Gene

KWMTBOMO01939  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006222

Annotation

PREDICTED:_WD_repeat-containing_protein_55_homolog_[Amyelois_transitella]

Location

Bomo_Chr4(+):8307808-8313932      View in EpiBrowser

Full name

WD repeat-containing protein 55 homolog      

Location in the cell

Extracellular   Reliability : 1.63 Nuclear   Reliability : 3.444

CDS

ATGACCTACGACTTCAAGGAATTTGAAAAAAATTCTTCTGATGATGAAAGTATCTCTAGTGATGGCACAGAAGAGGATTTTAACATGTCTGATGATGGGGATGATGACAGCCCTATTGAAGAATCTGTAGTTGAAGACGACATTGAGGAAGAAGATGAAGTGGTAAAAGCAATTAAAGCTGAAAAAAAAAGAGAAAGAGATCACCCTCCATCTATTACATGTGATGAATTCATTGTTGATATATCATTGAGTCCCGCTAAGAATATAATTGCTGTAGCTGATATTGTTGGTGATATTCATCTATATGAATTCAATACAGAAGAAACAAAACTTGTCAACACACTAGAGGTACATCTGAAAGCTTGTAGAGATATTGAATTCAACAGTGATGGGAATATAATTTTCTCTACAGCCAAGGACAAATCTATAATGGCTACAGATGTTGAAACGGGAAAGCTAAAACGGTGTTATGAGAATGCACACCAGGATCCAGTTTATCGTTTACTTTGTTTAGAAAATAACAAAATTGTAACAGGAGATGATTGTGGTACAGTAAAATTATGGGATGTACGTAAACCGGATCCTGTATTTTCAATAAAAATTGGCGAAGAGTATATTTCTGATATGATAACAAATGACGCACAAAAATATTTAGTATGCTCGGATGGAAGTGGTATTTTAACATCTATTGATCTCAAAGCTAGCAAAATTTATACAACATCAGAAGAATATGACTGCGAACTTACTTGCATGGGATTGTTTCGTTCAGACACAAAGTTGCTAGTTGGATCATCTACAGGAAAATTTTATTTATTCAACTGGAAGGAGTTTGGCCTTCACAGTGATGAATATCTCGGTCAAAAACATGCGATCAGTTGTATGGTACCTGTTACGCAGAACATAGTTGTCACTTCCGGAGAGGACGGCGTTCTAAGGGCAGCGCATATGTTTCCACAACGACAACTCGGTATCGTTGGTCAGCATCGCCTACCTGTCGAACATCTTGATATAAGCCATGATGGGCGCTACATTGCTTCTTGTTCACATGACAATGATGTTAAGTTTTGGAATATATCCTATTTTGAATCAATTGACAATATTATTGATGAAAAGCATAACAAAAAACGGGATATGGTCAATAATTTGCCTTCAAGTAGTTTTAAAAATGCGTCAGATTTTTTTTCGGGTTTAGCATAA

Protein

MTYDFKEFEKNSSDDESISSDGTEEDFNMSDDGDDDSPIEESVVEDDIEEEDEVVKAIKAEKKRERDHPPSITCDEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYENAHQDPVYRLLCLENNKIVTGDDCGTVKLWDVRKPDPVFSIKIGEEYISDMITNDAQKYLVCSDGSGILTSIDLKASKIYTTSEEYDCELTCMGLFRSDTKLLVGSSTGKFYLFNWKEFGLHSDEYLGQKHAISCMVPVTQNIVVTSGEDGVLRAAHMFPQRQLGIVGQHRLPVEHLDISHDGRYIASCSHDNDVKFWNISYFESIDNIIDEKHNKKRDMVNNLPSSSFKNASDFFSGLA

Similarity

Belongs to the WD repeat WDR55 family.

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat  

Feature

chain  WD repeat-containing protein 55 homolog

Uniprot

H9J9M9   A0A2H1WRE1   A0A2A4K3F4   A0A2W1BUS4   A0A1E1WTY5   A0A194PKI7   + More
A0A194RCG2   A0A212ETS9   S4PPH7   A0A2J7R5M4   A0A067R4G5   D6WJ27   J3JUW6   A0A0L7R5L6   A0A0J7KB74   E2AEJ7   A0A310SVV9   A0A026VVI1   E9IJB1   A0A336KI46   A0A2A3EP26   A0A087ZRR3   U4UAG4   N6UN17   Q0IF90   A0A0L0CS07   E2BT39   A0A1W4XVX4   A0A1S4FDJ2   A0A195EMS2   A0A195BWN2   T1PCC7   A0A1I8MNJ5   A0A1B0G6V9   A0A023EST0   A0A1B0AAC2   A0A1A9UN99   A0A195FLT6   A0A1B0G6W0   A0A151XIZ2   F4WRU3   E0VGC9   A0A158NEL7   A0A232EYX8   A0A195BXS0   A0A1B0AKJ1   A0A1A9YK87   A0A182H5W2   A0A1Q3FWR8   A0A3B0KIT0   A0A1Q3FWA7   B4N984   A0A1A9W8C1   A0A1W4W1K9   A0A1I8PVA1   A0A1Y1LG13   B4GMG4   Q294Y7   B3P4F8   B4PU14   W8AWU0   U5EX47   A0A034WH98   B4JSW8   B4KE10   A0A1B0CDU5   Q8T088   A0A0K8WLR3   A0A1J1HEZ7   A0A0A1XLJ5   K7IU00   B4QTL6   B4M4W4   A0A1B6E1Q1   A0A0M4ENA1   A0A2M4BLV7   B3M1G0   A0A1L8DNA2   A0A1L8DND1   A0A2M4BLH6   A0A182W6P2   A0A2M4BLM2   A0A2M4A7P1   A0A2P8XK20   A0A0L7LM93   A0A1Y9HDW9   A0A2M4A5L2   A0A2M4A5I9   A0A2M4A8H1   A0A182QCD8   A0A2M4ADB9   A0A182MZ01   W5J6B7   A0A084VY13   T1DRE3   A0A2M3Z064   A0A182IJ67   A0A182PCQ3   A0A2M4CHM0   A0A182MU11  

Pubmed

19121390    28756777    26354079    22118469    23622113    24845553    + More
18362917    19820115    22516182    20798317    24508170    21282665    23537049    17510324    26108605    25315136    24945155    21719571    20566863    21347285    28648823    26483478    17994087    28004739    15632085    24495485    25348373    10731132    12537572    12537569    25830018    20075255    29403074    26227816    20920257    23761445    24438588   

EMBL

BABH01005075    ODYU01010437    SOQ55546.1    NWSH01000172    PCG78785.1    KZ149895    + More
PZC78798.1    GDQN01004136    GDQN01000569    JAT86918.1    JAT90485.1    KQ459601    KPI93842.1    KQ460398    KPJ15159.1    AGBW02012530    OWR44900.1    GAIX01000242    JAA92318.1    NEVH01006991    PNF36134.1    KK852702    KDR18109.1    KQ971342    EFA03701.1    BT127031    AEE61993.1    KQ414648    KOC66177.1    LBMM01010349    KMQ87524.1    GL438862    EFN68154.1    KQ759874    OAD62356.1    KK108171    EZA46839.1    GL763764    EFZ19337.1    UFQS01000177    UFQT01000177    SSX00800.1    SSX21180.1    KZ288202    PBC33515.1    KB631982    ERL87596.1    APGK01025700    KB740600    ENN80112.1    CH477389    JRES01000091    KNC34209.1    GL450325    EFN81169.1    KQ978625    KYN29580.1    KQ976401    KYM92371.1    KA646344    AFP60973.1    CCAG010013874    GAPW01001248    JAC12350.1    KQ981490    KYN41212.1    KQ982080    KYQ60307.1    GL888292    EGI63100.1    DS235137    EEB12435.1    ADTU01013497    NNAY01001568    OXU23571.1    KQ978501    KYM93454.1    JXJN01019082    JXJN01025871    JXUM01112743    KQ565620    KXJ70837.1    GFDL01003153    JAV31892.1    OUUW01000014    SPP88430.1    GFDL01003166    JAV31879.1    CH964232    GEZM01056912    JAV72564.1    CH479185    CM000070    CH954181    CM000160    GAMC01017297    GAMC01017294    JAB89258.1    GANO01000240    JAB59631.1    GAKP01004888    JAC54064.1    CH916373    CH933806    AJWK01008247    AE014297    AY069480    GDHF01020697    GDHF01000320    JAI31617.1    JAI51994.1    CVRI01000001    CRK86552.1    GBXI01002441    JAD11851.1    CM000364    CH940652    GEDC01005481    JAS31817.1    CP012526    ALC47065.1    GGFJ01004790    MBW53931.1    CH902617    GFDF01006152    JAV07932.1    GFDF01006163    JAV07921.1    GGFJ01004789    MBW53930.1    GGFJ01004791    MBW53932.1    GGFK01003429    MBW36750.1    PYGN01001883    PSN32343.1    JTDY01000569    KOB76648.1    GGFK01002762    MBW36083.1    GGFK01002755    MBW36076.1    GGFK01003782    MBW37103.1    AXCN02000789    GGFK01005460    MBW38781.1    ADMH02002138    ETN58349.1    ATLV01018243    KE525226    KFB42857.1    GAMD01000665    JAB00926.1    GGFM01001130    MBW21881.1    GGFL01000625    MBW64803.1    AXCM01009415   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000235965    + More
UP000027135    UP000007266    UP000053825    UP000036403    UP000000311    UP000053097    UP000242457    UP000005203    UP000030742    UP000019118    UP000008820    UP000037069    UP000008237    UP000192223    UP000078492    UP000078540    UP000095301    UP000092444    UP000092445    UP000078200    UP000078541    UP000075809    UP000007755    UP000009046    UP000005205    UP000215335    UP000078542    UP000092460    UP000092443    UP000069940    UP000249989    UP000268350    UP000007798    UP000091820    UP000192221    UP000095300    UP000008744    UP000001819    UP000008711    UP000002282    UP000001070    UP000009192    UP000092461    UP000000803    UP000183832    UP000002358    UP000000304    UP000008792    UP000092553    UP000007801    UP000075920    UP000245037    UP000037510    UP000075900    UP000075886    UP000075884    UP000000673    UP000030765    UP000075880    UP000075885    UP000075883   

PRIDE

H9J9M9    B4N984    B4GMG4    Q294Y7    B4KE10    Q8T088    + More
B4M4W4    B3M1G0   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF15359   CDV3

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR036322   WD40_repeat_dom_sf       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR017986   WD40_repeat_dom       
IPR024977   Apc4_WD40_dom       
IPR026806   CDV3       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J9M9   A0A2H1WRE1   A0A2A4K3F4   A0A2W1BUS4   A0A1E1WTY5   A0A194PKI7   + More
A0A194RCG2   A0A212ETS9   S4PPH7   A0A2J7R5M4   A0A067R4G5   D6WJ27   J3JUW6   A0A0L7R5L6   A0A0J7KB74   E2AEJ7   A0A310SVV9   A0A026VVI1   E9IJB1   A0A336KI46   A0A2A3EP26   A0A087ZRR3   U4UAG4   N6UN17   Q0IF90   A0A0L0CS07   E2BT39   A0A1W4XVX4   A0A1S4FDJ2   A0A195EMS2   A0A195BWN2   T1PCC7   A0A1I8MNJ5   A0A1B0G6V9   A0A023EST0   A0A1B0AAC2   A0A1A9UN99   A0A195FLT6   A0A1B0G6W0   A0A151XIZ2   F4WRU3   E0VGC9   A0A158NEL7   A0A232EYX8   A0A195BXS0   A0A1B0AKJ1   A0A1A9YK87   A0A182H5W2   A0A1Q3FWR8   A0A3B0KIT0   A0A1Q3FWA7   B4N984   A0A1A9W8C1   A0A1W4W1K9   A0A1I8PVA1   A0A1Y1LG13   B4GMG4   Q294Y7   B3P4F8   B4PU14   W8AWU0   U5EX47   A0A034WH98   B4JSW8   B4KE10   A0A1B0CDU5   Q8T088   A0A0K8WLR3   A0A1J1HEZ7   A0A0A1XLJ5   K7IU00   B4QTL6   B4M4W4   A0A1B6E1Q1   A0A0M4ENA1   A0A2M4BLV7   B3M1G0   A0A1L8DNA2   A0A1L8DND1   A0A2M4BLH6   A0A182W6P2   A0A2M4BLM2   A0A2M4A7P1   A0A2P8XK20   A0A0L7LM93   A0A1Y9HDW9   A0A2M4A5L2   A0A2M4A5I9   A0A2M4A8H1   A0A182QCD8   A0A2M4ADB9   A0A182MZ01   W5J6B7   A0A084VY13   T1DRE3   A0A2M3Z064   A0A182IJ67   A0A182PCQ3   A0A2M4CHM0   A0A182MU11  

PDB

6G6N     E-value=1.25467e-08,     Score=142

KEGG

101742797    no KO assigned | (RefSeq) WD repeat-containing protein 55 homolog

GO

GO:0050829   GO:0016021   GO:0005515   GO:0007264   GO:0005524   GO:0006419   GO:0000166   GO:0005737   GO:0016876   GO:0043039   GO:0004651   GO:0005634  

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000480000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00976

outside

1  -  398

 

 

Pi

199.499915

Theta

183.572654

Tajima's D

0.814691

CLR

0.209099

CSRT

0.601569921503925

Interpretation

Uncertain