SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01936  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006221
Annotation
PREDICTED:_ras-related_protein_Rab-14_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.151 Mitochondrial   Reliability : 1.228
 

Sequence

CDS
ATGACTTCAGGACCCTATAACTACTCATACATATTTAAGTATATTATAATTGGAGATATGGGAGTTGGTAAATCATGCCTCTTGCATCAATTCACTGATAAAAAATTCATGGCTGATTGTCCTCACACTATTGGTGTTGAGTTTGGAACGCGTATAATCGAAGTTGCTGGACAAAAAATCAAGCTACAGATTTGGGATACAGCTGGACAAGAAAGGTTTCGTGCTGTCACTCGATCTTACTACAGAGGTGCAGCTGGAGCTCTTATGGTTTATGACATAACAAGAAGATCCACATATAATCACCTTAGCAGCTGGCTGACAGATACTCGTAATCTGACTAATCCTAGCACTGTGATATTTTTAATTGGCAATAAATCCGATTTAGATGCCCAAAGAGATGTTACTTATGAGGAAGCTAAACAATTTGCTGATGAAAATGGCTTGATGTTTGTTGAAGCAAGTGCTAAAACAGGGCAGAATGTCGAGGAAGCATTTTTGGAGACCGCCAAAAAAATATACCAGAGCATACAAGATGGCCGGCTGGACTTGAACGCGGCGGAGTCGGGCGTCCAGCACAAGCCCGCGTCCCCGGGCCGCCCGCTCGCCGCGCCGCCCTCCTCGCGCGACAACTGCGCGTGCTAA
Protein
MTSGPYNYSYIFKYIIIGDMGVGKSCLLHQFTDKKFMADCPHTIGVEFGTRIIEVAGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLDAQRDVTYEEAKQFADENGLMFVEASAKTGQNVEEAFLETAKKIYQSIQDGRLDLNAAESGVQHKPASPGRPLAAPPSSRDNCAC

Summary

EMBL
KZ149895    PZC78812.1    ODYU01012086    SOQ58199.1    NWSH01000193    PCG78545.1    + More
KQ459601    KPI93855.1    KQ460398    KPJ15172.1    AGBW02012530    OWR44912.1    GAIX01006992    JAA85568.1    KK852846    KDR15105.1    GEZM01075860    GEZM01075858    GEZM01075857    JAV63917.1    NNAY01003108    OXU19958.1    KP216762    AJC97119.1    KQ414621    KOC67606.1    KZ288225    PBC31929.1    JR048118    AEY60582.1    KQ435759    KOX75731.1    GL887844    EGI69794.1    LBMM01002182    KMQ95172.1    ADTU01022791    KQ982409    KYQ56750.1    KK107183    QOIP01000011    EZA55860.1    RLU17110.1    KQ977649    KYN00816.1    KQ980487    KYN15893.1    GBRD01012219    JAG53605.1    KQ434787    KZC05298.1    APGK01040737    APGK01040738    KB740984    KB631904    ENN76260.1    ERL87087.1    GFDF01003785    JAV10299.1    GFDF01003806    JAV10278.1    GDKW01000960    JAI55635.1    ACPB03001109    GAHY01000691    JAA76819.1    IAAA01001821    IAAA01001822    LAA03111.1    GL765107    EFZ16912.1    GFTR01003603    JAW12823.1    AAZX01000032    AAZX01016030    LRGB01001745    KZS10691.1    KB204017    ESO82123.1    DS231890    EDS43799.1    KQ759768    OAD62949.1    KK854094    PTY11165.1    GL732911    EFX63965.1    GFDL01008110    JAV26935.1    GDIP01094815    JAM08900.1    GU289394    ADK66883.1    GAPW01004256    JAC09342.1    CH477997    EAT34504.1    GG666677    EEN44211.1    HACG01038531    CEK85396.1    EAT34505.2    JXUM01131546    GAPW01003845    KQ567724    JAC09753.1    KXJ69305.1    GFDL01008252    JAV26793.1    GEFM01005894    JAP69902.1    JH817502    EKC28779.1    AMQN01004337    KB293237    ELU16260.1    GDIQ01019938    JAN74799.1    GGLE01001486    MBY05612.1    GFWV01006348    MAA31078.1    EAAA01002795    FR905707    CDQ81111.1    NEDP02005521    OWF39565.1    JH880525    ELR60903.1    KE164180    EPQ15773.1    KL517270    KFO88424.1    KL896018    KGL83122.1    AKHW03006215    KYO23451.1    AHAT01024887    KL217813    KFO99130.1    KL448313    KFO82555.1    KL409973    KFQ93042.1    MUZQ01000043    OWK61379.1    KL414671    KFW77973.1    KK735751    KFR15638.1    AGCU01069984    AGCU01069985    KL486402    KFO09741.1    HAEC01000112    SBQ68189.1    HAEF01006930    SBR44312.1    GBSH01002177    JAG66849.1    KL245982    KFV14843.1    HAEA01013013    SBQ41493.1    KK500860    KFP11139.1   
Pfam
PF00071   Ras        + More
PF01876   RNase_P_p30
PF08547   CIA30
Interpro
IPR030702   Rab14        + More
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR016195   Pol/histidinol_Pase-like       
IPR002738   RNase_P_p30       
IPR008979   Galactose-bd-like_sf       
IPR013857   NADH-UbQ_OxRdtase-assoc_prot30       
SUPFAM
SSF52540   SSF52540        + More
SSF89550   SSF89550       
SSF49785   SSF49785       
PDB
4DRZ     E-value=1.7751e-93,     Score=871

Ontologies

Topology

Length:
213
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.23623000000001
Exp number, first 60 AAs:
2.21964
Total prob of N-in:
0.11093
outside
1  -  213
 
 

Population Genetic Test Statistics

Pi
239.333748
Theta
177.472591
Tajima's D
1.212566
CLR
0
CSRT
0.72196390180491
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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