Gene

KWMTBOMO01897  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006201

Annotation

PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX33_[Bombyx_mori]

Location

Bomo_Chr4(+):7523999-7533953      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.784 Nuclear   Reliability : 1.188

CDS

ATGGATTCAAAGTACTGCTCAATAGGTTTGACCAATGAAACTAAAAATGGTTTTAAGAGGAAGAAACCGACAGCTAGTATTTGTGTGAAAAAGGTCAAATTATTAAGTGATAGTATTAGTAATTGTTTACAAAATGGCCATGAAGTTTCTAAAAACATAGAAACGCATGTTGTTAAAAAAAATTCAGATGATTTGCAAGAAGCTAGAAGGAAACTGCCTGTATTTATGGTTAGAGGCAGGTTATTAGAAGAAATAAGAAAAAACAACACAATGATAATAATAGGTGAGACAGGAAGTGGTAAGACCACTCAGATTCCTCAAATGATTCATGAACAGAGATTAGAAGGCACTGGCTCGATAGCAGTTACTCAGCCTCGTAGAGTAGCTGCTATTACAATTGCATTGCGAGTTGCTGCTGAAATGAATACTGAAGTTGGTAACATTGTTGGGTACTCAGTTAGATTTGAAGATGTGACAAGCCCTAGAACTAAAGTGAAATATTTAACTGATGGTATGTTGCTTAGAGAAGCTATCTTAGATCCTTTGCTCAGTAAATATTCAGTTATTATTCTGGATGAAGCACATGAACGCACTGTGAGCACTGATATATTGTTTGGAATTGTGAAATTAGCACAAAAGGAGAGAAATGAAAAAACTATTAATCCTTTAAAGGTCATTGTAATGTCAGCGACAATGGATGTCGATACATTTAGAAATTATTTTGACAGCTGTCCAGTAATATATTTGGAAGGTCGTACACATCCTGTGACAATATATCATTCTAAAACCAAGCAAGAGGATTACCAGTATGCAGCTGTGTGCACAATATTTCAGCTGCACACTACTACCCCTGCTGATGATGACTTTCTTGTATTTCTAACTGGGCAAGAAGAGATTGAAGCTGTAATGTATAACATAAAACAAATCGCGAAAGAAACAACAGGTCCACCTATACGGGTTTGTCCATTATACGCCGGCCTTCCGCCTGCACAGCAAATGCAGGTGTGGAAAGAGACACCGCCGGGTACCAGGAAAATAGTCCTCGCGACTAATATAGCAGAGGCATCGGTCACGATTCCCAGGATAAAGTGTGTCATTGATACTGGTGTTGTAAAAGAAAGGTCGTGGTGTAGTGCCACAGGTGCGGAGCGGCTGGTGGTGCGCAGCGGGTCGCAGGCGGCGGGCTGGCAGCGCGCCGGCCGCGCGGGCCGCACCGCGCCCGGCGCCGCCTACAGGCTCTATACCGCGCAGCAGTTCAACACAAGACCCTTACATCCTACGCCTGAAATACTTAGATGTCCACTGGCACCAACAATACTGTTGCTAATAGCAGCCGGCGTTGAACCGAGCACATTCCCGCTGATAGACTCTCCACCGCGAGACTCCGTCACTGCTTCATTGACGTTACTTAAGGAATTGGGTGCAATTGACAGCGTAGAAATTCCAAAATTAACCGTATTAGGTCGCAAAATGTCTTCATTCCCGATAGATCCCAAATATTCGAAAGTACTACTGAGTGCCCCCGAATATGGATGCTTAGAAGAGGCTTTAAGTTTAGTAGCAGTTTTGTCTAGTGAAAATATATTCTACACGCCGATGCACAAACGCGAAGAAGCATTGAAAGTAAAGCGAAAATTTATATCGCCAACAGGAGACCACATCACCTTGTTAAATGTTTTTAAAGCATTTTGCAAAGCTACTTTAAAAAAGCAATGGTGTAAAGAAAACTATTTAAATCATCGAAATTTAACGTACGCTTACGAAGTCCGACAGCAGTTACTTGCAATATGTCAGAGATTAAATTTAACTCTATCAAGCTGCGGGTCTGCAACTGATCAGTTGCTGAAGTGTTTGTTGAGCGGCTTATTCAGCAACTGTGCGTGGTCTCGGAGCGCGGGCGTGGCGGGGGGCGGGGCGCGGTACGTGACGGGCGCGGGGGGCGCCGCCAGCCTGCACCCCGCCGCCGCGCTGCACGCCGCCAGCCCGCCCCCCCCCGCGCTGCTCTACACAGAGCTGCTGCACACCCGCCGCACGTACATGATCACCGTCTCCGCCATACAACCGCACTGGCTCCAACAGGTGGCGCCCGATTACGCACGCAGATGTCGGGCTTACCGATGA

Protein

MDSKYCSIGLTNETKNGFKRKKPTASICVKKVKLLSDSISNCLQNGHEVSKNIETHVVKKNSDDLQEARRKLPVFMVRGRLLEEIRKNNTMIIIGETGSGKTTQIPQMIHEQRLEGTGSIAVTQPRRVAAITIALRVAAEMNTEVGNIVGYSVRFEDVTSPRTKVKYLTDGMLLREAILDPLLSKYSVIILDEAHERTVSTDILFGIVKLAQKERNEKTINPLKVIVMSATMDVDTFRNYFDSCPVIYLEGRTHPVTIYHSKTKQEDYQYAAVCTIFQLHTTTPADDDFLVFLTGQEEIEAVMYNIKQIAKETTGPPIRVCPLYAGLPPAQQMQVWKETPPGTRKIVLATNIAEASVTIPRIKCVIDTGVVKERSWCSATGAERLVVRSGSQAAGWQRAGRAGRTAPGAAYRLYTAQQFNTRPLHPTPEILRCPLAPTILLLIAAGVEPSTFPLIDSPPRDSVTASLTLLKELGAIDSVEIPKLTVLGRKMSSFPIDPKYSKVLLSAPEYGCLEEALSLVAVLSSENIFYTPMHKREEALKVKRKFISPTGDHITLLNVFKAFCKATLKKQWCKENYLNHRNLTYAYEVRQQLLAICQRLNLTLSSCGSATDQLLKCLLSGLFSNCAWSRSAGVAGGGARYVTGAGGAASLHPAAALHAASPPPPALLYTELLHTRRTYMITVSAIQPHWLQQVAPDYARRCRAYR

Uniprot

A0A2H1X0X4   A0A212F0Q2   A0A194R1W1   A0A194PLK8   A0A2P8Y1A3   A0A2J7QBM3   + More
A0A1B6DZY5   A0A1Y1LTH7   A0A067QN56   E0VC35   D6WNY8   A0A0L7RJV6   A0A1W4WM56   A0A0T6AUJ5   A0A088ATG0   A0A2A3EIW3   A0A1I8MIV4   T1PJ55   N6U2C2   E9GDG1   A0A210Q5A0   A0A195E5N1   F4WP55   A0A026WP55   A0A336MTZ8   A0A0P6ACA7   A0A195B9X2   A0A0C9RDX1   A0A0P6IEX8   A0A195EV48   A0A158NG95   A0A151WMK2   A0A1S3J0N4   W8BBC9   A0A1B0FAS2   A0A0A1X7T3   A0A1L8DGA4   A0A023F2T0   A0A0K8UK92   A0A336MR68   A0A0L0CFP5   A0A151IKT8   A0A1I8NZ77   A0A0A9XAK1   E2A3J9   A0A3B4V1Q6   G3QA12   A0A1L8HGB0   A0A0F8AC25   A0A3P8YYU2   A0A3P8VV43   A0A3B4H2R9   A0A3B3UN32   A0A1S3RN32   A0A2C9JCC8   M3ZU18   A0A0P7V4B5   A0A146NSV0   A0A3B3YKI5   A0A1W4ZAC5   I3KLQ1   H2S6D3   A0A3P8R7H9   A0A3P8R8Q6   A0A3P9D957   A0A087XV01   A0A3B5AGQ2   K7INF0   A0A2U9B9K2   W5L917   A0A3B5L277   A0A2D0QCM4   W5U8G7   A0A3B4AK23   A0A1A9Y702   A0A3P9NRE8   A0A093QIZ5   X1WET4   H2M8J1   F7CJ74   F7CUD1   B1H3C5   A0A182JPN6   A0A3B4E948   A0A2G8KKM0   U5ET14   Q6GL98   A0A0M4EA88   H0Z1C0   A0A1A7Y0P4   A0A182V5S1   A0A182ULL7   B4M9K0   A0A369SQ53   A0A2I4DCN7   A0A182KNZ5   A0A182I1D9   A0A3B3TCG1   H9GLX8  

Pubmed

22118469    26354079    29403074    28004739    24845553    20566863    + More
18362917    19820115    25315136    23537049    21292972    28812685    21719571    24508170    30249741    21347285    24495485    25830018    25474469    26108605    25401762    20798317    27762356    25835551    25069045    24487278    15562597    23542700    25186727    21551351    20075255    25329095    23127152    25463417    23594743    17554307    20431018    29023486    20360741    17994087    18057021    30042472    20966253    29240929    21881562   

EMBL

ODYU01012586    SOQ58995.1    AGBW02011047    OWR47310.1    KQ460870    KPJ11773.1    + More
KQ459601    KPI93883.1    PYGN01001054    PSN38038.1    NEVH01016296    PNF25969.1    GEDC01006077    JAS31221.1    GEZM01048895    JAV76301.1    KK853138    KDR10772.1    DS235045    EEB10941.1    KQ971343    EFA03189.1    KQ414578    KOC71150.1    LJIG01022848    KRT78407.1    KZ288253    PBC30961.1    KA648719    AFP63348.1    APGK01045200    APGK01045201    APGK01045202    APGK01045203    KB741031    ENN74771.1    GL732540    EFX82076.1    NEDP02004983    OWF43914.1    KQ979608    KYN20396.1    GL888243    EGI63986.1    KK107139    QOIP01000003    EZA57800.1    RLU24693.1    UFQT01002065    SSX32569.1    GDIP01031344    JAM72371.1    KQ976542    KYM81030.1    GBYB01011282    JAG81049.1    GDIQ01007081    JAN87656.1    KQ981965    KYN31767.1    ADTU01015078    ADTU01015079    KQ982944    KYQ48935.1    GAMC01008020    JAB98535.1    CCAG010015740    GBXI01007326    JAD06966.1    GFDF01008667    JAV05417.1    GBBI01003214    JAC15498.1    GDHF01025584    JAI26730.1    SSX32570.1    JRES01000453    KNC31065.1    KQ977164    KYN05222.1    GBHO01025847    JAG17757.1    GL436444    EFN71981.1    CM004468    OCT95132.1    KQ042784    KKF10644.1    JARO02004955    KPP67604.1    GCES01151787    JAQ34535.1    AERX01048964    AYCK01007202    CP026246    AWP00442.1    JT408184    AHH38261.1    KL672574    KFW86370.1    CT573103    AAMC01010900    BC161345    AAI61345.1    MRZV01000516    PIK48549.1    GANO01002973    JAB56898.1    BC074605    AAH74605.1    CP012523    ALC40215.1    ABQF01026134    HADW01017903    HADX01001659    SBP23891.1    CH940654    EDW57876.1    KRF77997.1    NOWV01000002    RDD47573.1    APCN01000054    AAWZ02026898    AAWZ02026899    AAWZ02026900    AAWZ02026901    AAWZ02026902   

Proteomes

UP000007151    UP000053240    UP000053268    UP000245037    UP000235965    UP000027135    + More
UP000009046    UP000007266    UP000053825    UP000192223    UP000005203    UP000242457    UP000095301    UP000019118    UP000000305    UP000242188    UP000078492    UP000007755    UP000053097    UP000279307    UP000078540    UP000078541    UP000005205    UP000075809    UP000085678    UP000092444    UP000037069    UP000078542    UP000095300    UP000000311    UP000261420    UP000007635    UP000186698    UP000265140    UP000265120    UP000261460    UP000261500    UP000087266    UP000076420    UP000002852    UP000034805    UP000261480    UP000192224    UP000005207    UP000005226    UP000265100    UP000265160    UP000028760    UP000261400    UP000002358    UP000246464    UP000018467    UP000261380    UP000221080    UP000261520    UP000092443    UP000242638    UP000053258    UP000000437    UP000001038    UP000008143    UP000075881    UP000261440    UP000230750    UP000092553    UP000007754    UP000075903    UP000075902    UP000008792    UP000253843    UP000192220    UP000075882    UP000075840    UP000261540    UP000001646   

Pfam

PF04408   HA2        + More
PF00271   Helicase_C
PF07717   OB_NTP_bind
PF00270   DEAD

Interpro

IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd       
IPR011709   DUF1605       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR007502   Helicase-assoc_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR027417   P-loop_NTPase       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A2H1X0X4   A0A212F0Q2   A0A194R1W1   A0A194PLK8   A0A2P8Y1A3   A0A2J7QBM3   + More
A0A1B6DZY5   A0A1Y1LTH7   A0A067QN56   E0VC35   D6WNY8   A0A0L7RJV6   A0A1W4WM56   A0A0T6AUJ5   A0A088ATG0   A0A2A3EIW3   A0A1I8MIV4   T1PJ55   N6U2C2   E9GDG1   A0A210Q5A0   A0A195E5N1   F4WP55   A0A026WP55   A0A336MTZ8   A0A0P6ACA7   A0A195B9X2   A0A0C9RDX1   A0A0P6IEX8   A0A195EV48   A0A158NG95   A0A151WMK2   A0A1S3J0N4   W8BBC9   A0A1B0FAS2   A0A0A1X7T3   A0A1L8DGA4   A0A023F2T0   A0A0K8UK92   A0A336MR68   A0A0L0CFP5   A0A151IKT8   A0A1I8NZ77   A0A0A9XAK1   E2A3J9   A0A3B4V1Q6   G3QA12   A0A1L8HGB0   A0A0F8AC25   A0A3P8YYU2   A0A3P8VV43   A0A3B4H2R9   A0A3B3UN32   A0A1S3RN32   A0A2C9JCC8   M3ZU18   A0A0P7V4B5   A0A146NSV0   A0A3B3YKI5   A0A1W4ZAC5   I3KLQ1   H2S6D3   A0A3P8R7H9   A0A3P8R8Q6   A0A3P9D957   A0A087XV01   A0A3B5AGQ2   K7INF0   A0A2U9B9K2   W5L917   A0A3B5L277   A0A2D0QCM4   W5U8G7   A0A3B4AK23   A0A1A9Y702   A0A3P9NRE8   A0A093QIZ5   X1WET4   H2M8J1   F7CJ74   F7CUD1   B1H3C5   A0A182JPN6   A0A3B4E948   A0A2G8KKM0   U5ET14   Q6GL98   A0A0M4EA88   H0Z1C0   A0A1A7Y0P4   A0A182V5S1   A0A182ULL7   B4M9K0   A0A369SQ53   A0A2I4DCN7   A0A182KNZ5   A0A182I1D9   A0A3B3TCG1   H9GLX8  

PDB

6I3P     E-value=4.87917e-125,     Score=1149

KEGG

101744134    K17820 ATP-dependent RNA helicase DHX33 [EC:3.6.4.13] | (RefSeq) putative ATP-dependent RNA helicase

GO

GO:0004386   GO:0005524   GO:0003676   GO:0005730   GO:0034459   GO:0003723   GO:0045943   GO:0006356   GO:0016787   GO:0033613   GO:0003725   GO:0032481   GO:0043410   GO:0005654   GO:0006413   GO:0043023   GO:0000182   GO:1900227   GO:0051092   GO:0003729   GO:0072559   GO:0008026   GO:0043401   GO:0003677   GO:0003707   GO:0004651   GO:0005634  

Length:

706

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03209

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00059

outside

1  -  706

 

 

Pi

272.871837

Theta

203.460477

Tajima's D

1.484614

CLR

0.265598

CSRT

0.784010799460027

Interpretation

Possibly Positive selection