SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01928
Pre Gene Modal
BGIBMGA005933
Annotation
PREDICTED:_E3_ubiquitin-protein_ligase_Su(dx)_[Bombyx_mori]
Full name
E3 ubiquitin-protein ligase      
Location in the cell
PlasmaMembrane   Reliability : 2.578
 

Sequence

CDS
ATGAATGAAAATATATCTTCACTCACTGCTCCAATTTCTGTGTCCACATATCATCAACTGAGCTTAACAGTGGAATCAGCAAATATAAAAAATTCAGGCTTGTTCAAACCAAATCCATACCTGCAAGTTATAATTGATGATAAAATATTGAGAAAGACTGAAGTTATAAGGAACACCTTGCATCCAAAATGGAAAGAAGATCTTACTATTTTGGTGACGCCACAATCGCAATTACTGTTCCGTCTTGCAGATTATCATAGCTTTAGGAAAGACAATGTGATTGGTGAAAAAAAAGTGAACCTATTAAAAGTTTTGTTTTACTGTAATGGGAAATGTGAGAATTTAGAACTTACATTAGATTTAATGAAAACATCTTCTCAAGAGAATACTAGTGGAAATGCTGAGGTAAAAACAGCAGAACTGGTGTTGCTTCTAGATGGCTTAAGAATTGACCCTGGAGTGTTGACACAAACACGTGAATTACTTGGTGAAACGGCAAATACTGCAGCTCCCCTTAATGAAGGGGTGCGAGCCAGAATCAGAATGCGCAACAATCCTGAGACTGTTAGATCCATGATGCGATCACTAACACTTGGACCACCTCCAGGACCTCCACCAATGAGCAATGGGTCTATACATTTACCGAGTACTGCAACACAGTCATCATCAGAAACTGCAGGCCCCTCACAGCAGTCACGCCTGCCTGGTACACAGGATCCAACATCAACACAGCCAACATCTGCTAATACTGCTTACCCTAATGCTGCTGAGGAGCCTTTGCCTCCTGGGTGGGAAATGAGATATGATGGTTATGGTAGACGGTACTATGTGGATCACAACACTCGGTCAACATCGTGGGAACGTCCACAACCGTTGCCGGCAGGTTGGGAGGTGCGGCGCGACGCTCGTGGGCGCGTGTATTACGTGGACCACAACACGCGCACGACCACGTGGCAGCGCCCCGACACCGAGCGGCTGGCGCGCTTCCAGCACTGGCGCGGCGAGCGGCGCCACGTAGTCGCGCAGGGCAACCAGCGCTTCCTCTACCCGCACGTGCAGCCGACGCACCAGCCCGACGGAGCCGAACACGAATCACAAACAGGAGTGGCGGGCGCAGGTGGTGGGTCCACTCCTGCCCCGGATGACGGTCTGGGCGCACTGCCCGCCGGGTGGGAGCGTCGTGTGCAACCCGACGGACGCGTATACTACGTTAACCACAAGAACCGCACTACACAATGGGAGGACCCACGAACCCAGGGGCAAGAGGTGAGCGGCGTGGAAGAAGTTCTGCCAGCGGGCTGGGAGATCCGCTTCACAGAGGAAGGCACGCGGTACTTCGTGGACCACAACACGCGCACCACCACGTTCCAGGACCCGCGGCCGGGCGCGCCGCAGGGCCCGCAGGGAGCGTACGGCGTGCCCCGCGCCTACGAACGATCCTTCCGCTGGAAGCTCAGCCAGTTCCGTTATCTCTGCCAGAGTAACGCGCTACCCAGCCACATCAAGATTACACTCTCGCGGCAGACACTCTTCGAGGACTCCTACCATCAGATAATGAGGCTACCTGCTTACGAACTCCGCCGACGGCTTTACATAATATTCCGTGGAGAGGAAGGGCTGGACTACGGTGGAGTCAGTCGAGAGTGGTTTTTCCTTTTGTCGCACGAAGTTTTGAATCCCATGTACTGTCTGTTCGAGTACGCCAACAAGAACAACTACAGCCTCCAGATCAATCCCGCCAGCTACGTGAACCCCGACCATCTGCTGTATTTTAAATTTATCGGAAGATTCATAGCGATGGCACTGTATCATGGCAGATTCATATATTCCGGGTTCACGATGCCCTTCTACAAGCGAATGTTGAATAAGAAGTTGACGATGAAAGATATCGAGTCGATCGATCCAGAGTTCTACAACTCGCTTGTATGGATCAAGGACAACAACATCGACGACTGCGGTCTCGAGATGTGGTACAGCGTTGATTTTGAAGTTCTCGGTCAAGTTATACACCACGAACTGAAACCGGGCGGCGACAAGGAACGCGTTACTGAAACAAATAAAGAACAGTATTTACAACTAGTCACACAATGGCGCATGACGAGGGGCATCGAAGAACAAACAACGGCCTTCCTCGATGGATTTAATGAGGTGGTGCCCCTCGAGTGGTTGAAGTACTTCGACGAACGCGAATTGGAATTGATGCTGTGCGGCATGCAGGAGGTCGATGTCGACGACTGGCAACGGAACACGATTTATAGACATTACACGCGAACCAGCAAACAAGTTATGTGGTTTTGGCAGTTTGTAAGGCAAATGGATAATGAAAAACGAGCACGATTACTTCAGTTTGTGACGGGTACATGCAGAGTTCCAGTAGGTGGTTTTGCGGAATTAATGGGCTCTAATGGACCCCAAAGATTTTGTATAGAAAAGGTTGGCAAAGACACATGGCTGCCGCGGTCGCATACTTGTTTCAACAGACTCGACCTCCCTCCGTATAAAAGTTACGAACAGCTGTGCGAGAAACTGAACTACGCAATAGAAGAAACTGAAGGATTTGGACAAGAATGA
Protein
MNENISSLTAPISVSTYHQLSLTVESANIKNSGLFKPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLLFRLADYHSFRKDNVIGEKKVNLLKVLFYCNGKCENLELTLDLMKTSSQENTSGNAEVKTAELVLLLDGLRIDPGVLTQTRELLGETANTAAPLNEGVRARIRMRNNPETVRSMMRSLTLGPPPGPPPMSNGSIHLPSTATQSSSETAGPSQQSRLPGTQDPTSTQPTSANTAYPNAAEEPLPPGWEMRYDGYGRRYYVDHNTRSTSWERPQPLPAGWEVRRDARGRVYYVDHNTRTTTWQRPDTERLARFQHWRGERRHVVAQGNQRFLYPHVQPTHQPDGAEHESQTGVAGAGGGSTPAPDDGLGALPAGWERRVQPDGRVYYVNHKNRTTQWEDPRTQGQEVSGVEEVLPAGWEIRFTEEGTRYFVDHNTRTTTFQDPRPGAPQGPQGAYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITLSRQTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDDCGLEMWYSVDFEVLGQVIHHELKPGGDKERVTETNKEQYLQLVTQWRMTRGIEEQTTAFLDGFNEVVPLEWLKYFDERELELMLCGMQEVDVDDWQRNTIYRHYTRTSKQVMWFWQFVRQMDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLCEKLNYAIEETEGFGQE

Summary

Catalytic Activity
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.
EC Number
2.3.2.26
EMBL
BABH01005063    BABH01005064    ODYU01008865    SOQ52833.1    KZ149895    PZC78817.1    + More
KQ459601    KPI93858.1    AGBW02012530    OWR44915.1    KQ460398    KPJ15175.1    JTDY01000501    KOB76883.1    KK853366    KDR08105.1    NEVH01004408    PNF39756.1    PNF39755.1    GDKW01000884    JAI55711.1    GFDF01004448    JAV09636.1    GBHO01035810    GBHO01035809    GDHC01009815    JAG07794.1    JAG07795.1    JAQ08814.1    GFDF01004449    JAV09635.1    GFTR01008126    JAW08300.1    GBGD01000472    JAC88417.1    GDHC01004328    JAQ14301.1    GEZM01002446    JAV97253.1    GBHO01035808    GBHO01035807    JAG07796.1    JAG07797.1    NNAY01000110    OXU30875.1    GEDC01025724    JAS11574.1    CVRI01000055    CRL01599.1    KQ971343    EFA04169.1    GBYB01011384    GBYB01011390    GBYB01014650    GBYB01014651    JAG81151.1    JAG81157.1    JAG84417.1    JAG84418.1    CH933807    EDW13501.1    AAAB01008984    EAA14748.3    PYGN01000485    PSN45542.1    CP012523    ALC40300.1    AAZO01002893    DS235226    EEB13629.1    JXJN01023458    JXJN01023459    UFQS01000295    UFQT01000295    SSX02563.1    SSX22937.1    GGMR01015041    MBY27660.1    ABLF02032557    CM000157    EDW87320.1    GGMS01001607    MBY70810.1    KB631899    ERL86970.1    GFXV01003325    MBW15130.1    CH954177    EDV57408.1    CH916368    EDW02765.1    KA646017    AFP60646.1    CCAG010009633    CH940649    EDW64368.1    KRF81580.1    OUUW01000004    SPP79309.1    CH916379    EDV94215.1    CH379060    EAL34017.2    KRT04397.1    APGK01040876    KB740984    ENN76323.1    GECU01033162    JAS74544.1    SPP79310.1    GDIP01167370    JAJ56032.1    GDIP01189065    JAJ34337.1    GDIP01146124    GDIP01061882    JAM41833.1    GDIQ01105974    JAL45752.1    GDIP01118728    JAL84986.1    GDIQ01223438    GDIQ01210582    GDIQ01159007    GDIQ01159006    GDIQ01154504    GDIQ01064348    GDIQ01062846    GDIQ01047656    JAK97221.1    GDIP01039391    JAM64324.1    GDIP01253004    GDIP01179821    JAJ43581.1    LRGB01001581    KZS11221.1    GDIQ01265968    GDIQ01265967    JAJ85757.1    GDIP01189066    JAJ34336.1    GDIQ01213686    JAK38039.1    GDIQ01194444    GDIQ01096436    JAL55290.1    GDIQ01192705    GDIQ01092341    JAL59385.1    GDIP01193531    JAJ29871.1    GDIP01181668    JAJ41734.1    GDIQ01168303    JAK83422.1    KZ288478    PBC25272.1    GDIP01130175    JAL73539.1    HACA01008022    CDW25383.1    GDIQ01157006    GDIQ01157005    JAK94720.1    GL435766    EFN72678.1    EF173367    ABM68581.1    GL446286    EFN88071.1    GANO01000075    JAB59796.1    AXCN02000824    LBMM01005967    KMQ91062.1    GFDL01000997    JAV34048.1    GFDL01001011    JAV34034.1    GFDL01000980    JAV34065.1    GFDL01000986    JAV34059.1    KK107167    QOIP01000010    EZA56343.1    RLU18194.1    JXUM01140112    KQ569008    KXJ68796.1    KQ976565    KYM80474.1    GFDL01000978    JAV34067.1    GFDL01000994    JAV34051.1    KQ436164    KOX67413.1    KQ981215    KYN44584.1    ADTU01002834    GDIQ01231083    JAK20642.1   
Pfam
PF00632   HECT        + More
PF00168   C2
PF00397   WW
Interpro
IPR000569   HECT_dom        + More
IPR024928   E3_ub_ligase_SMURF1       
IPR035983   Hect_E3_ubiquitin_ligase       
IPR035892   C2_domain_sf       
IPR036020   WW_dom_sf       
IPR000008   C2_dom       
IPR001202   WW_dom       
SUPFAM
SSF51045   SSF51045        + More
SSF56204   SSF56204       
Gene 3D
PDB
5XMC     E-value=0,     Score=2067

Ontologies

Topology

Length:
856
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.60131
Exp number, first 60 AAs:
0.00552
Total prob of N-in:
0.00136
outside
1  -  856
 
 

Population Genetic Test Statistics

Pi
214.501122
Theta
161.686182
Tajima's D
1.307185
CLR
0.272131
CSRT
0.740762961851907
Interpretation
Uncertain
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