Gene

KWMTBOMO01924  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006214

Annotation

very_low-density_lipoprotein_receptor_isoform_1_precursor_[Bombyx_mori]

Location

Bomo_Chr4(+):8156064-8161747      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.123

CDS

ATGGCTCGACACGCGTTTCTGTGTCTCGGTGTGTTATTAGTTGGTTCGCTGGTATGCAGTACTTCTCGTGTGAAGCGACAAGATGACGACGGAGCTGGAGATGAGCCGAACGCTGATCAGTTGTGCGACGGTAGACCCGCCGATGAATATTTCCGTCTCACCACCGAAGGTGACTGCCGCGATGTCGTCAGGTGCGACCAGGGCCTAGAGAACAGCGTCACCAGGCTCGCCTCAGTGCGCTGCCCCGGAGGTCTCGCCTTCGATATCGACCGTCAAACTTGTGATTGGAAAACGAATGTTAAGAATTGCGATCAAATAGAAAAGCCACGAAAAGTTTTACCAATCTTGAAAACGGACGAACCTATTTGTCCTGAAGGTAAATTGGCTTGTGGCAGCGGAGATTGCATTGAAAAAGAATTGTTCTGTAATGGTAAACCAGACTGCAAAGATGAATCCGATGAAAATGCTTGCACTGTCGAACTGGACCCAAATAGAGCGCCTGACTGTGATCCTAACCAGTGCGTCCTACCTGACTGTTTCTGTTCTGCTGACGGTACACGTATCCCAGGTGGAATTGAACCAAATCAAGTACCTCAAATGGTTACTATTACATTTAACGGTGCTGTGAATGTTGACAACATCGATTTATATGAACAAATATTCAACGGTAATCGTCATAATCCTAACGGTTGTCAAATTAAAGGAACGTTTTTCGTCTCACACAAGTATACTAACTATGCAGCTGTACAAGAATTACACCGCAAAGGACATGAAATTTCTGTATTTTCCATAACTCATAAAGATGATCCGCAATACTGGACGAGTGGTTCGTACGATGATTGGTTGGCTGAAATGGCCGGAGCTCGTCTTATCATTGAACGTTACGCAAATATCACTGACTCTTCTATAATTGGAGTTCGGGCGCCTTACTTACGTGTCGGTGGAAACAAACAATTCGAAATGATGGGTGATCAATACTTCGTGTATGATGCATCCATCACTGCTCCTCTTGGACGCGTCCCGATATGGCCTTACACATTGTATTTCCGCATGCCACATAAGTGTAACGGCAACGCCCACAACTGTCCGTCTAGAAGTCACCCCGTTTGGGAAATGGTCATGAATGAATTGGACAGAAGGGACGATCCCACATTTGATGAATCTCTACCAGGTTGCCACGTTGTAGACTCATGTTCAAACATCCAAAGTGGTGAACAATTTGGACGTCTTCTCCGACACAACTTCAACCGTCATTACACAACCAACCGCGCTCCCTTAGGCTTCCACTTCCACGCCTCCTGGCTTAAATCTAAAAAAGAATACAGAGATGAATTAATCAAGTTTATCGAAGAAATGTTGGAAAAGAACGATGTATACTTCACTTCACTAATTCAGGTTATTCAATGGATGCAAAACCCTACCGAATTATCATCACTCCGTGACTTCCAAGAATGGAAACAAGATAAATGTGACGTCAAAGGTCAACCTTTCTGTTCCCTGCCGAACGCCTGTCCACTAACAACTAGAGAGTTACCAGGAGAGACATTACGTCTTTTCACTTGTATGGAGTGTCCTAACAACTATCCATGGATCTTGGATCCTCAGGGCGAAGGATACAACGTTAAGAAGTGA

Protein

MARHAFLCLGVLLVGSLVCSTSRVKRQDDDGAGDEPNADQLCDGRPADEYFRLTTEGDCRDVVRCDQGLENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIERYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPHKCNGNAHNCPSRSHPVWEMVMNELDRRDDPTFDESLPGCHVVDSCSNIQSGEQFGRLLRHNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCDVKGQPFCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPQGEGYNVKK

Similarity

Belongs to the universal ribosomal protein uS9 family.

Uniprot

Q1HQA6   H9J9M1   Q1HQA5   A0A2W1BWV5   A0A2A4K3P0   A0A1E1W4N0   + More
A0A2H1WCQ4   Q1HQA4   S5Z6S1   A0A0G2RLP0   A0A2P0MAJ4   A0A194RD29   A0A2A4K3A7   A0A194PLI9   A0A0A7R7B5   S5YT69   B2DBL8   A0A0L7LN78   I4DM00   A0A212ETV0   A0A2U7LR78   A0A2R2PTF4   A0A1L2DBW3   A0A182JAH8   A0A0A9WUV8   A0A2J7PUN9   A0A182Q6G6   A0A2K8JSV4   A0A1S4F4K8   A0A023ETQ8   A0A1S3DAU6   Q17FD0   A0A182N2S3   A0A2M4AHJ5   A0A1B0CSR2   A0A182FB83   A0A182RXV8   A0A1J1HN62   A0A182UNW3   A0A182Y9I7   A0A2P8XHQ7   A0A336LPN1   A0A182HHM6   A0A182MBH9   A0A1Q3FZ89   A0A182WE18   A0A182PMW5   A0A067RGU7   A0A0P6GVX1   A0A1Q3FMZ7   A0A023F5Q3   A0A224XL71   A0A161TH04   A0A0C9QC03   A0A0F6PJH0   A0A088A1P7   A0A2R2PTF2   A0A0L7QVU3   A0A1B6HBE8   A0A182JAH7   A0A336M3L8   A0A1L2DBY0   A0A182GLF5   Q7PKC7   A0A3L8DH86   A0A182N2S2   A0A084WIH1   A0A1S4F4T2   A0A139WI93   A0A182FB84   Q17FD1   A0A182HHM5   A0A182RXV7   A0A2M4AHD3   W5JTL4   A0A182WE17   B0WLQ8   A0A1A9XK26   A0A1W4XB71   A0A1B0ANM8   A0A1Q3FN30   A7U8D0   A0A1A9ZBV8   A0A0T6B567   N6U849   A0A2J7PUR0   A0A336LSB4   J3JVM2   A0A1S3DC94   A0A2Z2Z237   W8B0I5   A0A2P1NQ38   A0A1J1HTI8   A0A0A1X909   A0A1B6CBX2   A0A1I8P760   Q06RG8   A0A0P6G7L7   A0A171AS08   X1WI58  

Pubmed

19121390    28756777    23628857    26354079    18712529    26227816    + More
22651552    22118469    27637332    25401762    26823975    24945155    17510324    25244985    29403074    24845553    25474469    24989071    26483478    12364791    14747013    17210077    30249741    24438588    18362917    19820115    20920257    23761445    23537049    22516182    24495485    25830018    18428030   

EMBL

DQ443146    HM450149    ABF51235.1    ADO24153.1    BABH01005058    DQ443147    + More
HM450150    ABF51236.1    ADO24154.1    KZ149895    PZC78821.1    NWSH01000193    PCG78528.1    GDQN01009134    JAT81920.1    ODYU01007709    SOQ50736.1    DQ443148    ABF51237.1    KC285591    KC295540    AGT28750.1    KP000852    AJG44547.1    KT781841    AOS49616.1    KQ460398    KPJ15180.1    PCG78529.1    KQ459601    KPI93863.1    KM598637    AJA30435.1    KC295541    AGT28749.1    AB264702    BAG30777.1    JTDY01000501    KOB76890.1    AK402318    BAM18940.1    AGBW02012530    OWR44920.1    KT781842    AOS49617.1    KR537804    ANA57444.1    KR537801    ANA57441.1    GBHO01031342    GBRD01011249    GDHC01004474    JAG12262.1    JAG54575.1    JAQ14155.1    NEVH01021193    PNF20055.1    AXCN02001087    KY031281    ATU83032.1    GAPW01000863    JAC12735.1    CH477271    EAT45315.1    GGFK01006944    MBW40265.1    AJWK01026427    AJWK01026428    AJWK01026429    AJWK01026430    AJWK01026431    CVRI01000012    CRK89496.1    PYGN01002090    PSN31537.1    UFQT01000099    UFQT01000360    SSX19870.1    SSX23524.1    APCN01002429    AXCM01001841    GFDL01002164    JAV32881.1    KK852691    KDR18357.1    GDIQ01040694    GDIQ01003925    JAN54043.1    GFDL01006074    JAV28971.1    GBBI01002214    JAC16498.1    GFTR01007074    JAW09352.1    GEMB01000725    JAS02412.1    GBYB01000764    JAG70531.1    KJ825887    AJQ20732.1    KR537805    ANA57445.1    KQ414725    KOC62666.1    GECU01035719    JAS71987.1    SSX19869.1    SSX23523.1    KR537802    ANA57442.1    JXUM01014451    JXUM01014452    JXUM01014453    KQ560404    KXJ82583.1    AAAB01008986    EAA43313.4    QOIP01000008    RLU19701.1    ATLV01023931    KE525347    KFB50015.1    KQ971342    KYB27624.1    EAT45314.1    GGFK01006870    MBW40191.1    ADMH02000120    ETN67707.1    DS231989    EDS30623.1    JXJN01000896    GFDL01006036    JAV29009.1    EU019712    ABU25224.1    LJIG01009733    KRT82489.1    APGK01045191    APGK01045192    APGK01045193    APGK01045194    KB741031    ENN74767.1    PNF20054.1    SSX19871.1    SSX23525.1    BT127290    AEE62252.1    KY681049    AUP42576.1    GAMC01014588    JAB91967.1    KY914479    AVP71459.1    CRK89497.1    GBXI01007134    JAD07158.1    GEDC01026362    JAS10936.1    DQ665309    ABI95429.1    GDIQ01048694    GDIQ01047199    GDIQ01040695    JAN46043.1    GEMB01000727    JAS02410.1    ABLF02025146   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More
UP000075880    UP000235965    UP000075886    UP000079169    UP000008820    UP000075884    UP000092461    UP000069272    UP000075900    UP000183832    UP000075903    UP000076408    UP000245037    UP000075840    UP000075883    UP000075920    UP000075885    UP000027135    UP000005203    UP000053825    UP000069940    UP000249989    UP000007062    UP000279307    UP000030765    UP000007266    UP000000673    UP000002320    UP000092443    UP000192223    UP000092460    UP000092445    UP000019118    UP000095300    UP000007819   

PRIDE

Q1HQA6    H9J9M1    Q1HQA5    Q1HQA4   

Pfam

PF00057   Ldl_recept_a        + More
PF01607   CBM_14
PF00380   Ribosomal_S9

Interpro

IPR002172   LDrepeatLR_classA_rpt        + More
IPR036055   LDL_receptor-like_sf       
IPR036508   Chitin-bd_dom_sf       
IPR011330   Glyco_hydro/deAcase_b/a-brl       
IPR023415   LDLR_class-A_CS       
IPR002557   Chitin-bd_dom       
IPR020574   Ribosomal_S9_CS       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR000754   Ribosomal_S9       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       

SUPFAM

SSF57424   SSF57424        + More
SSF57625   SSF57625       
SSF88713   SSF88713       
SSF54211   SSF54211       

Gene 3D

4.10.400.10     3.30.230.10    

CDD

cd00112  LDLa

ProteinModelPortal

Q1HQA6   H9J9M1   Q1HQA5   A0A2W1BWV5   A0A2A4K3P0   A0A1E1W4N0   + More
A0A2H1WCQ4   Q1HQA4   S5Z6S1   A0A0G2RLP0   A0A2P0MAJ4   A0A194RD29   A0A2A4K3A7   A0A194PLI9   A0A0A7R7B5   S5YT69   B2DBL8   A0A0L7LN78   I4DM00   A0A212ETV0   A0A2U7LR78   A0A2R2PTF4   A0A1L2DBW3   A0A182JAH8   A0A0A9WUV8   A0A2J7PUN9   A0A182Q6G6   A0A2K8JSV4   A0A1S4F4K8   A0A023ETQ8   A0A1S3DAU6   Q17FD0   A0A182N2S3   A0A2M4AHJ5   A0A1B0CSR2   A0A182FB83   A0A182RXV8   A0A1J1HN62   A0A182UNW3   A0A182Y9I7   A0A2P8XHQ7   A0A336LPN1   A0A182HHM6   A0A182MBH9   A0A1Q3FZ89   A0A182WE18   A0A182PMW5   A0A067RGU7   A0A0P6GVX1   A0A1Q3FMZ7   A0A023F5Q3   A0A224XL71   A0A161TH04   A0A0C9QC03   A0A0F6PJH0   A0A088A1P7   A0A2R2PTF2   A0A0L7QVU3   A0A1B6HBE8   A0A182JAH7   A0A336M3L8   A0A1L2DBY0   A0A182GLF5   Q7PKC7   A0A3L8DH86   A0A182N2S2   A0A084WIH1   A0A1S4F4T2   A0A139WI93   A0A182FB84   Q17FD1   A0A182HHM5   A0A182RXV7   A0A2M4AHD3   W5JTL4   A0A182WE17   B0WLQ8   A0A1A9XK26   A0A1W4XB71   A0A1B0ANM8   A0A1Q3FN30   A7U8D0   A0A1A9ZBV8   A0A0T6B567   N6U849   A0A2J7PUR0   A0A336LSB4   J3JVM2   A0A1S3DC94   A0A2Z2Z237   W8B0I5   A0A2P1NQ38   A0A1J1HTI8   A0A0A1X909   A0A1B6CBX2   A0A1I8P760   Q06RG8   A0A0P6G7L7   A0A171AS08   X1WI58  

PDB

5ZNT     E-value=1.02297e-150,     Score=1369

KEGG

732885    no KO assigned | (RefSeq) very low-density lipoprotein receptor

GO

GO:0003824   GO:0005576   GO:0005975   GO:0008061   GO:0006030   GO:0004099   GO:0005840   GO:0006412   GO:0003735   GO:0005515   GO:0016810   GO:0003707   GO:0004651   GO:0005634  

SignalP

Position:   1 - 21,         Likelihood:  0.993953

 

 

Length:

543

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.3986

Exp number, first 60 AAs:

1.33833

Total prob of N-in:

0.06962

outside

1  -  543

 

 

Pi

294.796612

Theta

226.787756

Tajima's D

1.221315

CLR

0

CSRT

0.726113694315284

Interpretation

Uncertain