Gene

KWMTBOMO01873

Pre Gene Modal

BGIBMGA005954

Annotation

PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(-):7173857-7177958      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.499

CDS

ATGTCTGTTCGAGCGTTACCTCCGGAGCTAGCAGAAAAAGCCCGCAAAGAGTTAAATGAAGATCCAAGCAGGATTAATAGTGACATTCAACACCTAAAGGACTGGTTGTCCAAACAGCCACATTTACGCGCTAGAACAGACGATCAATGGCTTTTAGCATTTCTACGAGGATGCAAGTACAGCTTGGAAAGGACGAAGGAAAAATTGGATTTATATTATTCCGTCCGTACAACTGCACCTGAATTATTCAGTATAAAGCCGAGCAATCCATTATTTGATGAAATATTAAGTTTGGGGGCAATATTGATATTACCTAAGACTGCAACTTCTGATTCACCACGTGTCAGTCTGATCATACCTGGTCGATATGATGCTGATAAGTACAACATTACCGATGTCATGGCTGTATCCTTTGTCTTACAAAAGATTATTATGATGGAAGACGACAACGCAATAGTGGCCGGCATTTTGTCAATTTTAGATTTAGATACTGTAAAAATGGGTCATTTCTTACAAATGACTCCAATGGTCATGAAAAAAATGGTGGTTGCTTCTCAGCTCTACGTCCACAACCAGAATTATGAAGAGATGTACAAATATATCCCTAAGGACATTTTACCAGTAGAATATGGCGGGAGCGGTGGTTCTATTGAAGAAATTATAGATTACTGGAGGAAAAAAGTAAAGGAATACAGTGACTGGTTGGAAGAAGATGATCAATATGGTACGGACGAGTCCAAGCGACCAGGGAAACCGAAGACCGCTGAGGATATGTTCGGCGTTGAGGGTTCCTTCAGGCAACTTGAATTCGATTAA

Protein

MSVRALPPELAEKARKELNEDPSRINSDIQHLKDWLSKQPHLRARTDDQWLLAFLRGCKYSLERTKEKLDLYYSVRTTAPELFSIKPSNPLFDEILSLGAILILPKTATSDSPRVSLIIPGRYDADKYNITDVMAVSFVLQKIIMMEDDNAIVAGILSILDLDTVKMGHFLQMTPMVMKKMVVASQLYVHNQNYEEMYKYIPKDILPVEYGGSGGSIEEIIDYWRKKVKEYSDWLEEDDQYGTDESKRPGKPKTAEDMFGVEGSFRQLEFD

Uniprot

H9J8W2   H9J8W1   A0A194PLN6   A0A194R1T7   A0A2A4JH87   A0A1E1W1H6   + More
A0A2H1WW13   A0A2H4RMP4   A0A194PME6   A0A2H4RMN9   A0A194PRZ7   A0A194R225   A0A0L7KQJ3   A0A194PKE4   A0A212F0Q8   A0A194R7A0   A0A2A4IU45   A0A212F6T3   A0A194R2K1   A0A2A4ISF2   A0A2W1BHW9   A0A2W1BIJ4   A0A1W7R8C4   A0A212F6S7   T1E7Q0   A0A1L8DZG8   A0A1L8DZ17   Q16Z99   A0A0T6ATJ8   A0A2H1WW03   A0A336K545   W5JVC8   A0A1B0CUX6   A0A1B0GLZ3   A0A182J0U4   Q16ZA0   A0A182U0Q4   A0A084WB39   A0A182KT05   A0A182UMQ1   A0A182KT08   A0A182FW74   A0A182VM76   A0A182UHL4   A0A182KD53   A0A2H1WW22   A0A182MLC5   A0A182QZB3   Q5TMY7   W5JX38   A0A182QP18   A0A182PGB9   A0A2M4CYG7   A0A182HPS1   A0A182X007   A0A194R3C9   A0A182WD92   A0A182MXC3   A0A2A4IT19   A0A2H4RMV4   A0A182RXC9   A0A194PLP1   A0A1B0CVS3   A0A182LZL5   A0A2W1BN19   A0A182YQ85   A0A1Q3G2T7   A0A084WB40   A0A182IQP8   A0A0K8TNI0   A0A2W1BP80   A0A1I8Q731   A0A2A4JCS0   A0A0M4ELC6   A0A194PKQ7   A0A1J1HGT4   B3ME36   A0A2H4RMP0   A0A1J1HK45   A0A0T6ATN3   B3M540   A0A084VZS0   A0A1I8P9L0   A0A1I8N7K9   A0A1W4W5W2   A0A0J9RMX9   A0A1L8DZ63   Q2MGL8   A8E768   A0A0A1WU57   B4PD52   A0A1L8EGD3   A0A1I8M1T5   A0A182QUH0   A0A182GJ38   B3NJG4   B4NWJ2   B4MS67   W8C7Z2  

Pubmed

19121390    26354079    29136137    26227816    22118469    28756777    + More
17510324    20920257    23761445    24438588    20966253    12364791    25244985    26369729    17994087    18057021    25315136    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25830018    17550304    26483478    24495485   

EMBL

BABH01004969    BABH01004970    BABH01004971    KQ459601    KPI93908.1    KQ460870    + More
KPJ11748.1    NWSH01001584    PCG70793.1    GDQN01010231    GDQN01007468    GDQN01002291    GDQN01001042    JAT80823.1    JAT83586.1    JAT88763.1    JAT90012.1    ODYU01011491    SOQ57250.1    MG434598    ATY51904.1    KPI93909.1    MG434597    ATY51903.1    KPI93910.1    KPJ11747.1    JTDY01007407    KOB65224.1    KPI93911.1    AGBW02011047    OWR47335.1    KPJ11746.1    NWSH01007555    PCG62918.1    AGBW02009977    OWR49434.1    KPJ11749.1    PCG62917.1    KZ150033    PZC74679.1    PZC74678.1    GEHC01000255    JAV47390.1    OWR49433.1    GAMD01002852    JAA98738.1    GFDF01002409    JAV11675.1    GFDF01002408    JAV11676.1    CH477495    EAT39961.1    LJIG01022828    KRT78512.1    SOQ57249.1    UFQS01000124    UFQT01000124    SSX00096.1    SSX20476.1    ADMH02000337    ETN66915.1    AJWK01029765    AJVK01009188    EAT39960.1    ATLV01022312    KE525331    KFB47433.1    SOQ57248.1    AXCM01009708    AXCM01009709    AXCN02001683    AAAB01008986    EAA43295.4    ADMH02000039    ETN68020.1    GGFL01006202    MBW70380.1    APCN01003270    KPJ11745.1    PCG62915.1    MG434653    ATY51959.1    KPI93913.1    AJWK01031086    PZC74677.1    GFDL01000931    JAV34114.1    KFB47434.1    GDAI01001910    JAI15693.1    PZC74676.1    NWSH01002089    PCG69222.1    CP012525    ALC44235.1    KPI93912.1    CVRI01000002    CRK86620.1    CH902619    EDV35431.1    KPU75643.1    MG434599    ATY51905.1    CRK86617.1    KRT78511.1    CH902618    EDV39519.1    ATLV01018955    KE525256    KFB43464.1    CM002912    KMY96769.1    GFDF01002350    JAV11734.1    AE014296    ABC66124.1    BT031010    ABV82392.1    GBXI01012237    JAD02055.1    CM000159    EDW92800.1    GFDG01001038    JAV17761.1    AXCN02001905    JXUM01244789    KQ636530    KXJ62416.1    CH954178    EDV50126.2    CM000157    EDW89537.1    CH963850    EDW74956.1    GAMC01007758    GAMC01007756    JAB98799.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000037510    UP000007151    + More
UP000008820    UP000000673    UP000092461    UP000092462    UP000075880    UP000075902    UP000030765    UP000075882    UP000075903    UP000069272    UP000075881    UP000075883    UP000075886    UP000007062    UP000075885    UP000075840    UP000076407    UP000075920    UP000075884    UP000075900    UP000076408    UP000095300    UP000092553    UP000183832    UP000007801    UP000095301    UP000192221    UP000000803    UP000002282    UP000069940    UP000249989    UP000008711    UP000007798   

PRIDE

H9J8W2    H9J8W1    Q2MGL8   

Pfam

PF00650   CRAL_TRIO

Interpro

IPR036273   CRAL/TRIO_N_dom_sf        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR011074   CRAL/TRIO_N_dom       
IPR001251   CRAL-TRIO_dom       

SUPFAM

SSF46938   SSF46938        + More
SSF52087   SSF52087       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

H9J8W2   H9J8W1   A0A194PLN6   A0A194R1T7   A0A2A4JH87   A0A1E1W1H6   + More
A0A2H1WW13   A0A2H4RMP4   A0A194PME6   A0A2H4RMN9   A0A194PRZ7   A0A194R225   A0A0L7KQJ3   A0A194PKE4   A0A212F0Q8   A0A194R7A0   A0A2A4IU45   A0A212F6T3   A0A194R2K1   A0A2A4ISF2   A0A2W1BHW9   A0A2W1BIJ4   A0A1W7R8C4   A0A212F6S7   T1E7Q0   A0A1L8DZG8   A0A1L8DZ17   Q16Z99   A0A0T6ATJ8   A0A2H1WW03   A0A336K545   W5JVC8   A0A1B0CUX6   A0A1B0GLZ3   A0A182J0U4   Q16ZA0   A0A182U0Q4   A0A084WB39   A0A182KT05   A0A182UMQ1   A0A182KT08   A0A182FW74   A0A182VM76   A0A182UHL4   A0A182KD53   A0A2H1WW22   A0A182MLC5   A0A182QZB3   Q5TMY7   W5JX38   A0A182QP18   A0A182PGB9   A0A2M4CYG7   A0A182HPS1   A0A182X007   A0A194R3C9   A0A182WD92   A0A182MXC3   A0A2A4IT19   A0A2H4RMV4   A0A182RXC9   A0A194PLP1   A0A1B0CVS3   A0A182LZL5   A0A2W1BN19   A0A182YQ85   A0A1Q3G2T7   A0A084WB40   A0A182IQP8   A0A0K8TNI0   A0A2W1BP80   A0A1I8Q731   A0A2A4JCS0   A0A0M4ELC6   A0A194PKQ7   A0A1J1HGT4   B3ME36   A0A2H4RMP0   A0A1J1HK45   A0A0T6ATN3   B3M540   A0A084VZS0   A0A1I8P9L0   A0A1I8N7K9   A0A1W4W5W2   A0A0J9RMX9   A0A1L8DZ63   Q2MGL8   A8E768   A0A0A1WU57   B4PD52   A0A1L8EGD3   A0A1I8M1T5   A0A182QUH0   A0A182GJ38   B3NJG4   B4NWJ2   B4MS67   W8C7Z2  

PDB

3W68     E-value=1.4355e-05,     Score=114

KEGG

101736284    no KO assigned | (RefSeq) alpha-tocopherol transfer protein-like

GO

Length:

271

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14836

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00892

outside

1  -  271

 

 

Pi

210.57218

Theta

173.012788

Tajima's D

0.937374

CLR

0

CSRT

0.644717764111794

Interpretation

Uncertain