SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01933  Validated by peptides from experiments
Annotation
hypothetical_protein_KGM_08437_[Danaus_plexippus]
Full name
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial      
Location in the cell
Nuclear   Reliability : 3.581
 

Sequence

CDS
ATGCTAAGAAGTACACCAGTATTATGTCGAACTTTGACGAACAAGATTGAAGATATTTCTACTCATACAGGCCAGAAATGGGATTCTGATGACTACAGGCTGGTAAGATTTACTAATGCGCCAAAACAAGTAAATCCGAATTGGGCCGTAAATTTAATTGCGGAAATACCTCCTAAAGAAGTAACTGAAAGAGTTGTTTGGTGTGATGGAGGTAGTGGCCCAGAGGGTCATCCACGAGTGTATATTAATTTAGATAAACCAGGTGACCATTCATGTGGATACTGTGGATTAAGATTCATAAAAAAAACTGGTCATTAA
Protein
MLRSTPVLCRTLTNKIEDISTHTGQKWDSDDYRLVRFTNAPKQVNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYCGLRFIKKTGH

Summary

Description
Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Similarity
Belongs to the complex I NDUFS6 subunit family.
EMBL
KZ149895    PZC78814.1    NWSH01000193    PCG78541.1    ODYU01012086    SOQ58201.1    + More
AGBW02012530    OWR44910.1    KQ460398    KPJ15170.1    KQ459601    KPI93853.1    GAIX01005914    JAA86646.1    GGMR01012148    MBY24767.1    PYGN01000485    PSN45546.1    GALX01005495    JAB62971.1    GACK01006421    JAA58613.1    CH902620    EDV31783.1    EZ406169    ACX53965.1    GEFH01001644    JAP66937.1    GFPF01010117    MAA21263.1    BT127961    AEE62923.1    GEDV01006605    JAP81952.1    GDIQ01254467    LRGB01002190    JAJ97257.1    KZS08532.1    KQ971343    EFA04681.1    APGK01051866    KB741207    KB632327    ENN72902.1    ERL92519.1    GDKW01002168    JAI54427.1    ACPB03005117    GAHY01001953    JAA75557.1    LJIJ01000094    ODN02839.1    KK853366    KDR08107.1    CH933807    EDW12781.1    GDIQ01088370    JAN06367.1    CCAG010002037    GDIQ01192126    JAK59599.1    GDAI01000174    JAI17429.1    GDIP01026776    JAM76939.1    GFXV01002268    MBW14073.1    GFDG01000378    JAV18421.1    GGLE01003371    MBY07497.1    GEZM01024260    JAV87821.1    GEBQ01020242    JAT19735.1    KK107167    EZA56346.1    GFDF01001721    JAV12363.1    ABLF02024711    QOIP01000010    RLU17418.1    GL732554    EFX79018.1    GBBK01001326    JAC23156.1    GBBK01001324    JAC23158.1    GFAC01007093    JAT92095.1    AK340083    BAH70753.1    GBZX01002613    JAG90127.1    GFWV01014454    MAA39183.1    CH963920    EDW77551.1    CH954177    EDV57832.1    JRES01000186    KNC33513.1    GGMS01008540    MBY77743.1    AJVK01022836    LBMM01007019    KMQ90116.1    CM002910    KMY88257.1    GDIQ01259440    JAJ92284.1    CM000361    EDX03793.1    AE014134    BT011535    AAF52221.1    AAS15671.1    GBXI01012523    JAD01769.1    CH480820    EDW54341.1    GEDC01027816    JAS09482.1    DS235093    EEB11845.1    OUUW01000006    SPP82237.1    ABJB010209339    DS640379    EEC01816.1    GECZ01019815    JAS49954.1    CM000157    EDW88379.1    GAMC01000955    JAC05601.1    CH479180    EDW28704.1    GL888237    EGI64192.1    CH916368    EDW03287.1    GAKP01003417    JAC55535.1    GBYB01012485    JAG82252.1    KZ288478    PBC25275.1    JR051996    AEY61605.1    GECZ01018770    JAS50999.1    CP012523    ALC38501.1    GECZ01030149    JAS39620.1    KQ982706    KYQ51876.1    KK854307    PTY14441.1    CH379060    EAL33577.2    GDIP01205804    JAJ17598.1    GL435766    EFN72681.1    GDHF01031979    GDHF01023074    GDHF01019564    GDHF01015786    JAI20335.1    JAI29240.1    JAI32750.1    JAI36528.1    GL446286    EFN88068.1    KQ434893    KZC10602.1    GEFM01003278    JAP72518.1    KQ414700    KOC63385.1    GADI01005425    JAA68383.1    KQ981215    KYN44572.1    CH940649    EDW64241.1    GL767355    EFZ13756.1   
Pfam
PF10276   zf-CHCC
Interpro
IPR019401   Znf_CHCC        + More
IPR016668   NDUFS6       
PDB
5GUP     E-value=3.46174e-23,     Score=261

Ontologies

Topology

Subcellular location
Mitochondrion inner membrane  
Length:
105
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.26428
outside
1  -  105
 
 

Population Genetic Test Statistics

Pi
177.941181
Theta
159.845167
Tajima's D
0.346191
CLR
1.101758
CSRT
0.467526623668817
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28467696 QVNDISDAGRDEIENIQQSSK 95.45 2e-09
28556443 VYINLDKPGDHSCGYCGLR 100.00 7e-09
28556443 IEDISTHTGQK 100.00 7e-09
28556443 TLSSALLYMQR 100.00 7e-09
26822097 VYINIDKPGDHSCGYCGIR 100.00 1e-05
26280517 VVIVNDMCNYMAK 100.00 1e-05
28467696 VVVQQETVR 100.00 1e-05
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