Silkworm Genome Informatics Database

Gene

KWMTBOMO01949

Pre Gene Modal

BGIBMGA010114

Annotation

PREDICTED:_uncharacterized_protein_LOC105842017_[Bombyx_mori]

Location

Bomo_Chr4(-):8442515-8446457 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.81

CDS

ATGGAAATCACAAAGCGCATCCGCACCCTTTGTCAGCGAGCGCCGCCGGCACACCTGCAACGGTCGACGGCAGGCGGCTTGGATCACAGAGGGCGTCGGCACCCTTTGATGGCTCGGGTCACCGGCATATTTGCAACGATCAACGGCAGGCGGCTTGAATCAGAGAGCGCACCGGCACCCTTTGACGGCTCCGGTCACCGGTTCCCCTGCAACGTTCGTGGCGGTCGGCTTGGAACACACACCGCAGCGGCACCCTTTGATGGTGCGGGTCGCCGGCACACTTCAACGTTCGCGGCGGGCGGCTTGGATCACATACCGCAGCGGCACCCTTTGATGGCGCGAGTTGCCGGCACACTGGCTGACTATAAAAAGAGCTGCTACGCATTTAAAACCACGATGAACGATATGATGACTCAACTGTCTTACGATCATCGCGTAACCTTGACTGAAATGATCGGCACCATGAAATCAGAAGAAAATACGCGAGTGCGCATTGCCGATGTTTATTTTCCTACATATGACCCCGATTCTAGTACCGATGTACACGATTGGGTAGATCTTATTACACGTACTCAAGCAGAATATGGACTTCGAGATCATGAGGTACGATTAAAAGCAGCAAGTGTATTAAAAGGTCGTGCAAAGACATGGGCAGATAGTAGCCTCCTAAGGACAACAACCTGGACGGAAATGCGGGATGACATGTTGCAAACTTTCGAACCCGAATCCAGGTACTTTGCAGATATTCTGAGTTATAGAAATTACACCATTGACGAGGCAGAAAACATTCAAGATTTTATTTCAAACGTGTGGCGTATGTTCAGAAGGATAGTAAAACCTCATCCAACGGAACAGGATGCAGTAGAATTTGTCATTGGGAGCATTGGAGATGAACGGATTCGGACAGAACTGCTCAATAGCAAGTCAAATACTGTTCCGGAGTTAATTGCTATAGCCAAAACGTTTCGCAAACGAAAGAATATACCAACTAAACCGACTGAGTTCAGTAAGCAACCTCGTTTGAACTTTAATCGTGATAGATCCAACTTGACTTGTCATGTTTGTGGAAAAACAGGTCATTTTGCTGGATATTGCCCGGAAAATGCAATTCGACGTGGAACGTTTTCAGCATCAGGATCAGGAGCTTCTTTCTCATCAAGAGATTCGCCTGTACCATCCATTAAGGAGTGTTCCTACTGTAAAGGGACTCGACACACTACAGAAAGATGTTTTAAAAGAATTGCTGACGAACAACACAGAACGAAATGGATATGGACTGCCTCTCACGAAGCAACAAGATTAAACATAATCGATTACCGTACCTGCGCGCTGCTTCATACTATGTTCAAAGAGGGCGTACCAATTGAACTTCATACAGATGCAAGTGATGCTGATCCAACTATCACTCATATGAATTGGAGACTGTGGCTGTTAGACGAAGTTTTGTGCCAAAAAGTTAAGCTGGAGAATGGAAGAACCAAGACTCTAAAAGCGGTACCACAATGCTACCAATGGAGTATCATAAATAATTACCACAAAGTTTTAAAACACTTTGGCTGGGAGAAAGCACTCGAAAAACTCAAAGAACACTTTTGGTCTGACAAATTGAGCTCAAAAGTTCGCAGCTTCATAGACAATTGCGTGTACAGCATTGAACTGCACCACATCGTAGCATACACGAATAGATCAAACGGCCAGGCCAAAAGAATTTTCCGCATCGTTAAAGATGGACTCACTGTCATTAGTAATATTCAGCAGGATCACTGGAAACACAACTTGCTATTAACTGTACAGTACCTATCCAAAGCAACTGGGAAAGCACCTATGGAATGGAGCTAA

Protein

MEITKRIRTLCQRAPPAHLQRSTAGGLDHRGRRHPLMARVTGIFATINGRRLESESAPAPFDGSGHRFPCNVRGGRLGTHTAAAPFDGAGRRHTSTFAAGGLDHIPQRHPLMARVAGTLADYKKSCYAFKTTMNDMMTQLSYDHRVTLTEMIGTMKSEENTRVRIADVYFPTYDPDSSTDVHDWVDLITRTQAEYGLRDHEVRLKAASVLKGRAKTWADSSLLRTTTWTEMRDDMLQTFEPESRYFADILSYRNYTIDEAENIQDFISNVWRMFRRIVKPHPTEQDAVEFVIGSIGDERIRTELLNSKSNTVPELIAIAKTFRKRKNIPTKPTEFSKQPRLNFNRDRSNLTCHVCGKTGHFAGYCPENAIRRGTFSASGSGASFSSRDSPVPSIKECSYCKGTRHTTERCFKRIADEQHRTKWIWTASHEATRLNIIDYRTCALLHTMFKEGVPIELHTDASDADPTITHMNWRLWLLDEVLCQKVKLENGRTKTLKAVPQCYQWSIINNYHKVLKHFGWEKALEKLKEHFWSDKLSSKVRSFIDNCVYSIELHHIVAYTNRSNGQAKRIFRIVKDGLTVISNIQQDHWKHNLLLTVQYLSKATGKAPMEWS

Uniprot

A0A0L7LE80 A0A0J7KK45

Pubmed

26227816

EMBL

JTDY01001444 KOB73848.1 LBMM01006475 KMQ90589.1

Proteomes

UP000037510 UP000036403

Pfam

PF17921 Integrase_H2C2 + More
PF00098 zf-CCHC

Interpro

IPR036397   RNaseH_sf        + More
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR012337   RNaseH-like_sf
IPR036875   Znf_CCHC_sf
IPR001995   Peptidase_A2_cat
IPR001584   Integrase_cat-core
IPR001969   Aspartic_peptidase_AS
IPR001878   Znf_CCHC

SUPFAM

SSF50630   SSF50630        + More
SSF57756   SSF57756
SSF53098   SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

A0A0L7LE80 A0A0J7KK45

KEGG

105842017 no KO assigned | (RefSeq) uncharacterized LOC105842017

GO

GO:0015074 GO:0004190 GO:0008270 GO:0003676 GO:0005524 GO:0006480 GO:0008168 GO:0005737 GO:0016876 GO:0043039 GO:0004651 GO:0005634

Length:

612

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00219

Exp number, first 60 AAs:

0.00157

Total prob of N-in:

0.00215

outside

1 - 612

Pi

286.022348

Theta

188.786366

Tajima's D

1.853288

CLR

0.060724

CSRT

0.855007249637518

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree