Silkworm Genome Informatics Database

Gene

KWMTBOMO01883

Pre Gene Modal

BGIBMGA006194

Annotation

PREDICTED:_polycomb_group_protein_Psc-like_[Bombyx_mori]

Location

Bomo_Chr4(+):7341749-7350568 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.603 Mitochondrial Reliability : 1.194

CDS

ATGGATAATAGTAACGTTGCCGTTGTACCGCAAAGAACATTATTGGGTGAAGTTAACGAACATATAACGTGCCCATTATGTCGAGGGTACTACATAGATGCGACCACAATAGTGGAATGCTTGCATTCCTTTTGTCGTAGTTGTATTATTAAACACCTTAAAGCAAAGAGCTACTGTCCTGTATGTGAAATGATGATAAATTCGGCAAAACCCAATATCAAACTTGACAAAGCACTGCAGGACATAGTCTACAAACTTGTGCCTGGGCTCTTCCAAAAAGAAATGGAAAGGCGGCAACATTTTTATGCCTCGAGGCCTGGACAAGCCGCAACAGCTACACCAGAACAGAGAGGTGAAGACACAGAAAGAATAATTTTCAGTCCTGAAGATGTCATTTCATTTTCGTTAGAATATGCTGATGTCACAGATACTGATAGCATATCCAGTAAATCTTCAGATAGTAATGAGCCTCCACCAAACTCAGCATCTACTAGAAGATATTTACAATGCCCAGCTGTTGTGAATATAAGTCACCTAAAAAAGTTCTTAAGTAAAAAGTTTGATGTTGACAGTTCACAGTTTGCTATTGATATCTTATACAAGAAAGTACCTTTACCTGACTACTATACTTTAATGGATATTGCTTATATTTATAATTGGAAAAGGAATGAGCCTATGAGATTTTTTTACCAGATAATCGATTATGTAGCAATAAGGAACAGAATTTTTGATATAAACAGAAAACGATCACACTTTCATGATCAAAAATTGAGTCCTGTTTCAACAGAAGATACAAGCACTAGCAGTCCGGCACCTAATTTGCATGATCATGCTTCGGAAGCTTCTTCTGGACCTAGTAGTCCCGTTCCTGATGATAATAATAGAAATACTCCTGAAGTTTTGACCAATGATAAGATGAATGTACAAAATGACGAAAGTTGTAATGATAAGAATGATTATTCCTCAACAAACAAGCTAGATGAAGATGTAGAGAAATCTCAGTTTCTGAATTCATTTGAGCTCACTGCTAAAAGTAGCTGTATACCAGTAAAATCCCCACAGAAATTCAACACAGAAAAACTATCTCTTGCGAAGGAAGTGGTTACTAAAAGCATAACAAGCAAAGTGAAAGCTGAAGACCCAACACCTGATAATTTAAAAAGAAAAAATCACACATCACCTCCTACACCTGAATTAAAGAAATTAAAAGTGGAAATATCAAATTGTTTGCCTAGTTTCAGTGTTCAACCATCAAGCTCTAGTATTAGCACCAAAACAGAAGAAAATCAAAGAAAACACGAAACTGTTGATTGTAACAAAAATAATCAATCTGCTATAAAAAATAATGCACCAAGTGCTACTCCAACTACCAGAGATTTGAAGCAACCACAGACAGTAAAGCAACAAGTTGGTACTAGTAAACAAACCTTGGATAATTCAGGTGTTAAAAGAACAGTTGTAGGACCACAAAATATTTTATCTCCCAAACGTAAACCTCCAAATGAATCCACAGCAGAGCAAGCAATGCCGCAACAACAACAGCAACAGAAGACTCTATCTCCTTTAAAGTTACAAATACCAAAATTAGATGCAGTTTCCAAAACAAGTGAAGCTCCAAAACCCCCATTAAAAAAGATACCAGATCTCAAACCGAGCATGCCAATGTTGCAATCAGCTCACAGTAAAAGTCCAGCTATGAATAAAGTCAGAATGGATCTATTGGCTAATAATAGTGACCCTACTATTGATAGAAGCAAAATATTATCACAAGTAAAATCATCCATGGGTGTACAAAGCCCAGCCCAAAATTCAGGCGACCCATTGAAATCTCTGTTTGACTCGTGCAAAATAAATATACCATCTTCCCTTTCCATTACTTTAACAGATCAAAAATCAGACAATCGCTGTCCTGTAGATACATTAGATCCTAAAAAAAATTTTACTAATAAAAACTTAGCTGCTGCTAGTAGTAGCAGTATTTCTGCCCATAAAGTGCCCAGCCCTCCAGTACACAATTATATAGAAATTTTAAAATTACCTGAATCAGATTCTAATTTGAAAAAAATTGCAAAAAACGAAGCTGATTCTAAAACAAATTCTCAATGTAAACCTGAAATAAGTCAAACAAAACCTACAACCAAAGGGTCAGAGACTTCCACTAAAGGCCCTGTTCCTAATTTAAAACCTATTGCTGACACAAAACTTGCTAAACAGGCTGGAAATTTTTCAACACCCATCACATTTCAACAAACTTTTGAACAGCAATTACAGAGCTTACAATGTGACAAAAAAGGGAAACCAAAAAATAAGGCACAGGTGCCTAAGTTGGTGCCGGCTACCCCAAAATCCCTTAGTGCTGTCACTAAACCTATCATACCAGTAAACAAACCTACAAATAGTTCTAGTACTGAAACTAAAACCGGCACTGCTTTAGATTTAACAACCCCTCACAACATTCAAAGTCAATTAGCTGTTCAGCAAACATTTGATAAAGCTTTGGAAACTATGCATTCTATAGCAAATTTGGCAAAGAAGCAGAATTTGCCATCAAAAGGGATCCCAATGTCTTTGACACATAGCAATATTTTTCCAGGCATCACAAGCAGACCTTTAACTGCTGGAATTAATTCAGTACGTTTATCATCCCCAAATACTATAAATCAAGTAAAACTTGATAAACCAAACCCAAATGTGCCAACAGTGACTGGTAATAATAGACAAGAAAGTTCTATAAAAAGCAGCCAAGTAAAACAATTAGGCAATATGAATTTGACATTGCAGTCTCCCGCTTATCAAATACCATCAGCCCACCCACCTAGCAATGCACAACCTTCACCAAGGTCTCAGACACGTTCTCCCAGTTCATCTCCTAAATTGGTCATTGCTGAAGAAAAACAAACAAGTACTACTGTAATGGAACACAATGTTAGCCAGTTGAATCAAGTAACTAGTACACATATTACTAACTTTGGTACTCCAAAGGGAGAATTATCTAAAACTTTACCAGGTCCATCAAAACCAAGTCTTAAGCAAGTAAAAAACCTCAATACAAATAAAATGTCTGTTCAGGCCACGATTCCATTTAAACATCGTAAAAGAACTTGTTTTAACAATGACGAGAATAATGATTTATCTAATATAAATTATGTTCCTAAGGAAAGAACCTTAAAAAGAAGTTTAAGAGATAGGAAAATTAAAATCGATGATGATGACAGTTCTAAAGTAAAAAAAAGTAAAAGTTCTAAAAATACCACTGATGATAGAGCAGCAGAAGTATGTTCATCTTTGAATGATGAATCCCCAAAAATATTGAAGCCTTTAACAAGTAGAGAAATGGAAATCGAACGGCTCGAAAATTTTCTAAATGAGCATTTGGAAAATGAAGAATCAGCATCAATTTACGTATCGGGTCAACCGGGAACTGGGAAAACAGCAAGTCTGTCCTATATTTTGCAGCAACCAAAAATCAAAGAGGGCTTTAAGCAGGTATACATAAATTGTACTATGATGAAATCAGCAGCCAGTATTTATAGCAGAGTGTGTAAAGAGTTGGGCTTGAAAATGACAGCTACCACTGAAAAGGCATGTGTTAAAGCAATAGAAAAGTATCTACAAAAAACACATAAAATGATCTTGTTAGTATTAGACGAGTTGGACCAATTAGACAGTAAAAGACAGTCAGTGTTGTACAGTATATTCGAATGGCCAGTCCTACCAAACTCACGAATAGTTTTGATTGGGGTGGCGAATGCTTTGGATCTAACTGAAAGAACGCTACCGAGGCTGCAAGCGAGGTGTTCCCTAAAGCCACACACTTTACACTTCGCACCATATACCAAAGAACAGATCATAAAAATATTCGTCGCCGTGTTGGCGAATGACGACAAGGCTAATGTTTTTTCGCCTGTTGCACTCCAAATGTTAGCAGCGAAGATAGCCGCTGTATCTGGTGACATGAGAAGAGCATTAGATATAGGACGGAGAGTAATTGAGGTCGCAAATCGAAACAGATTTGCAGAAAACAAATCTGTCGATAGTTTATTGAGGGATTCGTCAGTGACCGTGGAACTGAAGGAAGTTCTGCAAGTTCTGAATAACGTGTACGGTGGTTCAACGAATATAGGATCAGAAGTCGACGAAGGGCTCCCGATGCAACAGAAACTGATATTATGCAGCTTAATATTGATGTTGAATAAGGGAAAGAACACCGATATTCTGATGGGAAAGTTACATGAGGTTTACAAAAAGTAA

Protein

MDNSNVAVVPQRTLLGEVNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVCEMMINSAKPNIKLDKALQDIVYKLVPGLFQKEMERRQHFYASRPGQAATATPEQRGEDTERIIFSPEDVISFSLEYADVTDTDSISSKSSDSNEPPPNSASTRRYLQCPAVVNISHLKKFLSKKFDVDSSQFAIDILYKKVPLPDYYTLMDIAYIYNWKRNEPMRFFYQIIDYVAIRNRIFDINRKRSHFHDQKLSPVSTEDTSTSSPAPNLHDHASEASSGPSSPVPDDNNRNTPEVLTNDKMNVQNDESCNDKNDYSSTNKLDEDVEKSQFLNSFELTAKSSCIPVKSPQKFNTEKLSLAKEVVTKSITSKVKAEDPTPDNLKRKNHTSPPTPELKKLKVEISNCLPSFSVQPSSSSISTKTEENQRKHETVDCNKNNQSAIKNNAPSATPTTRDLKQPQTVKQQVGTSKQTLDNSGVKRTVVGPQNILSPKRKPPNESTAEQAMPQQQQQQKTLSPLKLQIPKLDAVSKTSEAPKPPLKKIPDLKPSMPMLQSAHSKSPAMNKVRMDLLANNSDPTIDRSKILSQVKSSMGVQSPAQNSGDPLKSLFDSCKINIPSSLSITLTDQKSDNRCPVDTLDPKKNFTNKNLAAASSSSISAHKVPSPPVHNYIEILKLPESDSNLKKIAKNEADSKTNSQCKPEISQTKPTTKGSETSTKGPVPNLKPIADTKLAKQAGNFSTPITFQQTFEQQLQSLQCDKKGKPKNKAQVPKLVPATPKSLSAVTKPIIPVNKPTNSSSTETKTGTALDLTTPHNIQSQLAVQQTFDKALETMHSIANLAKKQNLPSKGIPMSLTHSNIFPGITSRPLTAGINSVRLSSPNTINQVKLDKPNPNVPTVTGNNRQESSIKSSQVKQLGNMNLTLQSPAYQIPSAHPPSNAQPSPRSQTRSPSSSPKLVIAEEKQTSTTVMEHNVSQLNQVTSTHITNFGTPKGELSKTLPGPSKPSLKQVKNLNTNKMSVQATIPFKHRKRTCFNNDENNDLSNINYVPKERTLKRSLRDRKIKIDDDDSSKVKKSKSSKNTTDDRAAEVCSSLNDESPKILKPLTSREMEIERLENFLNEHLENEESASIYVSGQPGTGKTASLSYILQQPKIKEGFKQVYINCTMMKSAASIYSRVCKELGLKMTATTEKACVKAIEKYLQKTHKMILLVLDELDQLDSKRQSVLYSIFEWPVLPNSRIVLIGVANALDLTERTLPRLQARCSLKPHTLHFAPYTKEQIIKIFVAVLANDDKANVFSPVALQMLAAKIAAVSGDMRRALDIGRRVIEVANRNRFAENKSVDSLLRDSSVTVELKEVLQVLNNVYGGSTNIGSEVDEGLPMQQKLILCSLILMLNKGKNTDILMGKLHEVYKK

Uniprot

I6U461 A0A2W1BHX5 A0A2A4JAJ8 A0A1E1W0M9 A0A194PLM5 A0A2H1W7W2 + More
A0A194R2L2 A0A0L7LFJ0

Pubmed

28756777 26354079 26227816

EMBL

JX033966 AFN02447.1 KZ150033 PZC74689.1 NWSH01002168 PCG68991.1 + More
GDQN01010570 JAT80484.1 KQ459601 KPI93898.1 ODYU01006882 SOQ49123.1 KQ460870 KPJ11759.1 JTDY01001274 KOB74323.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000037510

PRIDE

I6U461

Pfam

PF16207   RAWUL        + More
PF09079   Cdc6_C
PF13401   AAA_22
PF00004   AAA

Interpro

IPR001841   Znf_RING        + More
IPR032443   RAWUL
IPR017907   Znf_RING_CS
IPR013083   Znf_RING/FYVE/PHD
IPR036390   WH_DNA-bd_sf
IPR003593   AAA+_ATPase
IPR036388   WH-like_DNA-bd_sf
IPR015163   Cdc6_C
IPR027417   P-loop_NTPase
IPR003959   ATPase_AAA_core

SUPFAM

SSF46785 SSF46785 + More
SSF52540 SSF52540

Gene 3D

3.30.40.10 1.10.10.10

CDD

cd08768 Cdc6_C

ProteinModelPortal

I6U461 A0A2W1BHX5 A0A2A4JAJ8 A0A1E1W0M9 A0A194PLM5 A0A2H1W7W2 + More
A0A194R2L2 A0A0L7LFJ0

PDB

4R8P E-value=7.9085e-31, Score=339

KEGG

101743694 K02213 cell division control protein 6 | (RefSeq) polycomb group protein Psc-like

GO

GO:0005524 GO:0005515 GO:0008270 GO:0008616 GO:0008033 GO:0043565 GO:0043401 GO:0003677 GO:0003707 GO:0004651 GO:0005634

Length:

1416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01477

Exp number, first 60 AAs:

0.00056

Total prob of N-in:

0.00010

outside

1 - 1416

Pi

197.366317

Theta

171.17288

Tajima's D

0.07685

CLR

0.252812

CSRT

0.393530323483826

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics