SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01953  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006228
Annotation
programmed_cell_death_protein_10_[Papilio_xuthus]
Location in the cell
PlasmaMembrane   Reliability : 4.466
 

Sequence

CDS
ATGACAATGGGCGATGAATTGCCTGTGACTTCTTTGGTATTACCAGTTTTAATTCGCCCTGTCCTAACGCAGCTGGAGAAATATGATCTGGCTGCCTCTCAGACATTACGAGCAGCTCTCACCAAAGCAGAGGCTGCAGTACCTGGTCTTAATTATGATTTGGTGGCAGGAATCATGAGGAGAGCAGATATTCCTGTTAATATGAATGAGAGCTTATTAAGATTACAAGGGAGTCTCACAGATTCAGAATGTACTGATTTAAGGCTGAACAGGACTGAAGAGGCATTTCAGGAGCTTAATAAGAAATCTGCTGCTTTGAAAAAGATACTGAGTCGCATTCCAGATGAGATAACTGATCGGAAGACTTTTCTTGAGACTATCAAGGAAATAGCCTCTGCCATAAAAAAATTACTGGATGCTGTAAATGAGGTATCTACATATACTCCAGGTCCTGGGAAGCAAGTATTAGAACAGAGGAAAAGAGAATTTGTAAAATATTCAAAGCGATTTTCTACTACACTCAAAGAATACTTTAAAGAAGGACAAGCAAATGCTGTTTTTGTGAGCGCTCTTTATTTGATTCATCAAACAAATCAGATACTGTATACAGTAAAGAGCAAGACTGAGTAA
Protein
MTMGDELPVTSLVLPVLIRPVLTQLEKYDLAASQTLRAALTKAEAAVPGLNYDLVAGIMRRADIPVNMNESLLRLQGSLTDSECTDLRLNRTEEAFQELNKKSAALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTLKEYFKEGQANAVFVSALYLIHQTNQILYTVKSKTE

Summary

EMBL
KZ149895    PZC78794.1    AK403142    KQ459601    BAM19584.1    KPI93838.1    + More
NWSH01000172    PCG78780.1    AGBW02012530    OWR44896.1    GAIX01013412    JAA79148.1    KQ460398    KPJ15153.1    GEZM01056913    GEZM01056912    JAV72562.1    GEDC01002564    JAS34734.1    KK852829    KDR15369.1    NEVH01001358    PNF42803.1    AJWK01008247    CH477389    EAT41997.1    GFDF01007526    JAV06558.1    GFTR01003537    JAW12889.1    GDKW01000994    JAI55601.1    GECL01002150    JAP03974.1    GBBI01000525    JAC18187.1    ACPB03007951    GAHY01000794    JAA76716.1    GAPW01004332    JAC09266.1    GGFM01003121    MBW23872.1    GGFK01009783    MBW43104.1    GGFJ01009348    MBW58489.1    ADMH02002138    ETN58348.1    AXCM01009415    ATLV01018240    ATLV01018241    ATLV01018242    KE525226    KFB42855.1    AAAB01008964    EDO63570.1    APCN01000798    GECU01001673    JAT06034.1    GEBQ01008771    JAT31206.1    GECZ01008839    JAS60930.1    GALX01001845    JAB66621.1    GDAI01001531    JAI16072.1    GFDL01002468    JAV32577.1    DS235874    EEB19682.1    GBHO01020648    GBHO01020647    GDHC01013713    GDHC01012026    JAG22956.1    JAG22957.1    JAQ04916.1    JAQ06603.1    GANO01002646    JAB57225.1    ABLF02025309    GFXV01001954    MBW13759.1    AK417876    BAN21091.1    GGMS01006481    MBY75684.1    AXCN02000789    UFQT01000281    SSX22744.1    KQ977754    KYN00098.1    ADTU01014813    GL435242    EFN73667.1    KQ979568    KYN20861.1    KQ981864    KYN34274.1    GL762653    EFZ20970.1    QOIP01000006    RLU22195.1    KQ976662    KYM78527.1    GL888818    EGI57875.1    GL449382    EFN82915.1    KQ982314    KYQ57931.1    KQ414632    KOC67195.1    GBYB01007719    JAG77486.1    GDRN01038947    JAI67216.1    KZ288405    PBC26160.1    KQ434936    KZC11913.1    BT128117    KB632003    AEE63078.1    ERL87889.1    CVRI01000037    CRK93393.1    CH940650    EDW67821.1    CH933806    EDW14629.1    CH916369    EDV93007.1    CP012526    ALC46015.1    GBXI01016871    JAC97420.1    KQ435922    KOX68550.1    OUUW01000005    SPP81009.1    CH479179    EDW25042.1    CM000070    CH476005    EAL27522.1    EDY71272.1    GGFM01007268    MBW28019.1    GDHF01023903    JAI28411.1    GBYB01000597    JAG70364.1    GAKP01002124    GAKP01002123    JAC56828.1    GAMC01013485    JAB93070.1    CH964232    EDW80682.1    CCAG010020735    EZ422837    ADD19113.1    NNAY01004651    OXU17603.1    CM000160    EDW97451.2    AE014297    BT010269    AAF55190.2    AAQ23587.1    JXJN01020014   
Interpro
IPR009652   PDCD10       
PDB
4TVQ     E-value=3.70815e-42,     Score=428

Ontologies

Topology

Length:
209
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.13809
Exp number, first 60 AAs:
0.02915
Total prob of N-in:
0.04266
outside
1  -  209
 
 

Population Genetic Test Statistics

Pi
258.930523
Theta
216.680276
Tajima's D
1.470942
CLR
0.666247
CSRT
0.776611169441528
Interpretation
Uncertain
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