Gene

KWMTBOMO01925  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006215

Annotation

PREDICTED:_endoplasmic_reticulum-Golgi_intermediate_compartment_protein_3_[Amyelois_transitella]

Location

Bomo_Chr4(+):8166164-8174786      View in EpiBrowser

Full name

Endoplasmic reticulum-Golgi intermediate compartment protein 3      

Location in the cell

Nuclear   Reliability : 2.54

CDS

ATGACGCAATTCATTGACAAATTCAAACAATTAGACGCCTATGCTAAGACTTTGGAAGATTTTAGAGTTAAAACTACAACGGGGGCAACCGTTACAATCATTGGTGGCTGTATAATGATACTGCTGTTTATGTCTGAACTGCATACTTACCTATCCCCAAACATTTCAGAAGAACTTTTTGTGGATACATCCAGAGGCCACAAATTACGCATTAACTTAGATATTATAGTACCTACAATATCATGTAACTATTTAGTTCTAGATGCTATGGATTCTTCTGGTGAACAGCATCTTCAAATGGAACAAAACATTCATAAGAGGAGATTGGATCTCGATGGTAATGCGATTGAAGAACCAAAAAAAGAAGAAATATCAACAGCATCAACATTGAAGCAAAACAACAGTGAAATAGCAACATTAACATGCGGTAGCTGTTATGGAGCAGCTTTCAATGAGTCTCAATGCTGCAATACATGTGATGATGTAAAAGAAGCATATAGATTGCGAAGGTGGGCTCTTCCCCATTTAAGTACTATAGAACAATGCAAAAATGATGAATCTGTTGAGAAATTGAATTTAGCTCTCAAAGAAGGATGTCAAATATATGGTTACATGGAAGTAAACAGAGTTGGTGGCAGTTTCCACATTGCACCTGGAAAAAGCTTCACAATAAGTCATGTTCATGTACATGATGTGCAACCATTTTCATCATCGGTATTTAATACAACACATATTATAAAACATTTGTCATTCGGAACTGATATTGAAGGTGCTAATACAGCTCCACTGAATGGAATCATTGGACTTGCCACTGAAGGTGCAATGATGTTTCAGTATTATTTAAAAATAATACCAACTATGTATGTAAAGTTAGATAAAACAGTATTACACACAAACCAATTCTCCGTCACTAGACATCACAAATCAGTTTCGAATGTCCATGCAGAATCTGGTATGCCTGGTGCTTTCTTCAGCTATGAATTATCACCACTAATGGTAAAATACACAGAAAAAGAAAGGTCCATTGGTCATTTTGCTACAAACATCTGTGCTATAATTGGAGGAGTGTTTACTGTTGCAGGCATTTTTGATGCTCTATTGTATCACTCAATTAATGCATTTGAAAACAAACTATTGCTTGGTAAAACAGGATAA

Protein

MTQFIDKFKQLDAYAKTLEDFRVKTTTGATVTIIGGCIMILLFMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQNNSEIATLTCGSCYGAAFNESQCCNTCDDVKEAYRLRRWALPHLSTIEQCKNDESVEKLNLALKEGCQIYGYMEVNRVGGSFHIAPGKSFTISHVHVHDVQPFSSSVFNTTHIIKHLSFGTDIEGANTAPLNGIIGLATEGAMMFQYYLKIIPTMYVKLDKTVLHTNQFSVTRHHKSVSNVHAESGMPGAFFSYELSPLMVKYTEKERSIGHFATNICAIIGGVFTVAGIFDALLYHSINAFENKLLLGKTG

Description

Possible role in transport between endoplasmic reticulum and Golgi.

Similarity

Belongs to the ERGIC family.

Keywords

Alternative splicing   Complete proteome   Endoplasmic reticulum   ER-Golgi transport   Golgi apparatus   Membrane   Reference proteome   Transmembrane   Transmembrane helix   Transport  

Feature

chain  Endoplasmic reticulum-Golgi intermediate compartment protein 3
splice variant  In isoform 2.

Uniprot

A0A2W1C125   A0A1E1W2K1   A0A212ETY1   A0A2H1WE21   A0A2A4K4E8   A0A194PK96   + More
I4DNU3   A0A0C9QKJ7   D6WNW2   A0A2P8XMZ8   A0A2A4K2P6   A0A194RBH0   A0A1Y1LN37   A0A067R5D3   A0A2J7PUV3   A0A0M8ZZB3   A0A026WCF8   A0A088A1P1   A0A3L8DQQ9   E2C7C3   A0A195DCU6   E2AF11   A0A182J0F4   A0A195FU54   A0A182M0T2   A0A182VDA9   A0A0L7QVM0   A0A182P1K0   F4WLY7   A0A182X022   Q7PZY5   A0A182HPQ6   A0A182WD79   A0A195C897   A0A195BBK4   A0A158N9Q3   A0A182MXD6   A0A182JV06   U5ENV3   A0A182QDG5   S4P833   A0A0J7NPN0   A0A2M4AKL9   A0A2M4AJY6   A0A2M4AKG1   A0A1L8DUP3   A0A084WM31   A0A2M4BR46   A0A1W4X3F5   W5JGZ1   A0A336JZA8   A0A1B0DCJ7   A0A1Q3FDV6   A0A2M3Z8P6   B0W566   A0A1L8DUL1   T1E236   A0A182FV96   N6UAJ4   A0A310SKT4   A0A1B6KVD9   E0VF22   A0A023ESB5   A0A182H4M6   A0A1S4FJC1   Q16YX9   K7JAQ0   A0A1B6ETF0   A0A1B6I9N7   A0A2C9LAV4   A0A1S3L863   A0A3P9ADG5   E9H0X6   A0A182R1W9   C3YMQ4   A0A3P8WX39   A0A0P6GCF7   A0A1S3P0Y6   U4UB47   A0A226EYV1   A0A2D0S1H6   A0A1J1HZ61   C1BMS5   A0A0P6AUV6   A0A0P5H1W4   A0A1W4ZAW3   A0A3B4FZS3   A0A3P9CGU0   A0A3B3RNJ0   B2GQE2   Q803I2   A0A1A8QN24   A0A3B4DSL1   A0A1S3L852   A0A3P8WWF8   A0A3P9ADC6   A0A2U9BF06   A0A3P9Q9T4   A0A060WA88   C0H9D0  

Pubmed

28756777    22118469    26354079    22651552    18362917    19820115    + More
29403074    28004739    24845553    24508170    30249741    20798317    21719571    12364791    14747013    17210077    21347285    23622113    24438588    20920257    23761445    24330624    23537049    20566863    24945155    26483478    17510324    20075255    15562597    25069045    21292972    18563158    24487278    25186727    29240929    24755649    20433749   

EMBL

KZ149895    PZC78820.1    GDQN01009880    JAT81174.1    AGBW02012530    OWR44917.1    + More
ODYU01007708    SOQ50734.1    NWSH01000193    PCG78532.1    KQ459601    KPI93861.1    AK403141    BAM19583.1    GBYB01015293    JAG85060.1    KQ971343    EFA04394.1    PYGN01001685    PSN33355.1    PCG78531.1    KQ460398    KPJ15178.1    GEZM01051282    JAV75052.1    KK852691    KDR18365.1    NEVH01021193    PNF20100.1    KQ435803    KOX73156.1    KK107293    EZA53366.1    QOIP01000005    RLU22780.1    GL453369    EFN76110.1    KQ980989    KYN10657.1    GL438984    EFN67966.1    KQ981264    KYN43956.1    AXCM01004908    KQ414725    KOC62677.1    GL888217    EGI64631.1    AAAB01008986    EAA00591.3    APCN01003267    KQ978220    KYM96358.1    KQ976528    KYM81918.1    ADTU01001412    GANO01000433    JAB59438.1    AXCN02001696    GAIX01006121    JAA86439.1    LBMM01002724    KMQ94430.1    GGFK01007983    MBW41304.1    GGFK01007782    MBW41103.1    GGFK01007923    MBW41244.1    GFDF01003934    JAV10150.1    ATLV01024365    KE525351    KFB51275.1    GGFJ01006312    MBW55453.1    ADMH02001525    ETN62180.1    UFQS01000039    UFQT01000039    SSW98086.1    SSX18472.1    AJVK01005139    GFDL01009346    JAV25699.1    GGFM01004121    MBW24872.1    DS231841    EDS34814.1    GFDF01003971    JAV10113.1    GALA01001094    JAA93758.1    APGK01036710    KB740941    ENN77656.1    KQ760343    OAD60845.1    GEBQ01024551    JAT15426.1    DS235100    EEB11997.1    GAPW01001962    JAC11636.1    JXUM01109816    KQ565356    KXJ71061.1    CH477506    EAT39848.1    AAZX01000979    GECZ01028543    JAS41226.1    GECU01024050    JAS83656.1    GL732582    EFX74535.1    GG666531    EEN58395.1    GDIQ01036801    JAN57936.1    KB632225    ERL90282.1    LNIX01000001    OXA62763.1    CVRI01000033    CRK92612.1    BT075904    ACO10328.1    GDIP01025158    LRGB01003134    JAM78557.1    KZS04086.1    GDIQ01239156    JAK12569.1    BC164701    AAI64701.1    BC044474    BC100125    HAEH01012320    SBR94504.1    CP026248    AWP02262.1    FR904458    CDQ64042.1    BT058936    ACN10649.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000007266    UP000245037    UP000053240    + More
UP000027135    UP000235965    UP000053105    UP000053097    UP000005203    UP000279307    UP000008237    UP000078492    UP000000311    UP000075880    UP000078541    UP000075883    UP000075903    UP000053825    UP000075885    UP000007755    UP000076407    UP000007062    UP000075840    UP000075920    UP000078542    UP000078540    UP000005205    UP000075884    UP000075881    UP000075886    UP000036403    UP000030765    UP000192223    UP000000673    UP000092462    UP000002320    UP000069272    UP000019118    UP000009046    UP000069940    UP000249989    UP000008820    UP000002358    UP000076420    UP000087266    UP000265140    UP000000305    UP000075900    UP000001554    UP000265120    UP000030742    UP000198287    UP000221080    UP000183832    UP000076858    UP000192224    UP000261460    UP000265160    UP000261540    UP000000437    UP000261440    UP000246464    UP000242638    UP000193380   

Pfam

PF13850   ERGIC_N        + More
PF07970   COPIIcoated_ERV
PF01798   Nop
PF09785   Prp31_C
PF00270   DEAD
PF01465   GRIP
PF07717   OB_NTP_bind
PF00271   Helicase_C
PF04408   HA2

Interpro

IPR012936   Erv_C        + More
IPR039542   Erv_N       
IPR027105   Prp31       
IPR019175   Prp31_C       
IPR042239   Nop_C       
IPR012976   NOSIC       
IPR029012   Helix_hairpin_bin_sf       
IPR036070   Nop_dom_sf       
IPR002687   Nop_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR027417   P-loop_NTPase       
IPR007502   Helicase-assoc_dom       
IPR000237   GRIP_dom       
IPR011709   DUF1605       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       

SUPFAM

SSF89124   SSF89124        + More
SSF52540   SSF52540       

Gene 3D

1.10.246.90     1.10.287.660    

CDD

cd00079  HELICc

ProteinModelPortal

A0A2W1C125   A0A1E1W2K1   A0A212ETY1   A0A2H1WE21   A0A2A4K4E8   A0A194PK96   + More
I4DNU3   A0A0C9QKJ7   D6WNW2   A0A2P8XMZ8   A0A2A4K2P6   A0A194RBH0   A0A1Y1LN37   A0A067R5D3   A0A2J7PUV3   A0A0M8ZZB3   A0A026WCF8   A0A088A1P1   A0A3L8DQQ9   E2C7C3   A0A195DCU6   E2AF11   A0A182J0F4   A0A195FU54   A0A182M0T2   A0A182VDA9   A0A0L7QVM0   A0A182P1K0   F4WLY7   A0A182X022   Q7PZY5   A0A182HPQ6   A0A182WD79   A0A195C897   A0A195BBK4   A0A158N9Q3   A0A182MXD6   A0A182JV06   U5ENV3   A0A182QDG5   S4P833   A0A0J7NPN0   A0A2M4AKL9   A0A2M4AJY6   A0A2M4AKG1   A0A1L8DUP3   A0A084WM31   A0A2M4BR46   A0A1W4X3F5   W5JGZ1   A0A336JZA8   A0A1B0DCJ7   A0A1Q3FDV6   A0A2M3Z8P6   B0W566   A0A1L8DUL1   T1E236   A0A182FV96   N6UAJ4   A0A310SKT4   A0A1B6KVD9   E0VF22   A0A023ESB5   A0A182H4M6   A0A1S4FJC1   Q16YX9   K7JAQ0   A0A1B6ETF0   A0A1B6I9N7   A0A2C9LAV4   A0A1S3L863   A0A3P9ADG5   E9H0X6   A0A182R1W9   C3YMQ4   A0A3P8WX39   A0A0P6GCF7   A0A1S3P0Y6   U4UB47   A0A226EYV1   A0A2D0S1H6   A0A1J1HZ61   C1BMS5   A0A0P6AUV6   A0A0P5H1W4   A0A1W4ZAW3   A0A3B4FZS3   A0A3P9CGU0   A0A3B3RNJ0   B2GQE2   Q803I2   A0A1A8QN24   A0A3B4DSL1   A0A1S3L852   A0A3P8WWF8   A0A3P9ADC6   A0A2U9BF06   A0A3P9Q9T4   A0A060WA88   C0H9D0  

PDB

3ZLC     E-value=1.30804e-09,     Score=151

KEGG

101741074    K20367 endoplasmic reticulum-Golgi intermediate compartment protein 3 | (RefSeq) endoplasmic reticul

GO

GO:0016021   GO:0006890   GO:0005783   GO:0030176   GO:0030173   GO:0006888   GO:0030134   GO:0000244   GO:0046540   GO:0003676   GO:0004386   GO:0005524   GO:0033116  

PANTHER

PTHR13904  

Subcellular location

Endoplasmic reticulum-Golgi intermediate compartment membrane  
Golgi apparatus  
cis-Golgi network membrane  
Endoplasmic reticulum membrane  

Length:

384

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

53.15561

Exp number, first 60 AAs:

21.16445

Total prob of N-in:

0.78432

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  340

TMhelix

341  -  363

inside

364  -  384

 

 

Pi

196.939448

Theta

17.584335

Tajima's D

0.234981

CLR

164.957774

CSRT

0.44242787860607

Interpretation

Uncertain