Gene

KWMTBOMO01913

Pre Gene Modal

BGIBMGA005939

Annotation

PREDICTED:_protein_CWC15_homolog_[Amyelois_transitella]

Location

Bomo_Chr4(-):8008163-8011913      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.32

CDS

ATGACTACAGCTGCTAGACCCACTTTTGATCCTGCAAGAGGTGGTCAAGGCCGAGGAGAGAAAGACTTAAGTGCTATTTCTCGACAGTATTCCAGCAGAGATCTTCCTGGTCATACGAAACTTAAATACAGGGAATCAGGTCAAGGGACATCTGAGGAATTACGCTCTCGTGATTTTCGTAAGGAGTTGGATGATAGAGAAAAAGATGTTAAAACTACGACTACAAAACGTACAAGTGAACCACAAGCAAAAAGAACTAAGGTTGATCAAGTTCCTGCAGCAAGTCTTGATGCTGATGATCCTCTTGAAGGCGATTCCACTGACTCTGATGATTCAGATGATGATACTGCTGCATTGCTAGCAGAATTAAACAGAATTAAGAAGGAAAGGGCCATTGAACAAGCTAAAAAAGAAGCTGAAAAGAAACAAGAAGAGGAAAGAATTAGAATGGAGAACATATTATCGGGTAATCCTTTACTCAACTACTCCGCTGCAGGACAGAAGAATGACATGAAGGTAAAAAGAAGATGGGATGATGACGTTGTTTTCAAAAATTGCGCTCGTTCTGAACCGGAAAAGAAACCTAATACTTTTATAAATGACTCATTAAGATCAGAGTTCCATAAGAAATTTATGGAAAAGTACGTGAAATAG

Protein

MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLEGDSTDSDDSDDDTAALLAELNRIKKERAIEQAKKEAEKKQEEERIRMENILSGNPLLNYSAAGQKNDMKVKRRWDDDVVFKNCARSEPEKKPNTFINDSLRSEFHKKFMEKYVK

Uniprot

H9J8U7   S4PGQ3   I4DK76   A0A2A4K472   A0A194PMB2   A0A2W1C3U1   + More
A0A2H1WH32   A0A194RC63   A0A1E1W6A5   A0A1B6KM95   A0A1B6ILB3   A0A1B6DHL9   A0A151IU84   E9IW92   A0A151WK65   F4X2S5   A0A195FUT8   A0A195BK71   A0A158NLQ8   A0A2J7RPU9   A0A0T6AVY5   A0A336LZ95   A0A0L7RJS8   J3JVP1   A0A067QML2   A0A1Y1JZX3   E2A4X3   D6WLQ5   A0A182MN53   A0A182WCV9   A0A1B0CEC6   A0A1W4XG79   A0A182VN33   A0A182RKZ5   A0A182X1T1   A0A182HFP6   N6U6H1   A0A182P8F5   A0A182LQ46   A0A182YA51   Q7Q8S0   E0VF84   A0A182UG25   A0A182K0Z5   A0A2J7PHQ9   A0A1L8DI21   A0A182Q6D1   A0A1L8DHR5   A0A0K8TS41   A0A154NX33   A0A182MYF3   A0A3Q0IR36   B0X3C5   E2BSG7   A0A088AQN6   A0A2A3EJ22   A0A0A1XH93   A0A084WI43   A0A0C9R931   A0A2M4ASM7   A0A182GJZ0   A0A023EKJ9   A0A0V0GAH7   A0A182JA59   B4L8E8   A0A1I8N703   A0A2M4ATZ0   B4NE11   A0A069DQN2   A0A0P4VY75   R4G5B2   A0A026W3Z3   W5J3P1   A0A023EKM9   B4M223   A0A232F982   K7J3C3   Q16GR1   A0A1I8PVF1   A0A2R5LH50   A0A293N5K7   U5EXL8   A0A1Q3F6Z6   B3N084   A0A1Q3F619   A0A034WEW0   A0A0K8U7I0   A0A1D2NJI9   W8BUH1   A0A1A9WPL5   A0A0A9XX87   T1IZQ4   T1PJI1   A0A2R7W5C5   B4JIQ1   A0A1A9VIK6   A0A1A9ZRI4   D3TR29   A0A1A9XC40   A0A310SD13  

Pubmed

19121390    23622113    22651552    26354079    28756777    21282665    + More
21719571    21347285    22516182    24845553    28004739    20798317    18362917    19820115    23537049    20966253    25244985    12364791    14747013    17210077    20566863    26369729    25830018    24438588    26483478    24945155    17994087    25315136    26334808    27129103    24508170    20920257    23761445    28648823    20075255    17510324    25348373    27289101    24495485    25401762    26823975    20353571   

EMBL

BABH01005042    GAIX01003557    JAA89003.1    AK401694    BAM18316.1    NWSH01000193    + More
PCG78553.1    KQ459601    KPI93874.1    KZ149895    PZC78833.1    ODYU01008632    SOQ52381.1    KQ460398    KPJ15192.1    GDQN01008532    JAT82522.1    GEBQ01027984    GEBQ01027399    JAT11993.1    JAT12578.1    GECU01020004    JAS87702.1    GEDC01012183    JAS25115.1    KQ980968    KYN10952.1    GL766458    EFZ15164.1    KQ983020    KYQ48200.1    GL888591    EGI59271.1    KQ981219    KYN44415.1    KQ976450    KYM85665.1    ADTU01019667    NEVH01001355    PNF42853.1    LJIG01022716    KRT79083.1    UFQT01000332    SSX23314.1    KQ414578    KOC71207.1    BT127309    AEE62271.1    KK853149    KDR10683.1    GEZM01098647    JAV53811.1    GL436756    EFN71515.1    KQ971343    EFA03421.1    AXCM01000500    AJWK01008734    APCN01005563    APGK01040727    KB740984    KB631904    ENN76251.1    ERL87080.1    AAAB01008933    EAA09924.4    DS235107    EEB12040.1    NEVH01025133    PNF15870.1    GFDF01008074    JAV06010.1    AXCN02001048    GFDF01008075    JAV06009.1    GDAI01000858    JAI16745.1    KQ434777    KZC04245.1    DS232312    EDS39817.1    GL450233    EFN81355.1    KZ288253    PBC31021.1    GBXI01003533    JAD10759.1    ATLV01023913    KE525347    KFB49887.1    GBYB01009367    JAG79134.1    GGFK01010463    MBW43784.1    JXUM01068905    KQ562524    KXJ75706.1    GAPW01003923    JAC09675.1    GECL01000953    JAP05171.1    CH933815    EDW07923.1    GGFK01010916    MBW44237.1    CH964239    EDW81980.1    GBGD01002883    JAC86006.1    GDKW01001020    JAI55575.1    ACPB03006700    GAHY01000685    JAA76825.1    KK107499    EZA49764.1    ADMH02002188    ETN57918.1    GAPW01003877    JAC09721.1    CH940651    EDW65727.1    NNAY01000679    OXU27018.1    CH478243    EAT33432.1    GGLE01004724    MBY08850.1    GFWV01022741    MAA47468.1    GANO01000890    JAB58981.1    GFDL01011787    JAV23258.1    CH902640    EDV38288.1    GFDL01012043    JAV23002.1    GAKP01006096    GAKP01006095    JAC52857.1    GDHF01029776    GDHF01014952    GDHF01012267    JAI22538.1    JAI37362.1    JAI40047.1    LJIJ01000023    ODN05448.1    GAMC01001575    JAC04981.1    GBHO01019603    GBRD01012231    GDHC01018646    JAG24001.1    JAG53593.1    JAP99982.1    JH431723    KA648083    AFP62712.1    KK854344    PTY14882.1    CH916370    EDW00498.1    CCAG010019315    EZ423881    ADD20157.1    KQ769580    OAD52856.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000078492    UP000075809    + More
UP000007755    UP000078541    UP000078540    UP000005205    UP000235965    UP000053825    UP000027135    UP000000311    UP000007266    UP000075883    UP000075920    UP000092461    UP000192223    UP000075903    UP000075900    UP000076407    UP000075840    UP000019118    UP000030742    UP000075885    UP000075882    UP000076408    UP000007062    UP000009046    UP000075902    UP000075881    UP000075886    UP000076502    UP000075884    UP000079169    UP000002320    UP000008237    UP000005203    UP000242457    UP000030765    UP000069940    UP000249989    UP000075880    UP000009192    UP000095301    UP000007798    UP000015103    UP000053097    UP000000673    UP000008792    UP000215335    UP000002358    UP000008820    UP000095300    UP000007801    UP000094527    UP000091820    UP000001070    UP000078200    UP000092445    UP000092444    UP000092443   

PRIDE

H9J8U7   

Pfam

PF04889   Cwf_Cwc_15

Interpro

IPR006973   Cwf_Cwc_15       

ProteinModelPortal

H9J8U7   S4PGQ3   I4DK76   A0A2A4K472   A0A194PMB2   A0A2W1C3U1   + More
A0A2H1WH32   A0A194RC63   A0A1E1W6A5   A0A1B6KM95   A0A1B6ILB3   A0A1B6DHL9   A0A151IU84   E9IW92   A0A151WK65   F4X2S5   A0A195FUT8   A0A195BK71   A0A158NLQ8   A0A2J7RPU9   A0A0T6AVY5   A0A336LZ95   A0A0L7RJS8   J3JVP1   A0A067QML2   A0A1Y1JZX3   E2A4X3   D6WLQ5   A0A182MN53   A0A182WCV9   A0A1B0CEC6   A0A1W4XG79   A0A182VN33   A0A182RKZ5   A0A182X1T1   A0A182HFP6   N6U6H1   A0A182P8F5   A0A182LQ46   A0A182YA51   Q7Q8S0   E0VF84   A0A182UG25   A0A182K0Z5   A0A2J7PHQ9   A0A1L8DI21   A0A182Q6D1   A0A1L8DHR5   A0A0K8TS41   A0A154NX33   A0A182MYF3   A0A3Q0IR36   B0X3C5   E2BSG7   A0A088AQN6   A0A2A3EJ22   A0A0A1XH93   A0A084WI43   A0A0C9R931   A0A2M4ASM7   A0A182GJZ0   A0A023EKJ9   A0A0V0GAH7   A0A182JA59   B4L8E8   A0A1I8N703   A0A2M4ATZ0   B4NE11   A0A069DQN2   A0A0P4VY75   R4G5B2   A0A026W3Z3   W5J3P1   A0A023EKM9   B4M223   A0A232F982   K7J3C3   Q16GR1   A0A1I8PVF1   A0A2R5LH50   A0A293N5K7   U5EXL8   A0A1Q3F6Z6   B3N084   A0A1Q3F619   A0A034WEW0   A0A0K8U7I0   A0A1D2NJI9   W8BUH1   A0A1A9WPL5   A0A0A9XX87   T1IZQ4   T1PJI1   A0A2R7W5C5   B4JIQ1   A0A1A9VIK6   A0A1A9ZRI4   D3TR29   A0A1A9XC40   A0A310SD13  

PDB

6QDV     E-value=2.74147e-42,     Score=429

KEGG

101739416    K12863 protein CWC15 | (RefSeq) protein CWC15 homolog

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000398   GO:0005681   GO:0071013   GO:0003723   GO:0045292   GO:0015074   GO:0008026   GO:0043401   GO:0003677   GO:0003707   GO:0004651   GO:0005634  

PANTHER

PTHR12718  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20226

outside

1  -  217

 

 

Pi

245.547344

Theta

165.348725

Tajima's D

-1.417112

CLR

0.283261

CSRT

0.0715464226788661

Interpretation

Uncertain