Gene

KWMTBOMO01893

Annotation

PREDICTED:_glycerophosphocholine_phosphodiesterase_GPCPD1_isoform_X1_[Papilio_polytes]

Location

Bomo_Chr4(-):7452194-7461588      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.741

CDS

ATGTTGGATACACTTATGTGTTACCAAACATGTTCAAACCCTCAGAAGGTTTCGTATGCCAAGTATTGGGACTCAAGTTGGACAGGGTTAGAAGTGGGACACAGAGGCTTGGGTGCAAGTTTTAAAACAAAAGAAGGAAATGCTATTCGTGAGAATACAATAGCTTCTCTTAAAAAAGCAGCTGCAAGTGGTGCAGATCTGCTAGAGTTTGATGTTCAACTGAGTAAAGATATGATACCAGTTATTTATCATGACTTTTATGTGTGCATATCAATGAAAAGAAAGAAGGAAATTGAATTTACAGAAATGCTTGAATTACCAGTGAAGGACTTGACTTTGGAACACCTACAAAAACTGAAGGTATACCATCTTGTAGAAGGACGAAGTAAAGAAACTTTATTTTTTGATGATGACTTGGACGAGCACCAACCATTTCCGACTTTAGAAGATGCTCTTAAAGCAATAGATATCCATGTTGGATTCAATGTGGAATTAAAATGGACAATGGAAATGAATGATGGCACATTTGAATTAAACAATCCATTTGATATGAACACTTATGTTGATAAGGTGTTGGAAGTGGTACTGAAACATGCTGGTGAACGCCGCATTGTGTTTTCTTGCTTCAATCCAGACATTTGTACTATGGTTAGGAATAAGCAAAACAAATATCCTGTAATGTTTTTGACTGTGGGTATCACTAATAAGTACCAGCCGTACCGGGACCCAAGATGTCTGTCTATCCCGGCGGCCGTACAGAGCGCCGTGAGCTCGGATCTGCTCGGCATCGTCGTGCACACCGAGGATCTGCTCCGTGATCCTACGCAGGTGAAATTAGCGACAGATGCAGGTTTAGTCATATTCTGTTGGGGTGACGACAACAACGACAAAGATACGATCAAGAAATTAAAAGAAATGGGGCTGCACGCTGTGATCTATGATAAATTAGATCAATACATAACCAAAGAAGTCAAGGAGAGCATATTCCTCGTCGAGGCCCGAGAGTCCCAACGAGAAATAATGCGACTGGCGGCGTTTGAAGATTTACATCCACCTGGAAGCTCTTCGTCACTCCAGACAATTGAATCAGAAAACCGACCTTACTTTGATCTCTCTATCCGTGAAAGAATACAACAAAACTCCACAGCTACCTCCCTGGAGTCTCTCGCTTCCTCGATGGACCTAAGAGATGAGGCTCCCGATAAAAATTTAAAAAGAAACCGTGAAATTATATCCGTAATCGACAAGGAAAGTCAAGTCAAAGAACAGCGGATGTCTTTTCAGGGACTGTTCCCGGCTGGAGATAATTCTTTAGGGTTGTCAAAAAAATCCCGCACGATCGAAAACGATCGTAAAGACATGTGA

Protein

MLDTLMCYQTCSNPQKVSYAKYWDSSWTGLEVGHRGLGASFKTKEGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYVCISMKRKKEIEFTEMLELPVKDLTLEHLQKLKVYHLVEGRSKETLFFDDDLDEHQPFPTLEDALKAIDIHVGFNVELKWTMEMNDGTFELNNPFDMNTYVDKVLEVVLKHAGERRIVFSCFNPDICTMVRNKQNKYPVMFLTVGITNKYQPYRDPRCLSIPAAVQSAVSSDLLGIVVHTEDLLRDPTQVKLATDAGLVIFCWGDDNNDKDTIKKLKEMGLHAVIYDKLDQYITKEVKESIFLVEARESQREIMRLAAFEDLHPPGSSSSLQTIESENRPYFDLSIRERIQQNSTATSLESLASSMDLRDEAPDKNLKRNREIISVIDKESQVKEQRMSFQGLFPAGDNSLGLSKKSRTIENDRKDM

Similarity

Belongs to the RNase T2 family.

Uniprot

A0A194R2M2   A0A194PKN3   A0A212F0T5   A0A2W1BZT7   A0A2A4IWP3   A0A0L7KNP5   + More
V9I6V9   A0A1Y1MYM1   V9I831   A0A0J7L703   A0A1Y1N1M3   V9I8L2   V9I8Y4   V9I6X4   A0A3L8DDC4   V9I6V4   A0A0C9PN27   A0A2J7QNK3   E2ACQ6   A0A2J7QNP6   A0A151ILG5   A0A195AVL5   A0A195DNM7   A0A026WB24   A0A0M8ZUI6   A0A195FID5   A0A151WHS5   E9ISB5   B0WPG3   E2BUY4   A0A182J9V2   A0A1W4WEM6   A0A0C9PU55   Q16GK4   D6WL75   A0A182GKE4   A0A084W8U8   A0A232EQZ8   A0A1Q3FYG6   A0A1Q3FYD2   A0A2M4ALH9   A0A023FBW1   A0A0P4VNE4   A0A182TER7   A0A182X341   A0A2M4BGW0   A0A2M4BGX2   A0A2C9GRA4   W5JAD7   A0A069DX70   A0A2M4CHL4   A0A182KFG8   A0A182Q6P8   A0A0V0G5A2   A0A2M4CHN0   A0A224XKF3   A0A182ML41   A0A2M4CHL5   A0A1B0CZE2   V5GPA3   A0A182YDJ8   A0A182KTS7   A0A182NC15   A0A182RBJ8   R4WDJ2   A0A1B6FGJ7   A0A182UWU9   A0A1B0CK74   N6UC22   A0A182SM15   A0A1B6ME86   A0A182WGR8   A0A0K8TR97   A0A182PLN4   A0A158P2K7   A0A1L8DC78   A0A1B6CYF6   A0A0M4EEZ6   A0A1B6HYY1   A0A1B6I264   A0A0A9Y8A0   A0A1B6ETP9   B4JQJ1   B4KJY7   A0A0L7QYZ6   Q8IQ03   W8B5E3   A0A0J9QVD5   E0VJT1   A0A0K8VT18   A0A1A9XV81   B4LRR7   A0A1B0BC83   B3MP63  

Pubmed

26354079    22118469    28756777    26227816    28004739    30249741    + More
20798317    24508170    21282665    17510324    18362917    19820115    26483478    24438588    28648823    25474469    27129103    20920257    23761445    26334808    25244985    20966253    23691247    23537049    26369729    21347285    25401762    26823975    17994087    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24495485    22936249    20566863   

EMBL

KQ460870    KPJ11769.1    KQ459601    KPI93887.1    AGBW02011047    OWR47314.1    + More
KZ149895    PZC78777.1    NWSH01005932    PCG63838.1    JTDY01008214    KOB64676.1    JR035942    AEY56808.1    GEZM01017308    JAV90781.1    JR035941    AEY56807.1    LBMM01000338    KMR00328.1    GEZM01017309    GEZM01017307    JAV90780.1    JR035940    AEY56806.1    JR035938    AEY56804.1    JR035939    AEY56805.1    QOIP01000010    RLU18153.1    JR035937    AEY56803.1    GBYB01002563    GBYB01004875    JAG72330.1    JAG74642.1    NEVH01013194    PNF30159.1    GL438568    EFN68800.1    PNF30163.1    KQ977120    KYN05593.1    KQ976731    KYM76278.1    KQ980724    KYN14099.1    KK107310    EZA52876.1    KQ435840    KOX71415.1    KQ981523    KYN40430.1    KQ983112    KYQ47374.1    GL765324    EFZ16540.1    DS232023    EDS32342.1    GL450772    EFN80521.1    GBYB01004873    GBYB01004874    JAG74640.1    JAG74641.1    CH478268    EAT33371.1    KQ971343    EFA03495.2    JXUM01069817    JXUM01069818    JXUM01069819    JXUM01069820    JXUM01069821    JXUM01069822    JXUM01069823    KQ562571    KXJ75581.1    ATLV01021515    KE525319    KFB46642.1    NNAY01002688    OXU20768.1    GFDL01002485    JAV32560.1    GFDL01002494    JAV32551.1    GGFK01008303    MBW41624.1    GBBI01000284    JAC18428.1    GDKW01002580    JAI54015.1    GGFJ01003149    MBW52290.1    GGFJ01003146    MBW52287.1    APCN01001728    ADMH02001841    ETN60941.1    GBGD01000602    JAC88287.1    GGFL01000658    MBW64836.1    AXCN02002066    GECL01003554    JAP02570.1    GGFL01000656    MBW64834.1    GFTR01007905    JAW08521.1    AXCM01001931    GGFL01000659    MBW64837.1    AJVK01009549    AJVK01009550    AJVK01009551    AJVK01009552    GALX01002537    JAB65929.1    AK417569    BAN20784.1    GECZ01020437    JAS49332.1    AJWK01015872    AJWK01015873    AJWK01015874    AJWK01015875    AJWK01015876    AJWK01015877    AJWK01015878    APGK01040621    KB740984    KB630727    KB632357    ENN76202.1    ERL83831.1    ERL93428.1    GEBQ01005741    JAT34236.1    GDAI01000950    JAI16653.1    ADTU01006953    ADTU01006954    ADTU01006955    GFDF01010032    JAV04052.1    GEDC01018821    GEDC01007489    GEDC01007336    GEDC01004878    JAS18477.1    JAS29809.1    JAS29962.1    JAS32420.1    CP012523    ALC38867.1    GECU01027871    JAS79835.1    GECU01026688    JAS81018.1    GBHO01015753    GBRD01011620    GBRD01011619    GBRD01011618    GDHC01019411    JAG27851.1    JAG54204.1    JAP99217.1    GECZ01028414    JAS41355.1    CH916372    EDV99171.1    CH933807    EDW12590.1    KRG03315.1    KQ414685    KOC63791.1    AE014134    AAN10382.1    GAMC01012718    JAB93837.1    CM002910    KMY87961.1    DS235226    EEB13637.1    GDHF01010273    GDHF01010151    JAI42041.1    JAI42163.1    CH940649    EDW64669.1    JXJN01011881    CH902620    EDV31229.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    UP000036403    + More
UP000279307    UP000235965    UP000000311    UP000078542    UP000078540    UP000078492    UP000053097    UP000053105    UP000078541    UP000075809    UP000002320    UP000008237    UP000075880    UP000192223    UP000008820    UP000007266    UP000069940    UP000249989    UP000030765    UP000215335    UP000075902    UP000076407    UP000075840    UP000000673    UP000075881    UP000075886    UP000075883    UP000092462    UP000076408    UP000075882    UP000075884    UP000075900    UP000075903    UP000092461    UP000019118    UP000030742    UP000075901    UP000075920    UP000075885    UP000005205    UP000092553    UP000001070    UP000009192    UP000053825    UP000000803    UP000009046    UP000092443    UP000008792    UP000092460    UP000007801   

PRIDE

Q8IQ03   

Pfam

PF00686   CBM_20        + More
PF03009   GDPD
PF00445   Ribonuclease_T2

Interpro

IPR017946   PLC-like_Pdiesterase_TIM-brl        + More
IPR013784   Carb-bd-like_fold       
IPR030395   GP_PDE_dom       
IPR013783   Ig-like_fold       
IPR002044   CBM_fam20       
IPR033506   Gde1       
IPR034839   CBM20_GPCPD1       
IPR033130   RNase_T2_His_AS_2       
IPR033697   Ribonuclease_T2_eukaryotic       
IPR001568   RNase_T2-like       
IPR036430   RNase_T2-like_sf       

SUPFAM

SSF49452   SSF49452        + More
SSF51695   SSF51695       
SSF55895   SSF55895       

Gene 3D

2.60.40.10     3.20.20.190     3.90.730.10    

CDD

cd05814  CBM20_Prei4
cd01061  RNase_T2_euk

ProteinModelPortal

A0A194R2M2   A0A194PKN3   A0A212F0T5   A0A2W1BZT7   A0A2A4IWP3   A0A0L7KNP5   + More
V9I6V9   A0A1Y1MYM1   V9I831   A0A0J7L703   A0A1Y1N1M3   V9I8L2   V9I8Y4   V9I6X4   A0A3L8DDC4   V9I6V4   A0A0C9PN27   A0A2J7QNK3   E2ACQ6   A0A2J7QNP6   A0A151ILG5   A0A195AVL5   A0A195DNM7   A0A026WB24   A0A0M8ZUI6   A0A195FID5   A0A151WHS5   E9ISB5   B0WPG3   E2BUY4   A0A182J9V2   A0A1W4WEM6   A0A0C9PU55   Q16GK4   D6WL75   A0A182GKE4   A0A084W8U8   A0A232EQZ8   A0A1Q3FYG6   A0A1Q3FYD2   A0A2M4ALH9   A0A023FBW1   A0A0P4VNE4   A0A182TER7   A0A182X341   A0A2M4BGW0   A0A2M4BGX2   A0A2C9GRA4   W5JAD7   A0A069DX70   A0A2M4CHL4   A0A182KFG8   A0A182Q6P8   A0A0V0G5A2   A0A2M4CHN0   A0A224XKF3   A0A182ML41   A0A2M4CHL5   A0A1B0CZE2   V5GPA3   A0A182YDJ8   A0A182KTS7   A0A182NC15   A0A182RBJ8   R4WDJ2   A0A1B6FGJ7   A0A182UWU9   A0A1B0CK74   N6UC22   A0A182SM15   A0A1B6ME86   A0A182WGR8   A0A0K8TR97   A0A182PLN4   A0A158P2K7   A0A1L8DC78   A0A1B6CYF6   A0A0M4EEZ6   A0A1B6HYY1   A0A1B6I264   A0A0A9Y8A0   A0A1B6ETP9   B4JQJ1   B4KJY7   A0A0L7QYZ6   Q8IQ03   W8B5E3   A0A0J9QVD5   E0VJT1   A0A0K8VT18   A0A1A9XV81   B4LRR7   A0A1B0BC83   B3MP63  

PDB

3L12     E-value=6.93572e-07,     Score=128

KEGG

101743990    no KO assigned | (RefSeq) uncharacterized LOC101743990

GO

GO:0047389   GO:2001070   GO:0046475   GO:0016021   GO:0030246   GO:0033897   GO:0003723   GO:0008889   GO:0006629   GO:0008081   GO:0005840   GO:0006412   GO:0043401   GO:0003677   GO:0003707   GO:0004651   GO:0005634  

PANTHER

PTHR22958:SF1  

Length:

454

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00256

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00855

outside

1  -  454

 

 

Pi

360.730527

Theta

218.607232

Tajima's D

-1.178508

CLR

0.483822

CSRT

0.106444677766112

Interpretation

Uncertain