Gene

KWMTBOMO01898

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Diaphorina_citri]

Location

Bomo_Chr4(-):7604462-7605738      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.603 Mitochondrial   Reliability : 1.194

CDS

ATGAAAGTTTGGGAGAAAGTGATAGAAAAGCGATTGCGAGATGAAAGTGAGATCACCCAAAACCAGTTCGGGTTCATGCCTGGTCGCGGGACAACGGACGCCATATTTGCACTCCGCCAAGTGTGCGAAAAACATCGCGACGTGCACAGGAATCTGCATATGGTGTTCGTTGATCTAGAGAAAGCGTACGACCGAGTACCTAGAGCAGTTTTGTGGTGGGCATTGAATGAGAAAGGTATACCTGGTAAGTATGTGAGGTTAATCTGTGCCATGTACAGTCGAGCCAGGACGTATGTACGAACCGCCGCGGGGAATTCCGACGAGTTCAATGTGGCAGTGGGCTTACACCAAGGGTCTGCACTAAGTCCCTATCTCTTCCTGCTTGTGATGGATGCCTTGACATCGGAGATACAGGAAGAGCCCCCTTGGTGTATGCTGTTTGCCGATGACATAGTGCTCGTCGGAGAAAACGGGCTCGAGGTCCAAAACATACTGGAGAAATGGCGATGCAAGTTGGAGAGTGTTGGCCTAAAAATCAGCAGATCGAAAACCGAACATCTGTTCTGTGATTTTGGCGGTCTCTCCAATTTTACACCCATTTCCCTCGACGGAACACCTTTGCCAGTATGTCAAGACTTCCGATACCTAGGGTCTGTTATCCAAAGCGACGGTGAACTGGATCGTACTGTCAGGCACAGAATTGACGCAGGATGGATGAAATGGCGGCAGGTCACGGGCACCATATGTGACTCGCACATCCCTCTTCCCCTAAAAGGGAAGATATATAAGACCTTAATAAGGCCTGCCGTCTTGTATGGATCAGCGTGTTGGACAACGAAAGTGGCGGATGAAAGGCGATTGCACGCAGCAGAGATGCGAATGTTGCGATGGATGTGTGGAGTAACGAGAATGGATAGAATACGGAATTAA

Protein

MKVWEKVIEKRLRDESEITQNQFGFMPGRGTTDAIFALRQVCEKHRDVHRNLHMVFVDLEKAYDRVPRAVLWWALNEKGIPGKYVRLICAMYSRARTYVRTAAGNSDEFNVAVGLHQGSALSPYLFLLVMDALTSEIQEEPPWCMLFADDIVLVGENGLEVQNILEKWRCKLESVGLKISRSKTEHLFCDFGGLSNFTPISLDGTPLPVCQDFRYLGSVIQSDGELDRTVRHRIDAGWMKWRQVTGTICDSHIPLPLKGKIYKTLIRPAVLYGSACWTTKVADERRLHAAEMRMLRWMCGVTRMDRIRN

Similarity

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.

Uniprot

A0A2A4IZ11   A0A1D6FKM1   A0A1D6GGM1   A0A1D6L213   A0A1D6FKL2   A0A1D6FKL0   + More
A0A1D6JF34   A0A1D6G0V4   A0A1D6Q028   A0A1D6IMH2   A0A317Y9W4   A0A1D6LAQ1   A0A1D6FKM0   A0A3L6E1R1   A0A1D6FKK2   A0A3L6DEY6   A0A3L6FLU6   A0A1D6K060   A0A1D6H1V1   A0A3L6RK86   A0A1D6JIM9   A0A3L6R6D2   A0A1D6KX85   A0A317Y223   A0A1D6MK44   A0A151QVZ1   A0A1D6GGM3   A0A1D6P0V1   A0A1D6M7A6   A0A1D6KG90   A0A1D6I601   A0A1D6H871   A0A1D6MYV7   A0A1D6PU65   A0A1D6J5H5   A0A1D6HX90   A0A1D6NCE0   A0A1D6JJN9   A0A1D6LXZ4   A0A1D6FJU8   A0A317Y8S7   A0A1D6FKJ6   A0A3L6FHK1   A0A1D6KLY6   A0A1D6KVT7   A0A1D6JQ10   A0A1D6K3M7   A0A1D6I7A1   A0A1D6LC02   A0A1D6I351   A0A3L6EF28   A0A1D6LFI2   A0A1D6G503   A0A1D6MV72   A0A1D6KWI6   A0A1D6I607   A0A1D6LGC8   A0A287U3N1   A0A3L6EGE5   A0A317YB76   A0A1D6GRX4   A0A3L6G913   A0A1D6HE72   A0A1D6H3S2   A0A3L6GA57   A0A317YFX6   A0A1D6H3M4   A0A1J6I9S5   A0A2G3ANN0   A0A2G2XRV4   M1BPI1   A0A0V0IX54   A0A1U8F5T2   A0A2I0WG66   A0A1U8GZ26   A0A2I0VMH1   A0A2G2VBM6   A0A3P9JDN6   A0A251RQ99   A0A3B3HQB6   A0A2G2VN18   A0A2I0WUN7   Q1AKH8   A0A3P9IJG8   A0A3B3H8Q9   A0A3B3HJS0   A0A3P9JAC7   A0A2G2X5G8   G0Y6T3   A0A3P9HQ45   A0A3P9I3Z4   H3AU15   A0A3P9K727   A0A2I0A9T6   A0A3P9MDZ4   A0A3B3H692   A0A3P9IYW4   A0A3P9H8W7   A0A3B3HQW9  

Pubmed

19965430    30061735    30683860    22057054    23075845    29089032    + More
21743474    24591624    26754549    28902843    17554307    28538728    16699558    21707619    9215903   

EMBL

NWSH01004369    PCG65177.1    CM000784    AQK92256.1    CM000781    AQK62700.1    + More
CM007647    ONM08550.1    AQK92235.1    AQK92238.1    CM000786    AQK46390.1    AQK97087.1    CM000780    AQK52011.1    CM007650    ONM60488.1    NCVQ01000001    PWZ55478.1    ONM11203.1    AQK92237.1    NCVQ01000008    PWZ14448.1    AQK92248.1    NCVQ01000010    PWZ06717.1    NCVQ01000004    PWZ33800.1    ONL97201.1    AQK68857.1    PQIB02000008    RLN04959.1    AQK47447.1    PQIB02000009    RLM97850.1    ONM07070.1    PWZ52216.1    CM007649    ONM29620.1    KQ484600    KYP34423.1    AQK62698.1    CM000785    AQL03708.1    CM000782    AQK86945.1    ONM02098.1    ONM55518.1    AQK70926.1    ONM33873.1    AQK50169.1    AQK43188.1    ONM52836.1    ONM38170.1    ONL92524.1    AQK84025.1    AQK92036.1    PWZ54893.1    AQK92253.1    PWZ32579.1    ONM03863.1    ONM06616.1    AQK59578.1    ONL94081.1    ONM09892.1    ONM36701.1    AQK53188.1    ONL98233.1    ONM55942.1    ONM11626.1    ONM54584.1    NCVQ01000007    PWZ18651.1    AQK78701.1    AQK98364.1    ONM32720.1    ONM06831.1    ONM55524.1    AQK78972.1    NCVQ01000006    PWZ20114.1    PWZ54982.1    AQK65817.1    NCVQ01000002    PWZ44991.1    AQK72949.1    AQK69475.1    PWZ45158.1    PWZ57036.1    AQK69444.1    MJEQ01037188    OIT01734.1    AYRZ02000001    PHT95842.1    MLFT02000001    PHT60200.1    GEDG01001285    JAP37101.1    KZ502668    PKU74657.1    KZ503407    PKU64612.1    MLFT02000036    PHT30395.1    CM007906    OTF86477.1    MLFT02000011    PHT34353.1    KZ502442    PKU79361.1    DQ070849    ABB00038.1    MLFT02000003    PHT52732.1    HQ637177    AEL30343.1    AFYH01127925    KZ452008    PKA52309.1   

Proteomes

UP000218220    UP000007305    UP000251960    UP000275267    UP000075243    UP000011116    + More
UP000187609    UP000222542    UP000224567    UP000011115    UP000189700    UP000233837    UP000265200    UP000215914    UP000001038    UP000008672    UP000265180    UP000236161   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF00083   Sugar_tr
PF05608   DUF778
PF01300   Sua5_yciO_yrdC
PF14529   Exo_endo_phos_2
PF08555   DUF1754
PF04937   DUF659
PF11894   Nup192
PF04147   Nop14
PF08711   Med26
PF12807   eIF3_p135
PF07727   RVT_2
PF08263   LRRNT_2
PF13855   LRR_8
PF00227   Proteasome
PF02213   GYF
PF12783   Sec7_N
PF09324   DUF1981
PF16213   DCB
PF01369   Sec7
PF16206   Mon2_C

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR005828   MFS_sugar_transport-like       
IPR003663   Sugar/inositol_transpt       
IPR005829   Sugar_transporter_CS       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR008496   TMEM222/RTE1       
IPR017945   DHBP_synth_RibB-like_a/b_dom       
IPR006070   YrdC-like_dom       
IPR036882   Alba-like_dom_sf       
IPR027124   Swc5/CFDP2       
IPR013865   FAM32A       
IPR007021   DUF659       
IPR012337   RNaseH-like_sf       
IPR021827   Nup186/Nup192/Nup205       
IPR007276   Nop14       
IPR035441   TFIIS/LEDGF_dom_sf       
IPR017923   TFIIS_N       
IPR033646   CLU-central       
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR013103   RVT_2       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR013210   LRR_N_plant-typ       
IPR032675   LRR_dom_sf       
IPR011009   Kinase-like_dom_sf       
IPR017441   Protein_kinase_ATP_BS       
IPR029055   Ntn_hydrolases_N       
IPR001353   Proteasome_sua/b       
IPR003169   GYF       
IPR035445   GYF-like_dom_sf       
IPR032629   DCB_dom       
IPR015403   Sec7_C       
IPR000904   Sec7_dom       
IPR032817   Mon2_C       
IPR016024   ARM-type_fold       
IPR032691   Sec7_N       
IPR023394   Sec7_C_sf       
IPR035999   Sec7_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF103473   SSF103473       
SSF55821   SSF55821       
SSF82704   SSF82704       
SSF53098   SSF53098       
SSF48452   SSF48452       
SSF56112   SSF56112       
SSF56235   SSF56235       
SSF55277   SSF55277       
SSF48371   SSF48371       
SSF48425   SSF48425       

Gene 3D

3.60.10.10     1.20.930.10     1.25.40.10     3.80.10.10     3.60.20.10     3.30.1490.40     1.10.1000.11    

CDD

cd06174  MFS
cd15466  CLU-central
cd00072  GYF
cd00171  Sec7

ProteinModelPortal

A0A2A4IZ11   A0A1D6FKM1   A0A1D6GGM1   A0A1D6L213   A0A1D6FKL2   A0A1D6FKL0   + More
A0A1D6JF34   A0A1D6G0V4   A0A1D6Q028   A0A1D6IMH2   A0A317Y9W4   A0A1D6LAQ1   A0A1D6FKM0   A0A3L6E1R1   A0A1D6FKK2   A0A3L6DEY6   A0A3L6FLU6   A0A1D6K060   A0A1D6H1V1   A0A3L6RK86   A0A1D6JIM9   A0A3L6R6D2   A0A1D6KX85   A0A317Y223   A0A1D6MK44   A0A151QVZ1   A0A1D6GGM3   A0A1D6P0V1   A0A1D6M7A6   A0A1D6KG90   A0A1D6I601   A0A1D6H871   A0A1D6MYV7   A0A1D6PU65   A0A1D6J5H5   A0A1D6HX90   A0A1D6NCE0   A0A1D6JJN9   A0A1D6LXZ4   A0A1D6FJU8   A0A317Y8S7   A0A1D6FKJ6   A0A3L6FHK1   A0A1D6KLY6   A0A1D6KVT7   A0A1D6JQ10   A0A1D6K3M7   A0A1D6I7A1   A0A1D6LC02   A0A1D6I351   A0A3L6EF28   A0A1D6LFI2   A0A1D6G503   A0A1D6MV72   A0A1D6KWI6   A0A1D6I607   A0A1D6LGC8   A0A287U3N1   A0A3L6EGE5   A0A317YB76   A0A1D6GRX4   A0A3L6G913   A0A1D6HE72   A0A1D6H3S2   A0A3L6GA57   A0A317YFX6   A0A1D6H3M4   A0A1J6I9S5   A0A2G3ANN0   A0A2G2XRV4   M1BPI1   A0A0V0IX54   A0A1U8F5T2   A0A2I0WG66   A0A1U8GZ26   A0A2I0VMH1   A0A2G2VBM6   A0A3P9JDN6   A0A251RQ99   A0A3B3HQB6   A0A2G2VN18   A0A2I0WUN7   Q1AKH8   A0A3P9IJG8   A0A3B3H8Q9   A0A3B3HJS0   A0A3P9JAC7   A0A2G2X5G8   G0Y6T3   A0A3P9HQ45   A0A3P9I3Z4   H3AU15   A0A3P9K727   A0A2I0A9T6   A0A3P9MDZ4   A0A3B3H692   A0A3P9IYW4   A0A3P9H8W7   A0A3B3HQW9  

PDB

6AR3     E-value=6.98005e-05,     Score=109

KEGG

105842369    no KO assigned | (RefSeq) uncharacterized LOC105842369

GO

GO:0016021   GO:0022857   GO:0005351   GO:0005887   GO:0003725   GO:0003676   GO:0003887   GO:0005643   GO:0006999   GO:0044611   GO:0017056   GO:0032040   GO:0005634   GO:0000943   GO:0005524   GO:0051603   GO:0004298   GO:0005839   GO:0003964   GO:0005086   GO:0032012   GO:0016787  

PANTHER

PTHR23227   PTHR31344:SF0   PTHR23183  

Subcellular location

Nucleus  

Length:

309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06904

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.15270

outside

1  -  309

 

 

Pi

52.850589

Theta

32.635864

Tajima's D

1.409275

CLR

0.93927

CSRT

0.773711314434278

Interpretation

Uncertain