Silkworm Genome Informatics Database

Gene

KWMTBOMO01942

Pre Gene Modal

BGIBMGA006113

Annotation

PREDICTED:_uncharacterized_protein_LOC105842570_[Bombyx_mori]

Location

Bomo_Chr4(+):8341248-8348982 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.695

CDS

ATGCCTGAAGGCAAAGTAAAAGACTTAATTAAAAGGAGGGCCTCAATAAAGGCCAAAATAACACAATTCTCTACGTATTTGGATGTCCTACGGGGTTGTGATTATCTCAATGATGTGCAATTCTCGGAACTCCAAGTACGTCTTGAGAAATTCGAAACCTTATACGGGGACTTCGACACTTTTCAGAGTGAGATCGAGATGCTGTCAGACGCGCCGGAAGACCATTATAAGGATCGTGAGTCCATTGAGTCGCAGTACTACAAGCTTGTGGCTTCTGCGCGTACGCTGTTGGATCAACGCAAAAATAATGACGGTAGGTCCGAGAGATTCCAGCGTATCGAGTACCTTAAGCAGCATTTTTGGCAGCGATTCTCCAATGAGTACGTCGTGTGGCTACAACAAAAAATTAAATGGCCGACTCAAAAGGGAGACTTAAAAGAAGGTATGATGGTTGTCATCAAGGAGAAGGGACTACCACCTCTTATGTGGCTGCTCGGACGCATTATTCGCCTTTGTCCTGGACGAGATGGAATTACACGTGTGGCAGATATCTTAACCAAGAAAGGTGTTATACGACGCGCTTACAACAACATATGCCCGCTACCAGTCAATATTTGA

Protein

MPEGKVKDLIKRRASIKAKITQFSTYLDVLRGCDYLNDVQFSELQVRLEKFETLYGDFDTFQSEIEMLSDAPEDHYKDRESIESQYYKLVASARTLLDQRKNNDGRSERFQRIEYLKQHFWQRFSNEYVVWLQQKIKWPTQKGDLKEGMMVVIKEKGLPPLMWLLGRIIRLCPGRDGITRVADILTKKGVIRRAYNNICPLPVNI

Uniprot

S4PX92 S4PWG7 A0A0T6AWJ6 A0A0N1I7D0 A0A2A4IUL3 A0A2A4IUY1 + More
A0A151K1P4 A0A0A9WEH4 A0A0N0PBK0 A0A0J7K7S0 A0A0A9Z2M8 A0A2S2P4P6 A0A151IPF9 A0A151IL53 A0A0J7JX24 A0A151JA43

Pubmed

23622113 26354079 25401762

EMBL

GAIX01005443 JAA87117.1 GAIX01006818 JAA85742.1 LJIG01022633 KRT79529.1 + More
KQ460976 KPJ10052.1 NWSH01006923 PCG63186.1 PCG63188.1 LKEX01009158 KYN50050.1 GBHO01037808 JAG05796.1 KQ460970 KPJ10166.1 LBMM01012392 KMQ86241.1 GBHO01005508 GBHO01005504 JAG38096.1 JAG38100.1 GGMR01011257 MBY23876.1 KQ976863 KYN07859.1 KQ977143 KYN05318.1 LBMM01024091 KMQ82619.1 KQ979340 KYN21881.1

Proteomes

UP000053240 UP000218220 UP000078542 UP000036403 UP000078492

Pfam

PF18701   DUF5641        + More
PF00665   rve
PF17921   Integrase_H2C2
PF05585   DUF1758
PF03564   DUF1759
PF05380   Peptidase_A17

Interpro

IPR040676   DUF5641        + More
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR001606   ARID_dom
IPR005312   DUF1759
IPR041588   Integrase_H2C2
IPR008737   Peptidase_asp_put
IPR008042   Retrotrans_Pao

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

S4PX92 S4PWG7 A0A0T6AWJ6 A0A0N1I7D0 A0A2A4IUL3 A0A2A4IUY1 + More
A0A151K1P4 A0A0A9WEH4 A0A0N0PBK0 A0A0J7K7S0 A0A0A9Z2M8 A0A2S2P4P6 A0A151IPF9 A0A151IL53 A0A0J7JX24 A0A151JA43

KEGG

105842570 no KO assigned | (RefSeq) uncharacterized LOC105842570

GO

GO:0003676 GO:0015074 GO:0003677 GO:0016301

Length:

205

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00232

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.04688

outside

1 - 205

Pi

317.559675

Theta

186.349197

Tajima's D

2.165634

CLR

0.584712

CSRT

0.905254737263137

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree