Gene

KWMTBOMO01884  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005948

Annotation

PREDICTED:_C-type_lectin_4_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(-):7354631-7362708      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.315 Nuclear   Reliability : 1.241 PlasmaMembrane   Reliability : 1.032

CDS

ATGAGCCGGCACTTTTGCCTGGCGGCAGCAGTTTTGTTCGCGGCACTATGCTTCGCTGAGGCCCAGAGACGTCTAGCTTTACCAGATCCCAGGAGTTGTGCCAACCGAGTACGCCATTCGACATACCGCGATGCACGGGGAGTACTACATTCGTATTTCTTTAGCTGGGAACATGCTCCAACACGCAGCTTAGAAGTGGATTGGCTGGACGCAAGGAACATCTGCCGCAGGCATTGCATGGACGCTGTTTCCTTAGAAACACCCCAGGAAAACGAATTTGTAAAGCAAAGGATCGCTCGCGGAAACATACGTTACATTTGGACTTCTGGTCGTAAATGTAATTTCGCCGGCTGTGACCGCGGTGACCTACAGCCTCCAAATGTGAACGGTTGGTTCTGGTCAGGTTCGGGAGCCAAGATCGGGCCCACCACCCAACGTAACACGGGCGATTGGTCTTACACCGGTGGCTACGGTCAAGCGCAGCCTGATAACAGAGAAGCTGCTCAAGGTAACGACGAGTCCTGTCTGGCGATACTTAACAACTTCTATAATGATGGCATTAAATGGCACGATGTGGCTTGCCACCACGTAAAGCCATTCGTGTGCGAAGACAGTGATGAACTACTTAATTTTGTCCGATCACGGAACCCGGGACTGCGTCTCTAA

Protein

MSRHFCLAAAVLFAALCFAEAQRRLALPDPRSCANRVRHSTYRDARGVLHSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTSGRKCNFAGCDRGDLQPPNVNGWFWSGSGAKIGPTTQRNTGDWSYTGGYGQAQPDNREAAQGNDESCLAILNNFYNDGIKWHDVACHHVKPFVCEDSDELLNFVRSRNPGLRL

Uniprot

D2X2F7   A0A2W1BK74   A0A2H1X2K3   A0A2A4JBB8   A0A212F0U5   A0A219YXG2   + More
I4DLZ7   A0A2M4DNC3   A0A182M2E3   A0A182R6T5   A0A182YHA3   A0A182VT07   A0A182PF74   A0A182UWL9   A0A182JY93   A0A182TW34   A0A182XB44   A0A182KJQ4   Q5TPA6   A0A182I0N9   A0A182Q026   A0A182FMS9   A0A084W635   A0A194PKD1   T1DL69   A0A182N8K3   B2DBF4   A0A0L0CIK9   A0A1Q3FQW7   B0WF16   A0A1A9X8B0   A0A1B0BZL0   A0A1B0G6A1   A0A1B0AIT3   A0A1A9VA03   A0A023EIY2   A0A2K8JWW1   A0A1A9WBW0   A0A1I8Q8V5   A0A0A9ZAJ6   A0A1B0D1K8   A0A146MDY1   A0A1I8Q8W5   A0A182G3Y3   B3MKB4   A0A1I8NIN8   A0A0P8XGV6   A0A1J1I1Z7   W8C1K7   A0A0A1XEN8   A0A0K8TZL2   A0A034WC07   A0A1L8DQ56   B4KKA5   N6U964   B4LRV4   A0A2R7X319   A0A1W4W7D5   B4HY69   E0VF75   A0A0R1DLN5   B4Q5Q2   Q9VM07   A0A1B6EME2   A0A2A3E305   Q16R55   D3XL68   A0A087ZNY6   A0A3G1CIC9   B3N6K6   B4JDE4   D6WKP2   A0A067RBR3   A0A2P8Y7L9   A0A151X706   B4NZK1   E2B0H0   A0A2J7R7K2   B4MZU7   A0A1V1FIP4   F4W8F3   A0A195BAZ3   A0A158NK57   A0A195FAH5   A0A0M4EEX3   A0A1Y1L4E6   A0A195C2S6   A0A1S4H9W5   A0A195EIZ4   A0A3B0K7K5   Q29NX7   B4GJR1   A0A182T631   K7IQ55   A0A0M9A0H1   A0A171AVF2   T1H8X9   A0A1W4X6N4   A0A232ERG2   A0A0L7RAP9  

Pubmed

28756777    22118469    22651552    25244985    20966253    12364791    + More
14747013    17210077    24438588    26354079    18712529    26108605    24945155    25401762    26823975    26483478    17994087    25315136    24495485    25830018    25348373    23537049    20566863    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    21695780    18362917    19820115    24845553    29403074    20798317    28410430    21719571    21347285    28004739    9087549    15632085    20075255    28648823   

EMBL

GQ487490    ADB12588.1    KZ150033    PZC74691.1    ODYU01012907    SOQ59446.1    + More
NWSH01002168    PCG68988.1    AGBW02011047    OWR47324.1    KX550116    AQY54433.1    AK402315    BAM18937.1    GGFL01014879    MBW79057.1    AXCM01000242    AAAB01008980    EAA13809.5    APCN01005226    AXCN02001838    ATLV01020721    KE525305    KFB45679.1    KQ459601    KPI93896.1    GAMD01000591    JAB01000.1    AB264633    BAG30713.1    JRES01000438    KNC31319.1    GFDL01005086    JAV29959.1    DS231913    EDS25924.1    JXJN01023188    JXJN01025268    CCAG010005175    GAPW01004185    JAC09413.1    KY031156    ATU82907.1    GBHO01002688    JAG40916.1    AJVK01010291    AJVK01010292    GDHC01000676    JAQ17953.1    JXUM01007001    KQ560228    KXJ83734.1    CH902620    EDV32498.2    KPU73979.1    CVRI01000038    CRK93786.1    GAMC01003512    GAMC01003511    JAC03044.1    GBXI01004443    JAD09849.1    GDHF01032606    GDHF01024141    GDHF01013501    JAI19708.1    JAI28173.1    JAI38813.1    GAKP01007096    GAKP01007095    JAC51857.1    GFDF01005488    JAV08596.1    CH933807    EDW12636.1    APGK01044125    KB741020    KB631628    ENN75122.1    ERL84836.1    CH940649    EDW64706.1    KK856583    PTY26051.1    CH480818    EDW51999.1    DS235107    EEB12031.1    CM000157    KRJ97373.1    CM000361    CM002910    EDX04098.1    KMY88780.1    AE014134    BT001650    AAF52521.1    AAN71405.1    GECZ01030695    JAS39074.1    KZ288443    PBC25692.1    CH477724    EAT36878.1    GU358193    ADD51171.1    KT808468    KT808469    ALG65085.1    CH954177    EDV59222.1    CH916368    EDW03314.1    KQ971342    EFA04534.1    KK852561    KDR21331.1    PYGN01000830    PSN40257.1    KQ982472    KYQ56078.1    EDW87750.2    GL444608    EFN60812.1    NEVH01006731    PNF36813.1    CH963920    EDW77882.1    FX985238    BAX07251.1    GL887908    EGI69444.1    KQ976537    KYM81390.1    ADTU01018706    KQ981693    KYN37625.1    CP012523    ALC38830.1    GEZM01066900    JAV67661.1    KQ978344    KYM94895.1    AAAB01007797    KQ978881    KYN27834.1    OUUW01000006    SPP81999.1    CH379058    EAL34516.1    CH479184    EDW36877.1    KQ435798    KOX73309.1    GEMB01000605    JAS02527.1    ACPB03001436    NNAY01002650    OXU20866.1    KQ414618    KOC67908.1   

Proteomes

UP000218220    UP000007151    UP000075883    UP000075900    UP000076408    UP000075920    + More
UP000075885    UP000075903    UP000075881    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000075886    UP000069272    UP000030765    UP000053268    UP000075884    UP000037069    UP000002320    UP000092443    UP000092460    UP000092444    UP000092445    UP000078200    UP000091820    UP000095300    UP000092462    UP000069940    UP000249989    UP000007801    UP000095301    UP000183832    UP000009192    UP000019118    UP000030742    UP000008792    UP000192221    UP000001292    UP000009046    UP000002282    UP000000304    UP000000803    UP000242457    UP000008820    UP000005203    UP000008711    UP000001070    UP000007266    UP000027135    UP000245037    UP000075809    UP000000311    UP000235965    UP000007798    UP000007755    UP000078540    UP000005205    UP000078541    UP000092553    UP000078542    UP000078492    UP000268350    UP000001819    UP000008744    UP000075901    UP000002358    UP000053105    UP000015103    UP000192223    UP000215335    UP000053825   

PRIDE

D2X2F7    Q9VM07   

Pfam

PF00059   Lectin_C        + More
PF00008   EGF

Interpro

IPR001304   C-type_lectin-like        + More
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR018378   C-type_lectin_CS       
IPR013032   EGF-like_CS       
IPR000742   EGF-like_dom       

SUPFAM

SSF56436   SSF56436       

Gene 3D

3.10.100.10    

ProteinModelPortal

D2X2F7   A0A2W1BK74   A0A2H1X2K3   A0A2A4JBB8   A0A212F0U5   A0A219YXG2   + More
I4DLZ7   A0A2M4DNC3   A0A182M2E3   A0A182R6T5   A0A182YHA3   A0A182VT07   A0A182PF74   A0A182UWL9   A0A182JY93   A0A182TW34   A0A182XB44   A0A182KJQ4   Q5TPA6   A0A182I0N9   A0A182Q026   A0A182FMS9   A0A084W635   A0A194PKD1   T1DL69   A0A182N8K3   B2DBF4   A0A0L0CIK9   A0A1Q3FQW7   B0WF16   A0A1A9X8B0   A0A1B0BZL0   A0A1B0G6A1   A0A1B0AIT3   A0A1A9VA03   A0A023EIY2   A0A2K8JWW1   A0A1A9WBW0   A0A1I8Q8V5   A0A0A9ZAJ6   A0A1B0D1K8   A0A146MDY1   A0A1I8Q8W5   A0A182G3Y3   B3MKB4   A0A1I8NIN8   A0A0P8XGV6   A0A1J1I1Z7   W8C1K7   A0A0A1XEN8   A0A0K8TZL2   A0A034WC07   A0A1L8DQ56   B4KKA5   N6U964   B4LRV4   A0A2R7X319   A0A1W4W7D5   B4HY69   E0VF75   A0A0R1DLN5   B4Q5Q2   Q9VM07   A0A1B6EME2   A0A2A3E305   Q16R55   D3XL68   A0A087ZNY6   A0A3G1CIC9   B3N6K6   B4JDE4   D6WKP2   A0A067RBR3   A0A2P8Y7L9   A0A151X706   B4NZK1   E2B0H0   A0A2J7R7K2   B4MZU7   A0A1V1FIP4   F4W8F3   A0A195BAZ3   A0A158NK57   A0A195FAH5   A0A0M4EEX3   A0A1Y1L4E6   A0A195C2S6   A0A1S4H9W5   A0A195EIZ4   A0A3B0K7K5   Q29NX7   B4GJR1   A0A182T631   K7IQ55   A0A0M9A0H1   A0A171AVF2   T1H8X9   A0A1W4X6N4   A0A232ERG2   A0A0L7RAP9  

PDB

5VC1     E-value=0.000639359,     Score=99

KEGG

100329158    no KO assigned | (RefSeq) CTL4, BmCTL4; C-type lectin 4

GO

GO:0030246   GO:0016021  

SignalP

Position:   1 - 21,         Likelihood:  0.992602

 

 

Length:

221

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.43671999999999

Exp number, first 60 AAs:

4.43669

Total prob of N-in:

0.26960

outside

1  -  221

 

 

Pi

180.229394

Theta

165.297271

Tajima's D

0.256792

CLR

0.829372

CSRT

0.43802809859507

Interpretation

Uncertain