Gene

KWMTBOMO01914  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006208

Annotation

PREDICTED:_RNA-binding_protein_39_[Papilio_polytes]

Location

Bomo_Chr4(+):8013494-8020986      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.292

CDS

ATGGCGGAAGATTTTGATGTTGAGGCAATGTTAGAAGCTCCATATAATAAATCGGATAACACTTCCTCATCAAAGCATCGATCGGACAAGCACTCAGATAAGCACAAAGAAAGGGATAAAGATGGTTCAAGAAGGCGTAGTCGATCGAGAGATAAAAGAAGATCAAGGGATAAGGATTCACGTCGTTCAAGAGATCGAGACGATAAAAAAGACAGAGAAAGAGGCAGAGACAGAGATCGTCGAGATCGCGACAAAGATCGGATTAAGGATAAAGACCGCGAGAGAGAAAGAGAACGAGATAAAGAAAAACGTCGTAGCCGCGACAAGGACCGAAGTCGGGAAAGAGATCGCAGTCGCGATAAAAACGTTCATAAAAAAGAAAAAACTCCTGAAAGAGAACCACAAAAAGAATATAGGTCAAAGTCGAGGGGGCTAGACCCGAAACTTGAAGATCTACCTCCAGAAGAAAGAGATCTAAGAACTGTATTTTGCATGCAATTGTCGCAAAGAATCCGTGCTAAAGATTTAGAAGAATTTTTCTCATCAGTTGGCAAGGTTCGAGACGTAAGACTTATTACTTGCAATAAAACAAGAAGATTCAAAGGTATTGCATATATTGAATTCAAAGATGCTGAATCAGTGCCTTTGGCTCTTGGCTTAACAGGACAAAAGTTACTTGGAGTTCCTATAATTGTACAGCACACGCAAGCCGAAAAAAATAGGGTTGGCAATACATTGCCGAATTTAGCACCAAAGACCAGTAATGGACCTACTAGACTCTATGTTGGGTCTTTACATTTTAATATTACAGAGGATATGCTACGTGGCATTTTTGAACCATTCGGAAAAATTGATCACATTCAACTAATGACTGATCCAGAAACTGGTAAAAGTAAAGGATATGGATTTCTCACTTTCCACCATGCCAGTGATGCTAAGAAGGCTATGGAACAGTTAAATGGTTTTGAGTTAGCTGGGCGGCCTATGAAAGTTGGAAACGTCACAGAACGTGCAGATGGAGGATCAAGCACGCGGTTTGATGCTGATGAGTTGGATCGAGCTGGAATTGACCTTGGTGCCACGGGCCGTTTACAATTAATGTTTAAATTAGCAGAGGGAACAGGCTTACAAATACCTCCTGCAGCAGCATCAGTACTAATGGGGAGTGGTTCAGCTTTAGTGTCTCCGCAACCTCAAGTTGCACCTCCTATTGCAACACAATGCTTCATGCTCAATAACATGTTTGATCCAGCAACGGAAACAAATCCAAGTTGGGATATTGAAATAAGGGATGATGTTATCAGTGAATGCAACAAACACGGTGGAGTGTTGCATGTGTATGTTGATAAAGCATCGCCTCAGGGAAATGTGTACTGCAAGTGTCCGACAATAGCGACGGCCGTTGCCTCCGTGAACAGTTTGCACGGAAGATGGTTTGCGGGTCGTGTTATTACGGCGGCGTATGTACCGCTCGTCAATTATCATTCTTTATTCCCGGACGCGATGACTGCACTCAGCTTACTATTGCCTTCGAGGCAGCGATAG

Protein

MAEDFDVEAMLEAPYNKSDNTSSSKHRSDKHSDKHKERDKDGSRRRSRSRDKRRSRDKDSRRSRDRDDKKDRERGRDRDRRDRDKDRIKDKDRERERERDKEKRRSRDKDRSRERDRSRDKNVHKKEKTPEREPQKEYRSKSRGLDPKLEDLPPEERDLRTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRLITCNKTRRFKGIAYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGSSTRFDADELDRAGIDLGATGRLQLMFKLAEGTGLQIPPAAASVLMGSGSALVSPQPQVAPPIATQCFMLNNMFDPATETNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGNVYCKCPTIATAVASVNSLHGRWFAGRVITAAYVPLVNYHSLFPDAMTALSLLLPSRQR

Uniprot

H9J9L5   A0A2A4K3S6   A0A2W1BUS7   A0A2H1WHL4   A0A194PLJ8   A0A194RGY3   + More
A0A212ETV9   A0A0L7LSI4   A0A2J7R0F3   A0A0K8T0Y2   A0A0K8T8Z7   A0A1W4X3F2   A0A0N7Z915   T1HXL9   A0A1S4EFA0   A0A3Q0IZ48   N6U3V4   D6WLZ9   A0A0T6BB65   A0A069DU20   A0A1Y1M1J5   A0A1Y1LZK6   A0A154PRG0   A0A0J7KN76   A0A310SIX9   E2C448   E2ACV0   A0A026WGX8   A0A195CUK8   A0A151JP25   F4X152   A0A195BZ42   A0A195F0G1   A0A158P3P2   A0A087ZVF7   A0A0C9QWU2   A0A151XG88   A0A0N0BKB9   A0A0C9RGZ9   A0A1B6MNS3   A0A1B6LBP5   E0VR69   A0A0L0C7T0   A0A0K8TLP1   A0A0K8VQV4   A0A034WIX8   A0A1A9WXG2   A0A0A1WXC4   A0A1L8DFE9   A0A1B0FEY8   T1PGA1   A0A1A9Z413   W8BUP4   A0A1B0BVM3   A0A0L7QS78   A0A1A9XMK5   B0X5Y4   A0A182QYA1   A0A1Q3F788   A0A1Q3F7L1   A0A1Q3F797   B0XJP6   A0A1Q3F7F0   Q17B91   A0A084VM93   A0A182VJI7   A0A182JBV7   A0A182L0E0   A0A182RRQ0   A0A1S4GYY7   A0A182TN11   A0A2C9GNI9   A0A182NUV4   U5EWK0   Q7PN29   A0A182KCI9   A0A182XFT4   A0A023ETK7   A0A2S2QPG9   J9JQ40   A0A336LJK2   A0A182WHD7   A0A182PAQ6   A0A182IC17   A0A2S2P5L6   A0A1I8PK21   A0A1I8PJW5   A0A1I8PJT8   A0A182NES8   A0A182Y9Z6   B4JPE9  

Pubmed

19121390    28756777    26354079    22118469    26227816    27129103    + More
23537049    18362917    19820115    26334808    28004739    20798317    24508170    30249741    21719571    21347285    20566863    26108605    26369729    25348373    25830018    25315136    24495485    17510324    24438588    20966253    12364791    24945155    25244985    17994087   

EMBL

BABH01005042    NWSH01000193    PCG78554.1    KZ149895    PZC78832.1    ODYU01008632    + More
SOQ52382.1    KQ459601    KPI93873.1    KQ460398    KPJ15191.1    AGBW02012530    OWR44930.1    JTDY01000181    KOB78417.1    NEVH01008240    PNF34319.1    GBRD01006624    JAG59197.1    GBRD01003925    JAG61896.1    GDKW01001811    JAI54784.1    ACPB03010247    ACPB03010248    APGK01040756    KB740984    KB631904    ENN76275.1    ERL87102.1    KQ971343    EFA04195.1    LJIG01002607    KRT84333.1    GBGD01001281    JAC87608.1    GEZM01044078    JAV78520.1    GEZM01044077    JAV78521.1    KQ435007    KZC13700.1    LBMM01005229    KMQ91686.1    KQ762207    OAD56040.1    GL452396    EFN77277.1    GL438582    EFN68748.1    KK107250    QOIP01000002    EZA54334.1    RLU25526.1    KQ977304    KYN03824.1    KQ978781    KYN28486.1    GL888526    EGI59819.1    KQ976394    KYM93196.1    KQ981880    KYN33963.1    ADTU01008308    GBYB01005142    JAG74909.1    KQ982174    KYQ59367.1    KQ435701    KOX80381.1    GBYB01007595    JAG77362.1    GEBQ01002425    JAT37552.1    GEBQ01018872    JAT21105.1    DS235459    EEB15875.1    JRES01000794    KNC28312.1    GDAI01002326    JAI15277.1    GDHF01016259    GDHF01011053    JAI36055.1    JAI41261.1    GAKP01005249    JAC53703.1    GBXI01014378    GBXI01011122    JAC99913.1    JAD03170.1    GFDF01008913    JAV05171.1    CCAG010000397    KA647791    AFP62420.1    GAMC01005892    GAMC01005890    JAC00664.1    JXJN01021375    KQ414766    KOC61394.1    DS232397    EDS41115.1    AXCN02000840    GFDL01011614    JAV23431.1    GFDL01011499    JAV23546.1    GFDL01011613    JAV23432.1    DS233573    EDS30585.1    GFDL01011555    JAV23490.1    CH477324    EAT43555.1    ATLV01014582    KE524975    KFB39087.1    AAAB01008964    APCN01000772    GANO01001381    JAB58490.1    EAA12873.4    GAPW01000945    JAC12653.1    GGMS01010217    MBY79420.1    ABLF02036759    UFQT01000016    SSX17815.1    GGMR01012162    MBY24781.1    CH916372    EDV98779.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000235965    UP000192223    UP000015103    UP000079169    UP000019118    UP000030742    UP000007266    UP000076502    UP000036403    UP000008237    UP000000311    UP000053097    UP000279307    UP000078542    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000005203    UP000075809    UP000053105    UP000009046    UP000037069    UP000091820    UP000092444    UP000095301    UP000092445    UP000092460    UP000053825    UP000092443    UP000002320    UP000075886    UP000008820    UP000030765    UP000075903    UP000075880    UP000075882    UP000075900    UP000075902    UP000075840    UP000075884    UP000007062    UP000075881    UP000076407    UP000007819    UP000075920    UP000075885    UP000095300    UP000076408    UP000001070   

PRIDE

H9J9L5   

Pfam

PF15519   RBM39linker        + More
PF00076   RRM_1
PF01218   Coprogen_oxidas

Interpro

IPR029123   RBM39_linker        + More
IPR035979   RBD_domain_sf       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR006509   RBM39_SF       
IPR003954   RRM_dom_euk       
IPR036406   Coprogen_oxidase_aer_sf       
IPR001260   Coprogen_oxidase_aer       
IPR018375   Coprogen_oxidase_CS       

SUPFAM

SSF54928   SSF54928        + More
SSF102886   SSF102886       

Gene 3D

3.30.70.330     3.40.1500.10    

ProteinModelPortal

H9J9L5   A0A2A4K3S6   A0A2W1BUS7   A0A2H1WHL4   A0A194PLJ8   A0A194RGY3   + More
A0A212ETV9   A0A0L7LSI4   A0A2J7R0F3   A0A0K8T0Y2   A0A0K8T8Z7   A0A1W4X3F2   A0A0N7Z915   T1HXL9   A0A1S4EFA0   A0A3Q0IZ48   N6U3V4   D6WLZ9   A0A0T6BB65   A0A069DU20   A0A1Y1M1J5   A0A1Y1LZK6   A0A154PRG0   A0A0J7KN76   A0A310SIX9   E2C448   E2ACV0   A0A026WGX8   A0A195CUK8   A0A151JP25   F4X152   A0A195BZ42   A0A195F0G1   A0A158P3P2   A0A087ZVF7   A0A0C9QWU2   A0A151XG88   A0A0N0BKB9   A0A0C9RGZ9   A0A1B6MNS3   A0A1B6LBP5   E0VR69   A0A0L0C7T0   A0A0K8TLP1   A0A0K8VQV4   A0A034WIX8   A0A1A9WXG2   A0A0A1WXC4   A0A1L8DFE9   A0A1B0FEY8   T1PGA1   A0A1A9Z413   W8BUP4   A0A1B0BVM3   A0A0L7QS78   A0A1A9XMK5   B0X5Y4   A0A182QYA1   A0A1Q3F788   A0A1Q3F7L1   A0A1Q3F797   B0XJP6   A0A1Q3F7F0   Q17B91   A0A084VM93   A0A182VJI7   A0A182JBV7   A0A182L0E0   A0A182RRQ0   A0A1S4GYY7   A0A182TN11   A0A2C9GNI9   A0A182NUV4   U5EWK0   Q7PN29   A0A182KCI9   A0A182XFT4   A0A023ETK7   A0A2S2QPG9   J9JQ40   A0A336LJK2   A0A182WHD7   A0A182PAQ6   A0A182IC17   A0A2S2P5L6   A0A1I8PK21   A0A1I8PJW5   A0A1I8PJT8   A0A182NES8   A0A182Y9Z6   B4JPE9  

PDB

5CXT     E-value=7.16659e-44,     Score=447

KEGG

101739548    K13091 RNA-binding protein 39 | (RefSeq) RNA-binding protein 39

GO

GO:0006397   GO:0003723   GO:0005634   GO:1990446   GO:0010494   GO:0003729   GO:1990904   GO:0061158   GO:0004109   GO:0006779   GO:0000381   GO:0000166   GO:0003676   GO:0043401   GO:0003677   GO:0003707   GO:0004651  

Length:

514

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.66834

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00186

outside

1  -  514

 

 

Pi

271.045846

Theta

224.787113

Tajima's D

0.665667

CLR

0.081938

CSRT

0.567171641417929

Interpretation

Uncertain