81162.1 NEVH01001358 PNF42767.1 KZ288253 PBC30917.1 GECZ01003332 JAS66437.1 GECU01013450 JAS94256.1 GEDC01003774 JAS33524.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000005203 UP000053105 + More
UP000235965 UP000242457

PRIDE

H9J9N9 A0A088ATI5

Pfam

PF08781 DP + More
PF02319 E2F_TDP

Interpro

IPR036390   WH_DNA-bd_sf        + More
IPR003316   E2F_WHTH_DNA-bd_dom
IPR036388   WH-like_DNA-bd_sf
IPR038168   TF_DP_C_sf
IPR037241   E2F-DP_heterodim
IPR014889   Transc_factor_DP_C
IPR028314   DP-2
IPR015648   Transcrpt_fac_DP

SUPFAM

SSF46785 SSF46785 + More
SSF144074 SSF144074

Gene 3D

1.10.10.10 1.20.140.80

CDD

cd14458 DP_DD

ProteinModelPortal

H9J9N9 A0A2A4JS83 A0A2W1BUR4 A0A2H1WCX9 A0A194RD00 A0A2A4JT76 + More
A0A194PM70 A0A088ATI5 A0A0M9ADG8 A0A0C9QT03 A0A0C9R506 A0A2J7RPL0 A0A2A3EGR2 A0A1B6GVK8 A0A1B6J515 A0A1B6E6M2

PDB

5TUV E-value=1.34923e-35, Score=375

KEGG

101737999 K09394 transcription factor Dp, invertebrate | (RefSeq) transcription factor Dp-1

GO

GO:0008134 GO:0000278 GO:0005667 GO:0003700 GO:0003677 GO:0003712 GO:0051726 GO:0005634 GO:0006355 GO:0006480 GO:0008168 GO:0005737 GO:0016876 GO:0043039 GO:0004651

PANTHER

PTHR12548:SF5 PTHR12548

Subcellular location

Nucleus

Length:

428

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00435

Exp number, first 60 AAs:

0.00096

Total prob of N-in:

0.02171

outside

1 - 428

Pi

206.235747

Theta

198.5198

Tajima's D

0.667255

CLR

0.523087

CSRT

0.557422128893555

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics