Gene

KWMTBOMO01920

Pre Gene Modal

BGIBMGA006210

Annotation

PREDICTED:_anaphase-promoting_complex_subunit_5_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(+):8067784-8079812      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.371

CDS

ATGGAACCTAGTGAGAATTTAGACTTTGTAAAATTAATTAACATAAGAGCTAATATTGATAACATTACGCCTCACAAAATCGCTGTAGTAGCTTTCATTCGTGAATATGGACTTTTAAAAATAGAAGCAAAAAGAATGGTGGATTGCGCTGTGGCTCCAAAATATAGAAAGGATTTTTGTATGCTAGCCCTCAAATTAATACAGTGTCCAGACATGGAGTTCAAAGAATTAGAATCACTTCTCACGGATGGTCGGTACAATTTATTAAGTGTTCACCTACAAAATTTTTGTGTTAGACTGCAGAATATTTATGTGAATGGAATTAGTGCTCTTGTGGACTGTGTCACATCAACTGTTGACAAACTTATGATTGAGCAGAATGAGACCAATCCTTGTATTATAACAAGGTACAGTGTGTTAGGGCTGTATCTTAGAAGAATATTGTTGAATTTAGAGAAATTAACATTTGTGCAGACAGTTGCACTTTATAAAACATTTTGTCTCTATTATCAGAAGGGCAGACCTGGCCTTATGATGCGATCGTTAAGCAAGGAGAAATTAAATAACATGGAAGGAGTTGGAATATCAGCAACTAATGAAGACCCACGACCACTTGAGCTGTCAATTAAAATGAATATTGTAGATCGGAACAATTTATTGGAGGAAGGGCAATGGTCAAGGAAACAAGCAGAATTATTTACAGCTCAGCAAGCAAATTTGTTACAAATCAACGAGAAAAAAGCTCTACCTCCACCTCAGTTGCAAAAAATGATAATGCAAATTATAAATGATCTCCCAGACTACTCAGATATTCATTTTTTGAGTTTCTTGAATTGCTTACGAATGAAAGAGTTTTGTGGTGCTCAAGATTCCCTTTATAATTGTTTTGATCGGACCGTATTCAGTTTACCCGGAAACAATATTTGCACGGATAGAAATAAACATTTCCGTTACGCGGCTCTGAATCGAGCTGCAATGCACACACATTTTGGTCACAAAGAGCTAGCAATGGAGAGCGTGCGGGAGTCTGTGTCTCGTGCGCAGGAGGCGGGGGACAGTGCGTGCGTAGGTGCGGCGGGCGCGTGGGGTGCGCTGGCGGGAGGGCGGGCCCCCCGCGCCGCTCTGCTCGCTCACGCACCACGTTCCCCCCGTGCGCCCCGCTTGTTAGCCTCGGCCGCGCAATTACTCGCACAGCACGCTGCGCTCAATGCAGCCAAACCCGCCGACGTTTTTCAGATTATAACCAGAGGAGATACGATTAATTATCTCCATTCAATGACTGATTTGACCGTGGCGGGACTCGCGAATACGGCTGCTCTTTGGGCGCTGTACGGATTCACTGAAATGGCTTCAGTTAATTGCCAACTTCTTCTCAATCTCAATGCTAAATGCAGTGTCGTGTCGGAGGCGGCGGGCGCGCTCGGTGTGGCGGCGTGGCGCGGCGCGGGCGGTCTGTGTGCGGCGCTGGCGGCCCACTTCCCCTGCCCCGCCACCGCCGCGCTCGCTGCACGCGTTTGTGCACACCGCGCGCTTTTAGCCGGTAAATGGGAAGAGGCAGATGAAGGTATACGCCAGCTTGCATCATCGGACCGATGGGAAAGTCAACTATTGAAGGCTGAAATGTATTTCTTAAAGGGTGATGCGATGGAGGCTCTCGATTCTTTACAAGACGTATTAGATTTTTGTAAAACTGAAGACGATAGTTACCATTTCATTTCACTGCGATTGAAAGCCATGGTACTCATGTCACAAGTACAGCAATGCTTTAGTAGCGTACAGTCTGCGAACATTATGCTGTTGAATGAAGCTTTAGCCTTAGCAAAGAAGTATCACTTGCATTATTGGGCGACAACTGTTGAAATGCACATAGCCAATGTACAGTTGAATATGGGCTGTTCGAAAAACGCATTAGTTCTAGCTAGAAAAGCGTTACCTTTCATTATGGCGCACGGTAGTGCGTATGACTTAGGAAGAGCCATGTTGCTGTACACGAAATGTCGCATAGCTTCAGCACCTATATCAGGTGAATCACGCACTAACGTACTGCAGTCCTGCTGTGAGGCCCTAGAACTAGTTAAAAAGAACTTCACTAAAGTCGGAGCTCATTCTCGATTGGTTCAAACTCTGTATTTGCAGGCGCATTTGTATAATGATATTGGTAATCAATCAGCTCGGAATCAATGTGCGTGGTTATATAGACAACTTGATCAACAAAATCCAGTCGAAGCAACTAAAATGTTATTAGTCATGTATTAA

Protein

MEPSENLDFVKLINIRANIDNITPHKIAVVAFIREYGLLKIEAKRMVDCAVAPKYRKDFCMLALKLIQCPDMEFKELESLLTDGRYNLLSVHLQNFCVRLQNIYVNGISALVDCVTSTVDKLMIEQNETNPCIITRYSVLGLYLRRILLNLEKLTFVQTVALYKTFCLYYQKGRPGLMMRSLSKEKLNNMEGVGISATNEDPRPLELSIKMNIVDRNNLLEEGQWSRKQAELFTAQQANLLQINEKKALPPPQLQKMIMQIINDLPDYSDIHFLSFLNCLRMKEFCGAQDSLYNCFDRTVFSLPGNNICTDRNKHFRYAALNRAAMHTHFGHKELAMESVRESVSRAQEAGDSACVGAAGAWGALAGGRAPRAALLAHAPRSPRAPRLLASAAQLLAQHAALNAAKPADVFQIITRGDTINYLHSMTDLTVAGLANTAALWALYGFTEMASVNCQLLLNLNAKCSVVSEAAGALGVAAWRGAGGLCAALAAHFPCPATAALAARVCAHRALLAGKWEEADEGIRQLASSDRWESQLLKAEMYFLKGDAMEALDSLQDVLDFCKTEDDSYHFISLRLKAMVLMSQVQQCFSSVQSANIMLLNEALALAKKYHLHYWATTVEMHIANVQLNMGCSKNALVLARKALPFIMAHGSAYDLGRAMLLYTKCRIASAPISGESRTNVLQSCCEALELVKKNFTKVGAHSRLVQTLYLQAHLYNDIGNQSARNQCAWLYRQLDQQNPVEATKMLLVMY

Uniprot

A0A212ETZ8   H9J9L7   A0A151I9B3   A0A0C9R7U2   A0A195AZ33   A0A158NYD2   + More
A0A151IUC7   F4WSZ0   E9JD27   A0A154PLE9   A0A182H8Z9   A0A182PHG8   A0A182Y146   A0A182JPY6   A0A336M354   A0A182MKT3   A0A182RMI5   A0A084WKN8   A0A182VNY4   A0A232FPB2   A0A182WKG2   A0A182TJR2   A0A0P4W616   A0A182R195   A0A182X509   A0A182LJA7   A0A182HLV6   A0A2H8U052   Q7PNP4   K7IW14   J9JXZ2   A0A2S2NUA0   A0A286XDF2   A0A2Y9HYE7   A0A2K6PPR5   F7ALY9   A0A3M0K3G6   A0A2G8KRN2  

Pubmed

22118469    19121390    21347285    21719571    21282665    26483478    + More
25244985    24438588    28648823    20966253    12364791    20075255    21993624    25362486    17495919    29023486   

EMBL

AGBW02012530    OWR44924.1    BABH01005050    BABH01005051    KQ978296    KYM95364.1    + More
GBYB01006649    GBYB01008917    JAG76416.1    JAG78684.1    KQ976701    KYM77214.1    ADTU01003758    KQ980963    KYN11023.1    GL888331    EGI62694.1    GL771866    EFZ09197.1    KQ434964    KZC12695.1    JXUM01119709    KQ566318    KXJ70237.1    UFQT01000481    SSX24675.1    AXCM01010353    ATLV01024126    KE525349    KFB50782.1    NNAY01000002    OXU32288.1    GDRN01084090    JAI61556.1    AXCN02000375    APCN01004263    GFXV01008089    MBW19894.1    AAAB01008960    EAA11830.5    ABLF02034746    GGMR01008019    MBY20638.1    AAKN02052340    QRBI01000121    RMC05764.1    MRZV01000410    PIK50654.1   

Proteomes

UP000007151    UP000005204    UP000078542    UP000078540    UP000005205    UP000078492    + More
UP000007755    UP000076502    UP000069940    UP000249989    UP000075885    UP000076408    UP000075881    UP000075883    UP000075900    UP000030765    UP000075903    UP000215335    UP000075920    UP000075902    UP000075886    UP000076407    UP000075882    UP000075840    UP000007062    UP000002358    UP000007819    UP000005447    UP000248481    UP000233200    UP000002280    UP000269221    UP000230750   

PRIDE

H9J9L7   

Pfam

PF12862   ANAPC5        + More
PF18386   ROQ_II

Interpro

IPR026000   Apc5_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR037679   Apc5       
IPR041523   ROQ_II       
IPR036855   Znf_CCCH_sf       
IPR001841   Znf_RING       
IPR000571   Znf_CCCH       
IPR017907   Znf_RING_CS       
IPR013083   Znf_RING/FYVE/PHD       
IPR019734   TPR_repeat       

SUPFAM

SSF48452   SSF48452        + More
SSF90229   SSF90229       

Gene 3D

1.25.40.10     3.30.40.10    

ProteinModelPortal

A0A212ETZ8   H9J9L7   A0A151I9B3   A0A0C9R7U2   A0A195AZ33   A0A158NYD2   + More
A0A151IUC7   F4WSZ0   E9JD27   A0A154PLE9   A0A182H8Z9   A0A182PHG8   A0A182Y146   A0A182JPY6   A0A336M354   A0A182MKT3   A0A182RMI5   A0A084WKN8   A0A182VNY4   A0A232FPB2   A0A182WKG2   A0A182TJR2   A0A0P4W616   A0A182R195   A0A182X509   A0A182LJA7   A0A182HLV6   A0A2H8U052   Q7PNP4   K7IW14   J9JXZ2   A0A2S2NUA0   A0A286XDF2   A0A2Y9HYE7   A0A2K6PPR5   F7ALY9   A0A3M0K3G6   A0A2G8KRN2  

PDB

5LCW     E-value=9.08221e-46,     Score=465

KEGG

101740509    K03352 anaphase-promoting complex subunit 5 | (RefSeq) anaphase-promoting complex subunit 5

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0005680   GO:0046872   GO:0016021   GO:0061630   GO:0031145   GO:0045842   GO:0070979   GO:0019903  

PANTHER

PTHR12830  

Length:

751

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.25753

Exp number, first 60 AAs:

0.0062

Total prob of N-in:

0.00116

outside

1  -  751

 

 

Pi

196.130432

Theta

157.22612

Tajima's D

0.140589

CLR

0.555732

CSRT

0.406729663516824

Interpretation

Uncertain