Silkworm Genome Informatics Database

Gene

KWMTBOMO01887

Annotation

PREDICTED:_uncharacterized_protein_LOC105398531_[Plutella_xylostella]

Location

Bomo_Chr4(-):7390419-7392658 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.811

CDS

ATGGACGTGTGTAGTAGTACAATAAGAGACCTAATAATACATGATAATATTGACGGCATAATTGAATTTCTCCGATCTGGCTTAAATCCAAACTACAAAGGTGGGTGGCCAATAAGGTTGGCTGCTCGACATGGATTGTTTGCTGTGGTAAAATTGTTTATTCAATTTGGTGCAGATCCTCATTTATTGAGTGGAACAGGGGCTTCTACGTTACAGCTTGCTGTATTTTCTGGAAAGCACTGGAATACTGATAATTGGATATTTTTACTTTCATATTGTGATTCTTCACAACTAGCAGACGGAGCTGCAGTAGCAATTGTGTTTAAAAATGTTGTAGCATTAAAAAAAATATTGGCTACGGGACGATGTAACGTACATGTACCGACGTCTCTAACAGGAAAAACCCTTGACCAATTGGCAAAAGGCTATAAAGTATCGAATTGGTTAGAGGCACCGGGATCAAGTCATTTTCCCGAAAACGAACGGATCGTGACGCTTCACTTAGCTTGCAGAGATCCTCGACAAATACCAACAGTGCAGTTCCGAATTCTCCAAGAAACATATTACAGCAAGAACCTACCTTGA

Protein

MDVCSSTIRDLIIHDNIDGIIEFLRSGLNPNYKGGWPIRLAARHGLFAVVKLFIQFGADPHLLSGTGASTLQLAVFSGKHWNTDNWIFLLSYCDSSQLADGAAVAIVFKNVVALKKILATGRCNVHVPTSLTGKTLDQLAKGYKVSNWLEAPGSSHFPENERIVTLHLACRDPRQIPTVQFRILQETYYSKNLP

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

A0A194PLL8 A0A194R2L7 S4PBH1 A0A2A4J6S9 A0A2H1WMV2 A0A077Z8I3 + More
A0A0B1PGV2 A0A085NHM2 A0A085M5K1 A0A0M3IPU6 F1KRB1 A0A2B4R5M6

Pubmed

26354079 23622113 24929829 21685128

EMBL

KQ459601 KPI93893.1 KQ460870 KPJ11764.1 GAIX01005912 JAA86648.1 + More
NWSH01002982 PCG67150.1 ODYU01009731 SOQ54358.1 HG806074 CDW56762.1 KN538417 KHJ41428.1 KL367499 KFD68968.1 KL363227 KFD52497.1 JI164595 ADY40415.1 LSMT01002045 PFX11667.1

Proteomes

UP000053268 UP000053240 UP000218220 UP000030665 UP000036681 UP000225706 + More

Pfam

PF12796   Ank_2        + More
PF08712   Nfu_N
PF13339   AATF-Che1
PF00013   KH_1
PF01106   NifU
PF08164   TRAUB
PF13606   Ank_3
PF00520   Ion_trans
PF00023   Ank
PF00534   Glycos_transf_1

Interpro

IPR002110   Ankyrin_rpt        + More
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR025160   AATF
IPR004088   KH_dom_type_1
IPR004087   KH_dom
IPR001075   NIF_FeS_clus_asmbl_NifU_C
IPR012617   AATF_C
IPR036612   KH_dom_type_1_sf
IPR014824   Nfu/NifU_N
IPR036498   Nfu/NifU_N_sf
IPR034904   FSCA_dom_sf
IPR002153   TRPC_channel
IPR005821   Ion_trans_dom
IPR001296   Glyco_trans_1

SUPFAM

SSF48403   SSF48403        + More
SSF110836   SSF110836
SSF54791   SSF54791
SSF117916   SSF117916

Gene 3D

1.25.40.20 3.30.1370.10 3.30.1370.70 3.30.300.130

CDD

cd00204 ANK

ProteinModelPortal

A0A194PLL8 A0A194R2L7 S4PBH1 A0A2A4J6S9 A0A2H1WMV2 A0A077Z8I3 + More
A0A0B1PGV2 A0A085NHM2 A0A085M5K1 A0A0M3IPU6 F1KRB1 A0A2B4R5M6

PDB

1BI8 E-value=0.000210224, Score=102

KEGG

101737546 no KO assigned | (RefSeq) uncharacterized LOC101737546

GO

GO:0051536 GO:0005634 GO:0005506 GO:0003723 GO:0016226 GO:0016021 GO:0005262 GO:0005515 GO:0051082 GO:0006457 GO:0008033 GO:0043565 GO:0043401 GO:0003677 GO:0003707 GO:0004651

Length:

194

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.81045

Exp number, first 60 AAs:

0.33804

Total prob of N-in:

0.23179

outside

1 - 194

Pi

292.859087

Theta

170.484076

Tajima's D

1.787102

CLR

0.222918

CSRT

0.84340782960852

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics