Gene

KWMTBOMO01938  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005930

Annotation

WD40_protein_[Bombyx_mori]

Location

Bomo_Chr4(-):8303095-8304247      View in EpiBrowser

Full name

WD repeat-containing protein 82      

Location in the cell

Cytoplasmic   Reliability : 1.356 Extracellular   Reliability : 1.381

CDS

ATGATGAAACTCGTTGATCAAGTTGTCCGAAGCTTTAAAGTTGCCAAAGTATTCCGTGAAAATACAGACAAAATTAACAGTATAGATTTTTCTCCTAATGGGGAGACATTGATTTCATGTAGCGAAGATGATCAAATCGTTATATACGATTGTGAAAAAGGAACACAAATGATTACGGTCAACAGTAAAAAATACGGGGTCGATTTGATACATTTTACACATGCCAAAAACACTGCAATTCACAGTTCCACCAAAGTAGACGACACAATACGGTATTTATCCCTTCACGATAACAAGTACATTAGATATTTCCCAGGGCATACAAAAAAAGTTGTGACAATGTGTTTATCCCCGGTTGAAGACACATTTTTATCTGGATCATTAGACAAAACATTACGACTGTGGGATCTTCGGTCGCCTAATTGTCAGGGACTAATGCATTTATCTGGAAGACCTGTTGCAGCTTATGACCCTGAAGGTCTCATATTTGCAGCTGGCGTTAATTCCGAGAGCATCAAGCTTTATGATTTGAGGTCTTTTGACAAGGGCCCCTTTGTCACATTTAAATTAAACCAAGAAAAGGAATGTGATTGGACAGGTTTGAAATTTTCCCGTGATGGCAAAACTATGTTAATAAGTACCAATGGGTCAATAATTCGTTTGGTGGATGCATATCATGGAACTCCACTTCAAACCTTCACTGGACACTTAAACAACAAAGGGATACCTATAGAAGCATCTTTTAGTCCTGATTCCCAGTACATCTTCAGTGGTTCAACAGATGGTCGTGTTCATGTCTGGAATGCTGATACTGGTTACAAAGTATGTGTCTTGAATGGTGATCATCCAGCACCTATACAATGCGTACAGTTCAATCCTAAGTTCATGATGCTGGCATCAGCATGTACAAATATGGCATTCTGGTTACCCACAATTGATGATGTTTAA

Protein

MMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPVAAYDPEGLIFAAGVNSESIKLYDLRSFDKGPFVTFKLNQEKECDWTGLKFSRDGKTMLISTNGSIIRLVDAYHGTPLQTFTGHLNNKGIPIEASFSPDSQYIFSGSTDGRVHVWNADTGYKVCVLNGDHPAPIQCVQFNPKFMMLASACTNMAFWLPTIDDV

Description

Component of the SET1 complex that specifically di- and trimethylates 'Lys-4' of histone H3.

Subunit

Component of the SET1 complex, composed at least of the catalytic subunit Set1, wds/WDR5, Wdr82, Rbbp5, ash2, Cfp1/CXXC1, hcf and Dpy-30L1.

Similarity

Belongs to the WD repeat SWD2 family.

Keywords

Complete proteome   Nucleus   Reference proteome   Repeat   WD repeat  

Feature

chain  WD repeat-containing protein 82

Uniprot

Q2F5U4   A0A194PRT6   A0A1E1WD01   A0A194RBG0   S4PX75   A0A2W1C117   + More
A0A2A4K4G9   A0A212ETU3   A0A0L7KZL5   A0A2H1WMB6   D6WJA9   A0A1Y1LWD2   A0A1W4XT96   A0A2P8XTY1   A0A067QNE1   A0A347ZJ79   A0A2J7QBR9   J3JV95   A0A182IJ89   A0A1Q3FW28   A0A1B6KM29   E0VJS5   B0WGD4   A0A0C9R1A4   A0A0L0CHI2   K7J0L0   A0A182GHV4   A0A151ITG1   A0A151IGB4   F4WWX3   A0A195FA29   A0A158NCD5   E9J837   A0A182NZH8   A0A232F210   A0A2M4AWB8   W5J9Z7   A0A182FWG4   A0A1B0G2A6   A0A1A9V2B5   A0A182K4U2   A0A1I8NU51   A0A1B0A4T9   Q17LX9   Q7Q1N9   A0A182XFT1   A0A182MJB0   A0A182RHD9   A0A1A9XVT7   A0A182NBM7   A0A1B0ANY4   A0A182VEA6   A0A182Y0K2   A0A182LMA5   A0A182UFR7   A0A182WGF2   A0A182HI66   A0A1A9W5B5   A0A336K609   A0A1I8MMB3   A0A0J7L153   E2A1R9   A0A084WU97   A0A0T6AUZ4   A0A154PNZ5   B4HYJ8   B4Q6R9   Q9VLN1   A0A0L7RG70   A0A2A3E6Z6   V9IG95   A0A0M8ZV44   A0A087ZV96   B4N148   A0A3L8DGV3   A0A1W4VX02   B4LS99   B4NWX4   B3MNS6   B4JAK6   B3N753   A0A0M4ES74   B4KE80   A0A3B0KQP3   W8B404   Q29NY8   A0A1L8DGP0   A0A0K8UFK0   A0A034WT30   A0A1B0GHB8   N6UF79   E2C361   A0A0N7Z971   A0A069DRW3   R4FNY2   A0A023F9H5   A0A2R7WHC4   A0A0K8TBQ8   A0A182QZK1   A0A0A9YIS8  

Pubmed

19121390    26354079    23622113    28756777    22118469    26227816    + More
18362917    19820115    28004739    29403074    24845553    22516182    20566863    26108605    20075255    26483478    21719571    21347285    21282665    28648823    20920257    23761445    17510324    12364791    25244985    20966253    25315136    20798317    24438588    17994087    22936249    10731132    12537572    21694722    21875999    30249741    17550304    24495485    15632085    25348373    23537049    27129103    26334808    25474469    25401762   

EMBL

BABH01005074    DQ311329    ABD36273.1    KQ459601    KPI93850.1    GDQN01006190    + More
JAT84864.1    KQ460398    KPJ15168.1    GAIX01005528    JAA87032.1    KZ149895    PZC78810.1    NWSH01000193    PCG78550.1    AGBW02012530    OWR44908.1    JTDY01004153    KOB68521.1    ODYU01009640    SOQ54210.1    KQ971343    EFA04451.2    GEZM01045254    JAV77842.1    PYGN01001356    PSN35456.1    KK853129    KDR10979.1    FX985647    BBA84385.1    NEVH01016296    PNF26018.1    BT127162    AEE62124.1    GFDL01003258    JAV31787.1    GEBQ01027491    GEBQ01012509    JAT12486.1    JAT27468.1    DS235226    EEB13631.1    DS231925    EDS26893.1    GBYB01000646    JAG70413.1    JRES01000397    KNC31672.1    JXUM01064961    KQ562323    KXJ76148.1    KQ981004    KYN10392.1    KQ977728    KYN00261.1    GL888417    EGI61216.1    KQ981727    KYN37067.1    ADTU01011818    GL768788    EFZ11003.1    NNAY01001198    OXU24765.1    GGFK01011763    MBW45084.1    ADMH02001728    ETN61282.1    CCAG010004344    CH477210    EAT47692.1    AAAB01008980    EAA14561.2    AXCM01003715    JXJN01001079    APCN01005628    UFQS01000115    UFQT01000115    SSW99891.1    SSX20271.1    LBMM01001317    KMQ96517.1    GL435766    EFN72742.1    ATLV01027023    KE525421    KFB53791.1    LJIG01022774    KRT78781.1    KQ435007    KZC13582.1    CH480818    EDW52128.1    CM000361    CM002910    EDX04228.1    KMY89060.1    AE014134    AY069081    AAF52654.1    AAL39226.1    KQ414598    KOC69824.1    KZ288348    PBC27485.1    JR045854    AEY60070.1    KQ435830    KOX71745.1    CH963920    EDW78138.1    QOIP01000008    RLU19551.1    CH940649    EDW63707.1    CM000157    EDW88504.1    CH902620    EDV31163.1    CH916368    EDW02792.1    CH954177    EDV59349.1    CP012523    ALC39870.1    ALC39878.1    ALC40256.1    CH933807    EDW11825.1    OUUW01000010    SPP86198.1    GAMC01010680    JAB95875.1    CH379058    EAL34505.2    GFDF01008462    JAV05622.1    GDHF01027189    JAI25125.1    GAKP01002009    GAKP01002007    JAC56943.1    AJWK01004413    APGK01029262    APGK01029263    APGK01029264    KB740731    KB632226    ENN79281.1    ERL90315.1    GL452292    EFN77593.1    GDKW01001363    JAI55232.1    GBGD01002204    JAC86685.1    ACPB03005117    GAHY01001114    JAA76396.1    GBBI01000570    JAC18142.1    KK854811    PTY18958.1    GBRD01002965    JAG62856.1    AXCN02000678    GBHO01012601    GBHO01012599    JAG31003.1    JAG31005.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007151    UP000037510    + More
UP000007266    UP000192223    UP000245037    UP000027135    UP000235965    UP000075880    UP000009046    UP000002320    UP000037069    UP000002358    UP000069940    UP000249989    UP000078492    UP000078542    UP000007755    UP000078541    UP000005205    UP000075885    UP000215335    UP000000673    UP000069272    UP000092444    UP000078200    UP000075881    UP000095300    UP000092445    UP000008820    UP000007062    UP000076407    UP000075883    UP000075900    UP000092443    UP000075884    UP000092460    UP000075903    UP000076408    UP000075882    UP000075902    UP000075920    UP000075840    UP000091820    UP000095301    UP000036403    UP000000311    UP000030765    UP000076502    UP000001292    UP000000304    UP000000803    UP000053825    UP000242457    UP000053105    UP000005203    UP000007798    UP000279307    UP000192221    UP000008792    UP000002282    UP000007801    UP000001070    UP000008711    UP000092553    UP000009192    UP000268350    UP000001819    UP000092461    UP000019118    UP000030742    UP000008237    UP000015103    UP000075886   

PRIDE

Q2F5U4    Q9VLN1   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF00152   tRNA-synt_2

Interpro

IPR020472   G-protein_beta_WD-40_rep        + More
IPR036322   WD40_repeat_dom_sf       
IPR037867   Swd2/WDR82       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR024977   Apc4_WD40_dom       
IPR004115   GAD-like_sf       
IPR004524   Asp-tRNA-ligase_1       
IPR012340   NA-bd_OB-fold       
IPR004364   aa-tRNA-synt_II       
IPR002312   Asp/Asn-tRNA-synth_IIb       
IPR006195   aa-tRNA-synth_II       

SUPFAM

SSF50978   SSF50978        + More
SSF55261   SSF55261       
SSF50249   SSF50249       

Gene 3D

2.130.10.10     3.30.1360.30    

ProteinModelPortal

Q2F5U4   A0A194PRT6   A0A1E1WD01   A0A194RBG0   S4PX75   A0A2W1C117   + More
A0A2A4K4G9   A0A212ETU3   A0A0L7KZL5   A0A2H1WMB6   D6WJA9   A0A1Y1LWD2   A0A1W4XT96   A0A2P8XTY1   A0A067QNE1   A0A347ZJ79   A0A2J7QBR9   J3JV95   A0A182IJ89   A0A1Q3FW28   A0A1B6KM29   E0VJS5   B0WGD4   A0A0C9R1A4   A0A0L0CHI2   K7J0L0   A0A182GHV4   A0A151ITG1   A0A151IGB4   F4WWX3   A0A195FA29   A0A158NCD5   E9J837   A0A182NZH8   A0A232F210   A0A2M4AWB8   W5J9Z7   A0A182FWG4   A0A1B0G2A6   A0A1A9V2B5   A0A182K4U2   A0A1I8NU51   A0A1B0A4T9   Q17LX9   Q7Q1N9   A0A182XFT1   A0A182MJB0   A0A182RHD9   A0A1A9XVT7   A0A182NBM7   A0A1B0ANY4   A0A182VEA6   A0A182Y0K2   A0A182LMA5   A0A182UFR7   A0A182WGF2   A0A182HI66   A0A1A9W5B5   A0A336K609   A0A1I8MMB3   A0A0J7L153   E2A1R9   A0A084WU97   A0A0T6AUZ4   A0A154PNZ5   B4HYJ8   B4Q6R9   Q9VLN1   A0A0L7RG70   A0A2A3E6Z6   V9IG95   A0A0M8ZV44   A0A087ZV96   B4N148   A0A3L8DGV3   A0A1W4VX02   B4LS99   B4NWX4   B3MNS6   B4JAK6   B3N753   A0A0M4ES74   B4KE80   A0A3B0KQP3   W8B404   Q29NY8   A0A1L8DGP0   A0A0K8UFK0   A0A034WT30   A0A1B0GHB8   N6UF79   E2C361   A0A0N7Z971   A0A069DRW3   R4FNY2   A0A023F9H5   A0A2R7WHC4   A0A0K8TBQ8   A0A182QZK1   A0A0A9YIS8  

PDB

4CY5     E-value=2.90411e-23,     Score=267

KEGG

692918    K14962 COMPASS component SWD2 | (RefSeq) WD40 protein

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0048188   GO:0072357   GO:0003682   GO:0080182   GO:0005737   GO:0005524   GO:0004812   GO:0006418   GO:0008168   GO:0035097   GO:0051568   GO:0005515   GO:0007264   GO:0006419   GO:0000166   GO:0016876   GO:0043039   GO:0004651   GO:0005634  

PANTHER

PTHR19861:SF0   PTHR22594:SF5  

Subcellular location

Nucleus  

Length:

315

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15542

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04718

outside

1  -  315

 

 

Pi

205.006334

Theta

199.096503

Tajima's D

0.117591

CLR

0

CSRT

0.398630068496575

Interpretation

Uncertain