SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01876
Annotation
PREDICTED:_uncharacterized_protein_LOC101743413_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr4(-):7256987-7280818      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.348
 

Sequence

CDS
ATGGATTTAAAGGATATGAAAAATCACAAACAAGACAAGAAGTCTTTAAAATTGAAAGCAAAGAATGGAAAGGCTGAGGTTTTTGTTTTATCCCCAAACATTTTGGAAAAACTTGGGATACATTTGAAATCGGATGATCCTGCATCACAAACAAATGTTCAACAAGAACATACAACAATAACTAATGAAGAAATGCGTAACGATTCGGAATTTTCGGATACAAATGTTTTACGAGAAGATAATTCTGTGGCTCAAGCAGAAATGCATTATGAAGAAGAAATAACAGAACCGAATATAATGAATGGGAATATGGATGATACAATTTTAGAAACTGCAAGATTAATGAAGAAATCAATTTTTTTGAGTCCCACATTTGTATCAACTATTTCAAGAATTCCTGGTGAAATTGAAGTTGCTGATTACGCTGTAGATACTGAAACGTCAAATGAAAATTCTGAGATACAAGGAGCAATGAAAGTGAAAAATTTCAACAATTGCAGAATAGTCATAACATTGGCGAAGCTGAAGAATGATTTATTGGAAGAAATAGAAAATGGAAATGGTGAGTTGAACTTGAACTTCTGTTGGTATCACTGTGACTGGAGCAAGGATGATTGTAATGACGATAGTGAAGTGTTTATTCTCCAAGAAAGTGATCAAATAGCCCTCTGTAAAAACTTAAAACCACATGCTGAAATGAGTAGTATTATGCAAGATTTTGATGATGGGACCCTTCAAGATTTACAAGATCTAATTATTGAAGTTCCGTTGCAGAATATTAAGATTGGAGATGGAGAAATGAAGAATAAATGTTGTGTTTGTAATAAAATAATAACGGAGGAACGATGGGAAAGTCATATTTCTGAACAACATTGCTATATGGCTTGGAGACCCGGTAGTATACTTAATTTGGATGATGAGAATCTGCTGAATAAACTGAAAAAGAGATTGAAAGATGTTGGGCATTTGACATGTACATTTTGTGGTGCCGAAAAATTTAAAAGATTGAAAAAATTCATTGTTCACATAAAAGAATGTGTCAATTTCAAGGTTACCGATTTTAGTGAGAGTTCTGCTTTAATGACCAAATGTGGAGTTTGTGGTTTGAGTGTGGAAATGTCCAAGTGGATAGATCATATAGCCATTAGTCACAGTTATAAAGCTTGGAAAGATAGTGAAGAGCCATTGGATTTGGATAACGAAGATGCGATAAATACTCACCTAAAGAAAATTTGTAAACATTTTGGGGGGCTTTATTGTTCTAAATGTGGTGTTCATTACAAATTCTTAAAATATTACTTGGCACATCAAAAAATGTGTCGCCATGATATTATAATCGGTAATGATCCTGCAGTTAAAATAAATATTATGAGAGAACATGAAGCTGCCGAAAAAGTGGTTGATGAAAGCCTACATTCAATTGAACAAACAAAATCTAAAAATGAAAGTTTGATTCAAAATAGCTCTGATAAAAATTCTATATTTACATCTACCCCGAAACAGAATAGTATGAAATCGAAATTGAAGGACACCAAAAGTGATAGACAGCTTAAAAATGTAAAAAGGCAAAAAGCTGAAAGCAGCGGAATCTTATGTTCTAAAAACCCAAGCAAAAATCCAGAACCACACACTTCAGCGACGACAAGTAATAAAACCCACGATTCTAACAAAAAGTTAGATAAATCCGTGAAAACTATAACAAATGACGCTCTCTCTCCGCCCTCTAAAAGAAATAGAAGAATGAGAGATTCAGGTTCTGATATGAATTGTCTTATATCTGAAAATAAACAAAACGATGCAGAATCAACTCCGCCGTCAGATGAAATGAATAAATCACTTGAAAAAAATGATTCAACAAACAATGTACCACAATTTCAACTGGATGCTGTTTCACCCATCCAAAAGAAAAGAGGTAGAAAACGTATATCCGTAGCTGCTGCTGACGACGACAATGATGTAAACAAAGTTCGTAATAACTCCAAGGATAATAGCTTCAGCAAAAAACATCGAAGGAATTCCGGATCAATGTCTACCGGGAAAGAATTAGAAGTAATTATTGAGCCTACAAATAGTAAAACATCTGCTAGGGTTGGTCGTCTACAAAATGATAGCAATGAAAAAATACCAATTACTGAACGTAGAAGTGTTTCCAATAGCAAAAGGAAACAGAAGTCTGGCGATAAAACTCCGTGTAGAATAGAAAAATCTAGCATCGATTCCACGAATGCTTCAAACGAATGGTTGGTTCCGAAAAGCGAGAGAAACGATGCAACCGAAATTGTTTCGGTAAATGAAAAAGAAGACGACAGTAATGTTAAATGTGGTGTTTGTCTAGAAGTCGTTTCGTCATCGTCATGGATTGATCACATTGCAAATACTCACTATTATCTAGCATGGAAAGATGGAACTAATCCTATTAATTTGAATGATGAGGATGTGGTGAAAAATCATTTGTTCGAGATACGGGAACAGTGTAAAACTTTCACTTGCAAAAAATGTCAAATACAACGTAAATATCCCAAAGCATTCATAAAACACGTACAAGAGTGTGACCCGGAGAAGTTTGCTAGCATAGCCGCCTCCCTGGGCATGAACGCATCAGAAGTCAGCCTCGACCTTTCTGACTCTACACTAGAATCCAAGAACAACGCAAAGTTGACAGGAACGTTGAATTGTGGAGTTTGCTTCAAGGAAGTGGAGGCAAAAAAGTGGATCTTCCATATATTCAAGTATCATGACTATTTGGCTTGGGTCGAAGGCGAAACTCCTTTAGATATAAAAAACGAGGAGGAGGTACAGCAATTTTTGTACAAAATAAATAGAGAGTGTGGCGGTCTAACGTGTTCGAAATGTGGATTAGTTCGTAAATACGTGAAATCGTATCAGCAACACTTTGAGACGTGCAGCGGATCGAACCTGTTCCTTGAGAATGTAGACGGAGATTCAGTAGTTCAGTGCGCTATTTGCTCCAAAGAGGTGATGTACGCTCACTGGAAAAGTCACGCAATGTCTGAGCATTACAACATAGCTTGGATAGAGGGTTCCGTTCCATTAGACCTGAATAATTTTTATGCCGTCGAATCTCGCCTTAAAGCGTACAGTAAGATTCACAAGTTGGTTTGTAAGAACTGCGGAACAAGCAGGACCTCGTGTTATGGATTCTACGCTCATATTTTAACTTGTGGTAAATCAGAAGAAGAAACGGAGCGATTCAAAGAAGTATGTGAAGTGTGCCAAAATAAATATTTGTGCGTTTACAAATCCCAACACATGGCGGCGCACCGAGAAAAGGAATATGCAATACAACGAAAGTTGAAATTGGTAGAGGAAAAGAAAAAGAAGAAGGAATGTGAGCAAGTGCCTCAAGATCGGAGAAGGGCAGCTAAAAAGGCATTAGATGTCATTGAAAATTATAATTCTAAAAATGAAGATGGTGAGAATGTCTGTGGAAAATGTGGGGCACACACCGAGCAAGGGACTGAGCATGTTTGTTGTAAAACTGAAGAAATATCTAGTGATTCTGATGTTTCTGTGAAAATGGAAAATGTATCGGACGATGATGACGAGTCTGATTACACCGAAATCGATTCCTCAGTGTCCGATGTTGAAGAAGAACAATTGAAAGAATTGAAAAAGAAAAAACCGGAAATCGTTTCAAGTATAACGGCGGTATCTAAAGCAACAAGAATTCCGTATCAGGTATCAGATATACCAACGTATCTGCAAAGTAGCTACCTTGACTTTTGTCAAACTCATCTGACCGGTGAAACTTTATTTCCTGAATGGGAGAAATTTGATTATGTGCCGTTAGATCAGGATGGTATCAATAAATATCTACCGAAAATCGAAACATCATGTGAAGTCAAATTTTTGGATAATACGTCATGGAAGACCTTCAAACGATTCGAGTCCTGGAAAAGAGAAAAGCACCGGATCATATTTGTCGGTGGCAGCATTCATTGCATAGCGTGGGTGCCTCCTCACGTGGAGGACAAAACGGGCGAGGAGGGCATGTACTTGGCGGTGGCCTGCCACGCCGCCGGCGACTCTCCCCGGTACAACTACGACGTGACCCGGGAGCACGCCGGCTTGCTGCAGATATGGGATTTCGGCAACATTCAAACAAGTTTACCAAAGTTTGTGTTTGGGCTAGCGCACGATTTTGGTGTCGTGTGGGCCATGGATTGGTGTCCGTCCGGAGCTAGAGACCTTATGGTAGATGGTGCAGTAGATAAAATATGCAAATTGGGTCTACTCGCCGCGGCTTGTTCCAACGGCTCTGCCTACATATTCCCCGTACCTTACCCGTCCACGTTGCCCGACATAGAAAGTATTATTTACAAGGTGATACCCGTGGCAGAATTAAGACTAGAAATGAACGTTAATCGCAAGAAATATCAAGCGACTTCTATAAGTTGGTCACCTCAAAAGGGACATTCGATGATAATTGTCGGCTACTCGGATGGCACCACGGCACAATATGACATTAAAACAGAGTCGCCTCTATTGAGAAGCACAGAAAATGAAGTAACGATAATTTATCCATATCACGATGACCGTATACACAAAACGGCTGTGACAGGAGTGGGGGTGTTCCCCGGCGGCGACGGCGGAACCAGCGCCACCTGCAGCGGGTCAACGACCGGGGCCCACGTGGAGTTCGGCGTGGGAGCGACCGCGGGCCGGACCGGCTCGCTCTACACCGCCTTCTGCTGCACCAACATCAGCTTCTCCCCTCTCTGGCCGTCCACCATCATGGCTGCCGAGAGCACTATGGGAGTGAGCCAGATGGTGAACGAGTTGGAGTGGGGCGCGGGCGGGCGGCGGCTGGGCGTGATGCGCGCGGGCGCGGCGTGCGCGCTGTGCGGCCGCCTCGCGCACGCCGCGCCGCCGCTCGTGCGCGTGCTGCGGACGCATCCCGCCTACACGGATGTCAAGAAACTCATCGTGGCTTCGATTGAAATGATCCCGATCAACGGTCGACGGAAGATACAGACCGACGAGCTCTGTATGAAAGTAGAGCCGCTCGATTACGACGAGGCTGTAAAAGAGTATGGATTGCACATTAAAAAAATCCACCGCAAAGACAAGGTTGCAATGGCAAAGGCGTCTATGTTGTCCACGACTCCGTGTCCTGAAAGGTTTCCGTTGGCAGATATCACCTGTTTAGCATTTTGTCCCACCATAAGGCATCACGATAAACTGGCAGTCGGTCTACACTCTGGTATACTGCTGCTTTTTACTTTATAG
Protein
MDLKDMKNHKQDKKSLKLKAKNGKAEVFVLSPNILEKLGIHLKSDDPASQTNVQQEHTTITNEEMRNDSEFSDTNVLREDNSVAQAEMHYEEEITEPNIMNGNMDDTILETARLMKKSIFLSPTFVSTISRIPGEIEVADYAVDTETSNENSEIQGAMKVKNFNNCRIVITLAKLKNDLLEEIENGNGELNLNFCWYHCDWSKDDCNDDSEVFILQESDQIALCKNLKPHAEMSSIMQDFDDGTLQDLQDLIIEVPLQNIKIGDGEMKNKCCVCNKIITEERWESHISEQHCYMAWRPGSILNLDDENLLNKLKKRLKDVGHLTCTFCGAEKFKRLKKFIVHIKECVNFKVTDFSESSALMTKCGVCGLSVEMSKWIDHIAISHSYKAWKDSEEPLDLDNEDAINTHLKKICKHFGGLYCSKCGVHYKFLKYYLAHQKMCRHDIIIGNDPAVKINIMREHEAAEKVVDESLHSIEQTKSKNESLIQNSSDKNSIFTSTPKQNSMKSKLKDTKSDRQLKNVKRQKAESSGILCSKNPSKNPEPHTSATTSNKTHDSNKKLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNNVPQFQLDAVSPIQKKRGRKRISVAAADDDNDVNKVRNNSKDNSFSKKHRRNSGSMSTGKELEVIIEPTNSKTSARVGRLQNDSNEKIPITERRSVSNSKRKQKSGDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGVCLEVVSSSSWIDHIANTHYYLAWKDGTNPINLNDEDVVKNHLFEIREQCKTFTCKKCQIQRKYPKAFIKHVQECDPEKFASIAASLGMNASEVSLDLSDSTLESKNNAKLTGTLNCGVCFKEVEAKKWIFHIFKYHDYLAWVEGETPLDIKNEEEVQQFLYKINRECGGLTCSKCGLVRKYVKSYQQHFETCSGSNLFLENVDGDSVVQCAICSKEVMYAHWKSHAMSEHYNIAWIEGSVPLDLNNFYAVESRLKAYSKIHKLVCKNCGTSRTSCYGFYAHILTCGKSEEETERFKEVCEVCQNKYLCVYKSQHMAAHREKEYAIQRKLKLVEEKKKKKECEQVPQDRRRAAKKALDVIENYNSKNEDGENVCGKCGAHTEQGTEHVCCKTEEISSDSDVSVKMENVSDDDDESDYTEIDSSVSDVEEEQLKELKKKKPEIVSSITAVSKATRIPYQVSDIPTYLQSSYLDFCQTHLTGETLFPEWEKFDYVPLDQDGINKYLPKIETSCEVKFLDNTSWKTFKRFESWKREKHRIIFVGGSIHCIAWVPPHVEDKTGEEGMYLAVACHAAGDSPRYNYDVTREHAGLLQIWDFGNIQTSLPKFVFGLAHDFGVVWAMDWCPSGARDLMVDGAVDKICKLGLLAAACSNGSAYIFPVPYPSTLPDIESIIYKVIPVAELRLEMNVNRKKYQATSISWSPQKGHSMIIVGYSDGTTAQYDIKTESPLLRSTENEVTIIYPYHDDRIHKTAVTGVGVFPGGDGGTSATCSGSTTGAHVEFGVGATAGRTGSLYTAFCCTNISFSPLWPSTIMAAESTMGVSQMVNELEWGAGGRRLGVMRAGAACALCGRLAHAAPPLVRVLRTHPAYTDVKKLIVASIEMIPINGRRKIQTDELCMKVEPLDYDEAVKEYGLHIKKIHRKDKVAMAKASMLSTTPCPERFPLADITCLAFCPTIRHHDKLAVGLHSGILLLFTL

Summary

Uniprot
H9J8V8  
Pubmed
19121390   
EMBL
BABH01004976    BABH01004977    BABH01004978   
Proteomes
UP000005204   
PRIDE
H9J8V8   
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
SUPFAM
SSF50978   SSF50978       
Gene 3D
2.130.10.10    
ProteinModelPortal
H9J8V8  

Ontologies

KEGG
101743413    K15200 general transcription factor 3C polypeptide 2 | (RefSeq) uncharacterized LOC101743413
GO
GO:0005515   GO:0005524   GO:0006468   GO:0004674   GO:0043565   GO:0043401   GO:0003677   GO:0003707   GO:0004651   GO:0005634   GO:0003676  

Topology

Length:
1749
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01761
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.00014
outside
1  -  1749
 
 

Population Genetic Test Statistics

Pi
272.071141
Theta
187.335338
Tajima's D
1.28358
CLR
0.610576
CSRT
0.736263186840658
Interpretation
Uncertain
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