Silkworm Genome Informatics Database

Gene

KWMTBOMO01894

Pre Gene Modal

BGIBMGA005944

Annotation

PREDICTED:_serine/threonine-protein_phosphatase_1_regulatory_subunit_10-like_isoform_X2_[Papilio_machaon]

Location

Bomo_Chr4(-):7480840-7496028 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.963

CDS

ATGTCCAGCATAGAACCAAAACAACTTCTTGGGTGCCTTAGTGGACTTCTTTCTAATAATGGTGGCATTAAACGCAGAAACGAAGTCCAAAGGATTGCACGTCTTATGTCTAAATATTCTAAGAAATTAGTATCTAAATGTATCTACATACAAATTCTGAAGTGTACAGAAACTGAACTATTGGATTTGTTCATGAGGTATAATGGATGGCTTTTAATTCACTTATGGTTAACAGAAAGCATAGTAGCAAAAAACTGGCCTCTTGTGAAAGAATTACTGGAGTTATTGTTGTTGTGTCCTGTCGACTTAAATCGACTTAAAACTAATAATTGTCCAAAACTCGTTAAAGAATTATCTAAGGATGGAGATCACTTTGCTATTAGAGCACTGGCTTCAAAACTGGTTGAGCAATGGTTAAAAACTGTACAAGGAGAAAAAGTAGTTCCTGTTTTACTGTCTGATATTCCTCAGATAATTAGTGATGGCAACGGTGAAATAAAACCGGAGATAGTTAAACTAAAATCTGAGGTAGAACAAGCAAAAGATACTGCAGAAAATGAAGAGAGTACTGTTAAAACTGTTAAAACTGAGGAATGCTGCAAGAGTGAAAGTATAGAAATAACGCCCACAGTTAAGGAAGAAAACCAAGAACCTTCCAAAACTGAAATCAAAATAGAAACAGACCAACAACTTGAGACTTTGCCTGTCCTTAAAATTAGTTTAAAAGATGGTGTTCAAACAGTGTTGAAAGTTGAAGATACTGAAAACAAAGATTTGAAAGAATCCCCAACCAGTGAAAAGTTGAAAGAAAACTCCAAAAATAAAGATAAAGATAAATCGAGTGAGAAAACCAAAAGTAGTCACACGAAATCAAATAGTTCGAAACATTCGAGTAAAGCACGTTCTTCGAGTGATAAACATAAGAGTAGCAGCAGCTCTAGTCGACACAGTAGTAGCAAGGACAAGAAAAAAGATAAGGATAAGGATAGAAGTTCTCATAGTTCTAAATCTAAAAGTGATAGTAGTAAGAAATCATCCAGTAGTAGTAGTAGTAGTAATAGTAGTAGTAGTAGTAAAACAAAAGATGATCGTAGCACTAAAAATTCTGAAAAAGAGAAAAGAGAGAAAGATGAGAAACTTGGTAAGAAAAAAGATAAAGACACAAAAGAAAAATCGGATGAAAGTAATGAACATAAGACACCTTCAATATCGAAGCTAGGAAAAATTCCAAAGCTTAGTGATTTAAAAAAGGAAAAGCCTTCTATATCAATAGAAGTGAGAAAGCCTGACGATCCAAAACCGAAAACTGTAAAAGCTTACAATTCAAAATTTAGGAAACATGGATTGGAGGAGGAGATAAAACCGCCGCCATCGCGCTCTGTACTATTAAATAAAAAAGCACCACCACCACCCATACCTCCCATAGTCTCTATACCGAAAAGACATTCTCCAGTACATAATGAAACACCACCTGAAAAGAAACTTAAAACTATGGAAATAGTAGAAAAACCTGGTTCTATTAAATTAATACCTCCCAAACCAAAACCCATGACACTTTTGGAAAGCGATATGTTTATGGATGCACTCAATGCTTCAGCGACAAATAAGAAGGAACCAAAGAAAAGAAAAAGGCGTACGAGCGGATCGAAGGATGGCAATCCTAATGACGGATCACCTCCACCTACACCGACATCACTCAGTAGTCCCACAAGCGAAAGTAAATCTGTACCGCCAAGGTTTTACCAAGATACTTTGGATGCAGAAGAACGTAAAGACAAAAGTCATGAAAGTAAAGAACCAGTTAGTCCCGTGACCACAGAAAATGAAGTCGAAGACGACAAGATGGACGTTTCTGGGCCGCATACATTAACAGTTAATGGATTAAAAGGGGTTTTATGTTATCATAGAAAAAAAGGTCCCAAAAAGAACATTAAATGGAAACCTGACAGTGAACTAGAAACAATTCATGTATTTGACCTGGATGAGACTGAAAGAATAAATGTCACCAAAACATTCACGGATATGAAATATTTAGAAAGAATACACGAAAGGGAAGCTTTCGAAAAAGCAAGAAACCTTAGTAATGACGACGTTATGGAAGAACGTACAAATTGGAAGCCTTTGATTTTAGTAGATTTAGAAGGACAATTACAAGTAGATTATGGCAAAAACAGTAAAGAGAAAGATATACAGGCACTACGACAAAAAGTAACCTTACAACCTTTATATTTCAACAAGGCAATGATTCCTGATTCCCCAATTGAACCAGAATTAGAAACTCACACCTATTCTGAACCCTCAATAATTCCCTTGGAAGATGTCACTGGAAATCAAGATAATATAAGTGATTTTAGAAATATGCCTTGGCCTGAACCGAGAGGTAATGCTCCACCCCAAACACCGAGTAATATGACTGTTGGTGCTAGTCCATTATTCCCTAACAATCTCACACAATTTTCAAACACTTTTCCTAATACGCAATTTCCTGGAGTACCACCTGCCTTCCAAGGCCCTAACATCGTTCCTGGTGAGTGGCAAAATGGAATACCCCAACAGATGATACCAAATGGAATGCCTGGTCCAATAGGAACCCACAATTTAGCACCAGGTGTGATGCCTCCCGGAAGCCATCCACAAGGTATGATGATTTCACCTGAGACTATGATGATGGCTCCGGAGATGTTCGGAAACCCAACTCCAATGATTCCTGTACCACCGGAAAGTTTCAATATGCAACAGAATATGTATCCGATGGATTTCAACATGGTAGGTCCTCCGGGACCGGGCCCCGAAGGTTTTAATGGCCCTGGCCCTGGTTCTGGTCCCGGACCTGGTAATTTTAGAGGAGCCATGCGTGGTCGCGGTGTCAATGGTCATTGGCGCGGAAAGGGTGCGGGGAACTGGGAAAATCCGTCCAGGGGTGGTAGAGGAGGAGGCCCTCGCGGGAACCGAAAGACAATTTGTATGTATTTTCAAAGGAAGGGATCTTGTCGGCAGGGCGATAATTGTACATTCTTGCATCCAGGTGTGAACTGTCCTTTTTAA

Protein

MSSIEPKQLLGCLSGLLSNNGGIKRRNEVQRIARLMSKYSKKLVSKCIYIQILKCTETELLDLFMRYNGWLLIHLWLTESIVAKNWPLVKELLELLLLCPVDLNRLKTNNCPKLVKELSKDGDHFAIRALASKLVEQWLKTVQGEKVVPVLLSDIPQIISDGNGEIKPEIVKLKSEVEQAKDTAENEESTVKTVKTEECCKSESIEITPTVKEENQEPSKTEIKIETDQQLETLPVLKISLKDGVQTVLKVEDTENKDLKESPTSEKLKENSKNKDKDKSSEKTKSSHTKSNSSKHSSKARSSSDKHKSSSSSSRHSSSKDKKKDKDKDRSSHSSKSKSDSSKKSSSSSSSSNSSSSSKTKDDRSTKNSEKEKREKDEKLGKKKDKDTKEKSDESNEHKTPSISKLGKIPKLSDLKKEKPSISIEVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPPPSRSVLLNKKAPPPPIPPIVSIPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPKPMTLLESDMFMDALNASATNKKEPKKRKRRTSGSKDGNPNDGSPPPTPTSLSSPTSESKSVPPRFYQDTLDAEERKDKSHESKEPVSPVTTENEVEDDKMDVSGPHTLTVNGLKGVLCYHRKKGPKKNIKWKPDSELETIHVFDLDETERINVTKTFTDMKYLERIHEREAFEKARNLSNDDVMEERTNWKPLILVDLEGQLQVDYGKNSKEKDIQALRQKVTLQPLYFNKAMIPDSPIEPELETHTYSEPSIIPLEDVTGNQDNISDFRNMPWPEPRGNAPPQTPSNMTVGASPLFPNNLTQFSNTFPNTQFPGVPPAFQGPNIVPGEWQNGIPQQMIPNGMPGPIGTHNLAPGVMPPGSHPQGMMISPETMMMAPEMFGNPTPMIPVPPESFNMQQNMYPMDFNMVGPPGPGPEGFNGPGPGSGPGPGNFRGAMRGRGVNGHWRGKGAGNWENPSRGGRGGGPRGNRKTICMYFQRKGSCRQGDNCTFLHPGVNCPF

Uniprot

A0A2J7QNI1

EMBL

NEVH01013194 PNF30147.1

Proteomes

UP000235965

Pfam

PF08711 Med26

Interpro

IPR000571   Znf_CCCH        + More
IPR035441   TFIIS/LEDGF_dom_sf
IPR017923   TFIIS_N
IPR036855   Znf_CCCH_sf
IPR003617   TFIIS/CRSP70_N_sub

SUPFAM

SSF90229 SSF90229 + More
SSF47676 SSF47676

Gene 3D

1.20.930.10

ProteinModelPortal

A0A2J7QNI1

KEGG

101738402 K17552 protein phosphatase 1 regulatory subunit 10 | (RefSeq) lisH domain-containing protein C1711.0

GO

GO:0005634 GO:0046872 GO:0005840 GO:0006412 GO:0003723 GO:0043401 GO:0003677 GO:0003707 GO:0004651

Subcellular location

Nucleus

Length:

1014

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02123

Exp number, first 60 AAs:

0.00139

Total prob of N-in:

0.00101

outside

1 - 1014

Pi

256.727023

Theta

204.124551

Tajima's D

0.765656

CLR

0.108598

CSRT

0.590070496475176

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree