Gene

KWMTBOMO01917

Pre Gene Modal

BGIBMGA005936

Annotation

PREDICTED:_2'?5'-phosphodiesterase_12_[Amyelois_transitella]

Location

Bomo_Chr4(-):8048845-8056973      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.22

CDS

ATGAGTGATGAAAATATACAGTGGGAGTTTATATGTGAAAACTTCTCCTATATTCCTACATTGAATGACATTGGAATGAAGCTTAAAGTGCAATGCATTCCAGGAAATGAAGTTACTTCAGGCCCTGCTGTTGATGCAATATCCAAAGGTGTTGTGGAAGCAGGTCCCGGCAAATGTCCTTTTGAAACAAGGCACATGTTTACAACCTCTGTTCTCAAAGGCAAAAGTTTTCGCTGTGTTTCTTATAATATTTTAGCTGATTTATATTGCGATTCTGAATTCACAAGGACTGTGCTTCATCCTTATTGCCCGCCATATGCTCTTAATATAGATTATAGAAAACAATTATTAATGAAAGAATTACTAGGATACAATGCTGATATAATATGTCTTCAAGAAGTAGATAGAAAAATATTTCAACATTGGTTGTCTCCCTTTCTTGACAATGCTGGATTTAAGGGACAGTTTTACAGAAAAGGAAAAGAGGTTGCAGAAGGACTTGCTTGTTTTTATAGATCATTAAGGTTTAGGTTCTTAGGGGAAGAACAAATAATCTTATCAGAAGCAATTAAAACTTATCCATGCTTACAGAATATATGGAATATCATAAAGACCAATGGTCCACTTGTAGAACGACTTTTAGACAGATCTACAGTAGCTAGTGTTACATTATTGGAGTCTGTAGAAAATTCGGACGAACTGCTACTTGTTGGAAATACACATTTGTATTTCCACCCCGATGCTGATCACATAAGACTTATTCAAGGTGGCATTTTTATTTATTGGATAAACGATGTTAGGAAAAAAATTATGGAAAAGTTTCCCGATAAAAAAATTAGCTTGATTTTGTGCGGCGATTATAACAGTGTACCAACTTGCGGAATATACCAATTGTATACAACAGGAATAGCACCAAGTACATTGCCAGATTGGAAATCCAATGAGACCGAAAGTGTACAAGGTTTGAATCTGGAGCAGGATATCTTACTGGCCAGTGCATGTGGTACACCAACATACACAAATTTTACTGCTGAATTTGCTGATTGTTTGGATTATATATTTTACGACACATCCAGTTTAGAGGTTGAACAGGTAATTCCGTTCCCGAGTATAGATGAGTTAAAAGCCAACGTTGCCTTACCAAGTGTTGTTTTTCCATCGGACCACATAGCTTTAATATCAGATTTACGATTCAAATGA

Protein

MSDENIQWEFICENFSYIPTLNDIGMKLKVQCIPGNEVTSGPAVDAISKGVVEAGPGKCPFETRHMFTTSVLKGKSFRCVSYNILADLYCDSEFTRTVLHPYCPPYALNIDYRKQLLMKELLGYNADIICLQEVDRKIFQHWLSPFLDNAGFKGQFYRKGKEVAEGLACFYRSLRFRFLGEEQIILSEAIKTYPCLQNIWNIIKTNGPLVERLLDRSTVASVTLLESVENSDELLLVGNTHLYFHPDADHIRLIQGGIFIYWINDVRKKIMEKFPDKKISLILCGDYNSVPTCGIYQLYTTGIAPSTLPDWKSNETESVQGLNLEQDILLASACGTPTYTNFTAEFADCLDYIFYDTSSLEVEQVIPFPSIDELKANVALPSVVFPSDHIALISDLRFK

Uniprot

H9J8U4   A0A2W1BV32   A0A2A4K4H9   A0A194RBI0   A0A194PRV7   A0A212ETZ2   + More
A0A0L7LLW4   A0A2H1VJ14   N6UD15   D6WJI3   A0A067QJY3   A0A1W4WGE4   A0A1I8N4Y1   A0A158P3P0   A0A1Y1K9A4   E9IK67   A0A336LEE4   E2ACV1   A0A195BY22   F4X151   A0A195CSZ5   A0A0L0BUV2   A0A1I8PS33   A0A195F1B8   A0A1A9WA61   A0A0K8TKM9   A0A026WF76   A0A151XG65   A0A1B6D1I8   A0A0A1WP40   A0A0K8UKA8   A0A2J7QF48   A0A0K8W382   A0A1B6L0R0   T1HYV8   A0A0K8UCB7   A0A0K8W490   A0A1B0C8X0   A0A151JPP6   A0A034WC48   A0A1B6K4P8   A0A1A9XXZ6   U4U2M8   W8CD91   D3TNH5   A0A1B0G5S0   B0XJI2   E2C449   A0A1B0BX14   A0A1A9Z8J2   A0A182GSR5   E9HCR1   A0A182PDF4   A0A1Z5LH20   A0A0P6IV41   Q0IFM1   A0A182FIP8   A0A1S4F8I6   A0A0P5U0X6   A0A182IU26   A0A023FBF2   A0A0V0G8W2   A0A0P5XL80   A0A2R5LMC1   A0A084VNV8   A0A1Q3F6I5   A0A2M3ZA89   A0A182WGX1   A0A0P6FWI0   A0A1Q3F6L4   A0A2M3ZA64   A0A1Q3F6S4   A0A2M3Z9Z6   A0A0P5YDC0   Q7PW62   A0A0P5WTZ4   A0A182YFG9   A0A182KUS4   A0A182X2Y5   A0A182TYZ8   A0A069DUP6   A0A2M4AJ57   A0A1S4H0V0   A0A224XP01   A0A182V6S5   A0A2C9GRW1   A0A0P6GFQ5   A0A182K3Q0   A0A2M4CRN5   A0A2M4CRH8   A0A0N8DE82   A0A2M4BII6   A0A1B6FFQ0   A0A182R9S1   A0A1J1HMZ7   A0A182ML47   A0A293MPY6   A0A0P4Z8I7   A0A0P5TSA3   A0A0P8XFX8  

Pubmed

19121390    28756777    26354079    22118469    26227816    23537049    + More
18362917    19820115    24845553    25315136    21347285    28004739    21282665    20798317    21719571    26108605    26369729    24508170    30249741    25830018    25348373    24495485    20353571    26483478    21292972    28528879    26999592    17510324    25474469    24438588    12364791    25244985    20966253    26334808    17994087    18057021   

EMBL

BABH01005048    BABH01005049    KZ149895    PZC78829.1    NWSH01000193    PCG78560.1    + More
KQ460398    KPJ15188.1    KQ459601    KPI93870.1    AGBW02012530    OWR44927.1    JTDY01000698    KOB76176.1    ODYU01002642    SOQ40412.1    APGK01028352    KB740686    ENN79560.1    KQ971342    EFA03899.1    KK853378    KDR08025.1    ADTU01008307    GEZM01091241    JAV56998.1    GL763924    EFZ19036.1    UFQS01004139    UFQT01004139    SSX16206.1    SSX35532.1    GL438582    EFN68749.1    KQ976394    KYM93195.1    GL888526    EGI59818.1    KQ977304    KYN03823.1    JRES01001295    KNC23845.1    KQ981880    KYN33962.1    GDAI01002915    JAI14688.1    KK107250    QOIP01000002    EZA54336.1    RLU25525.1    KQ982174    KYQ59366.1    GEDC01017863    JAS19435.1    GBXI01014099    GBXI01005346    JAD00193.1    JAD08946.1    GDHF01025167    JAI27147.1    NEVH01015302    PNF27206.1    GDHF01006785    JAI45529.1    GEBQ01022695    JAT17282.1    ACPB03017078    GDHF01028007    JAI24307.1    GDHF01006276    JAI46038.1    AJWK01001553    KQ978781    KYN28485.1    GAKP01007579    JAC51373.1    GECU01001289    JAT06418.1    KB631930    ERL87317.1    GAMC01002356    JAC04200.1    EZ422977    ADD19253.1    CCAG010015749    CCAG010015750    DS233522    EDS30409.1    GL452396    EFN77278.1    JXJN01022027    JXUM01085309    KQ563494    KXJ73751.1    GL732621    EFX70391.1    GFJQ02000291    JAW06679.1    GDUN01000329    JAN95590.1    CH477312    EAT43882.1    GDIP01119338    JAL84376.1    GBBI01000022    JAC18690.1    GECL01001747    JAP04377.1    GDIP01070403    JAM33312.1    GGLE01006452    MBY10578.1    ATLV01014931    KE524996    KFB39652.1    GFDL01011864    JAV23181.1    GGFM01004695    MBW25446.1    GDIQ01041810    JAN52927.1    GFDL01011853    JAV23192.1    GGFM01004577    MBW25328.1    GFDL01011867    JAV23178.1    GGFM01004549    MBW25300.1    GDIP01059296    LRGB01000446    JAM44419.1    KZS19075.1    AAAB01008984    EAA15055.3    GDIP01081786    JAM21929.1    GBGD01001492    JAC87397.1    GGFK01007495    MBW40816.1    GFTR01006256    JAW10170.1    APCN01003737    GDIQ01053863    JAN40874.1    GGFL01003757    MBW67935.1    GGFL01003756    MBW67934.1    GDIP01042391    JAM61324.1    GGFJ01003630    MBW52771.1    GECZ01020752    JAS49017.1    CVRI01000004    CRK87609.1    AXCM01001875    GFWV01023000    MAA47727.1    GDIP01216274    JAJ07128.1    GDIP01127681    JAL76033.1    CH902620    KPU73813.1    KPU73814.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000019118    UP000007266    UP000027135    UP000192223    UP000095301    UP000005205    UP000000311    UP000078540    UP000007755    UP000078542    UP000037069    UP000095300    UP000078541    UP000091820    UP000053097    UP000279307    UP000075809    UP000235965    UP000015103    UP000092461    UP000078492    UP000092443    UP000030742    UP000092444    UP000002320    UP000008237    UP000092460    UP000092445    UP000069940    UP000249989    UP000000305    UP000075885    UP000008820    UP000069272    UP000075880    UP000030765    UP000075920    UP000076858    UP000007062    UP000076408    UP000075882    UP000076407    UP000075902    UP000075903    UP000075840    UP000075881    UP000075900    UP000183832    UP000075883    UP000007801   

PRIDE

H9J8U4   

Pfam

PF03372   Exo_endo_phos        + More
PF03911   Sec61_beta
PF00027   cNMP_binding
PF00069   Pkinase
PF01956   EMC3_TMCO1

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR016482   SecG/Sec61-beta/Sbh       
IPR000595   cNMP-bd_dom       
IPR000961   AGC-kinase_C       
IPR000719   Prot_kinase_dom       
IPR035014   STKc_cGK       
IPR014710   RmlC-like_jellyroll       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR018490   cNMP-bd-like       
IPR017441   Protein_kinase_ATP_BS       
IPR002809   EMC3/TMCO1       

SUPFAM

SSF56219   SSF56219        + More
SSF51206   SSF51206       
SSF56112   SSF56112       

Gene 3D

3.60.10.10     2.60.120.10    

CDD

cd05572  STKc_cGK
cd00038  CAP_ED

ProteinModelPortal

H9J8U4   A0A2W1BV32   A0A2A4K4H9   A0A194RBI0   A0A194PRV7   A0A212ETZ2   + More
A0A0L7LLW4   A0A2H1VJ14   N6UD15   D6WJI3   A0A067QJY3   A0A1W4WGE4   A0A1I8N4Y1   A0A158P3P0   A0A1Y1K9A4   E9IK67   A0A336LEE4   E2ACV1   A0A195BY22   F4X151   A0A195CSZ5   A0A0L0BUV2   A0A1I8PS33   A0A195F1B8   A0A1A9WA61   A0A0K8TKM9   A0A026WF76   A0A151XG65   A0A1B6D1I8   A0A0A1WP40   A0A0K8UKA8   A0A2J7QF48   A0A0K8W382   A0A1B6L0R0   T1HYV8   A0A0K8UCB7   A0A0K8W490   A0A1B0C8X0   A0A151JPP6   A0A034WC48   A0A1B6K4P8   A0A1A9XXZ6   U4U2M8   W8CD91   D3TNH5   A0A1B0G5S0   B0XJI2   E2C449   A0A1B0BX14   A0A1A9Z8J2   A0A182GSR5   E9HCR1   A0A182PDF4   A0A1Z5LH20   A0A0P6IV41   Q0IFM1   A0A182FIP8   A0A1S4F8I6   A0A0P5U0X6   A0A182IU26   A0A023FBF2   A0A0V0G8W2   A0A0P5XL80   A0A2R5LMC1   A0A084VNV8   A0A1Q3F6I5   A0A2M3ZA89   A0A182WGX1   A0A0P6FWI0   A0A1Q3F6L4   A0A2M3ZA64   A0A1Q3F6S4   A0A2M3Z9Z6   A0A0P5YDC0   Q7PW62   A0A0P5WTZ4   A0A182YFG9   A0A182KUS4   A0A182X2Y5   A0A182TYZ8   A0A069DUP6   A0A2M4AJ57   A0A1S4H0V0   A0A224XP01   A0A182V6S5   A0A2C9GRW1   A0A0P6GFQ5   A0A182K3Q0   A0A2M4CRN5   A0A2M4CRH8   A0A0N8DE82   A0A2M4BII6   A0A1B6FFQ0   A0A182R9S1   A0A1J1HMZ7   A0A182ML47   A0A293MPY6   A0A0P4Z8I7   A0A0P5TSA3   A0A0P8XFX8  

PDB

4Z0V     E-value=3.45672e-93,     Score=872

KEGG

101740104    K19612 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] | (RefSeq) 2',5'-phosphodiesterase 12

GO

GO:0016021   GO:0000288   GO:0000175   GO:0005739   GO:0004692   GO:0005524  

Length:

399

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01504

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00760

outside

1  -  399

 

 

Pi

242.376585

Theta

157.084323

Tajima's D

-1.025196

CLR

0.437134

CSRT

0.130143492825359

Interpretation

Uncertain