SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01871
Pre Gene Modal
BGIBMGA005956
Annotation
PREDICTED:_alpha-tocopherol_transfer_protein-like_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 3.11
 

Sequence

CDS
ATGAAGGGTAGATCGATATCTGAGGGCTTGAAGCGAGTTGCGGCGGAAGAACTGAACGAAGATCCCAAGAAAATTCCTTTTTATATAAAGGCCATAAGAGATTGGTTGCAAGAGCAGCCTCATTTGCGTTCGATTAAAGCTTCGGATCAGTGGCTGATCGGATTCCTACGCGGGAGCAAATATAATTTAGATAAATGTAAAAAGAAACTGGATAAGTATTATACTTTGAAATCGGCCGCTCCAGAGTTCTTCAAAAATCGAGACCCATTAGATCCGTCAATGCAAGCGATGCTAAAGGCGGGAATATTCTTACCTCTAAGGAATTGCGTCACAGAAGACGGCCCTCGGCCTTGTTTAGTCAGAATGTCGGAACAGTATAAATCTAAAAGACCTTTATCTGATCTCATAAAGATCAGTTTTATGTTTGCTGAATTAATGCTCTTGGAAGATGACAACTTTAACATCGCGGGGCAGATAGTTCTGGTGGATCTAAGCGATACTGGTTTAACTTTATTGACACAGTTCAGTCCTAGTGTTGCGAGGAAGACATTTTTGTACGCGGAAAGGGCTCTGACAGTTCGCATGAAAAGCATTTATGTGTTGAACATGTCACGTGGCTTAAAGGCTACCCTGAACGTTGTCAAGATGTTGCTGGGACAGAAAATAAGAAATAGGCTACAAATATACGATGAGAATTACGGAAAATTATACAATTACGTACCAGAATCAATATTGCCAGCCGAGTATGGAGGTGATATGGGTGACGTTCAAGAACTAACAGATTACTGGAAAACGAAAATGGAAAGCTATAGAAGCTGGTTTTTACTGCAAGATGAAAATTTTGAAAGGGTTACGGCAAACATCAATACTCGCAGTCCTTCACCGACTGCGACAGAAAACAACGAAGAAAATCGAACATTTCGACGATTAGAGTTAGATTAA
Protein
MKGRSISEGLKRVAAEELNEDPKKIPFYIKAIRDWLQEQPHLRSIKASDQWLIGFLRGSKYNLDKCKKKLDKYYTLKSAAPEFFKNRDPLDPSMQAMLKAGIFLPLRNCVTEDGPRPCLVRMSEQYKSKRPLSDLIKISFMFAELMLLEDDNFNIAGQIVLVDLSDTGLTLLTQFSPSVARKTFLYAERALTVRMKSIYVLNMSRGLKATLNVVKMLLGQKIRNRLQIYDENYGKLYNYVPESILPAEYGGDMGDVQELTDYWKTKMESYRSWFLLQDENFERVTANINTRSPSPTATENNEENRTFRRLELD

Summary

EMBL
BABH01004964    BABH01004965    NWSH01002089    PCG69222.1    KZ150033    PZC74676.1    + More
KQ459601    KPI93913.1    KQ460870    KPJ11745.1    KT943553    ALQ33311.1    AGBW02007898    OWR54442.1    BABH01004960    BABH01004961    OWR54443.1    JTDY01001571    KOB73495.1    BABH01004962    BABH01004963    LJIG01022828    KRT78512.1    ODYU01011491    SOQ57246.1    SOQ57250.1    CH477495    EAT39960.1    AXCM01009708    APCN01003270    AXCN02001683    ATLV01022312    KE525331    KFB47434.1    AJWK01029765    ADMH02000039    ETN68020.1    GDAI01001910    JAI15693.1    AAAB01008986    EAA43295.4    GEHC01000255    JAV47390.1    ADMH02000337    ETN66915.1    GFDF01002350    JAV11734.1    GGFL01006202    MBW70380.1    EAT39961.1    UFQS01000124    UFQT01000124    SSX00096.1    SSX20476.1    KFB47433.1    GAMD01002852    JAA98738.1    AJVK01009188    DS232422    EDS41598.1    KPJ11748.1    AXCM01009709    AJWK01031086    GEZM01098890    JAV53680.1    AXCP01008672    MG434598    ATY51904.1    KPJ11747.1    KPI93910.1    GFDL01000931    JAV34114.1    GFDF01002409    JAV11675.1    GEZM01100639    JAV52829.1    GBXI01012237    JAD02055.1    AJWK01000036    AGBW02009977    OWR49434.1    AJVK01005789    ATLV01018955    KE525256    KFB43464.1    AGBW02011047    OWR47335.1    CVRI01000002    CRK86617.1    MG434613    ATY51919.1    KRT78511.1    NEVH01017447    PNF24412.1    CRK86620.1    GFDF01002408    JAV11676.1    NWSH01001584    PCG70793.1    JXUM01244789    KQ636530    KXJ62416.1    GFDF01002368    JAV11716.1    GFDF01002367    JAV11717.1    EDS41596.1    CRK86619.1    EAT39957.1    AXCN02001905    APCN01005308    KPI93909.1    AAAB01008968    EAA13214.4    AJVK01009186    AJVK01009187    MG434597    ATY51903.1    CRK86618.1    GAMD01000080    JAB01511.1    GEZM01078068    GEZM01078066    JAV63028.1    SOQ57249.1    GEZM01080375    JAV62183.1    GANO01003710    JAB56161.1    GDQN01010231    GDQN01007468    GDQN01002291    GDQN01001042    JAT80823.1    JAT83586.1    JAT88763.1    JAT90012.1    MG434599    ATY51905.1    GAKP01006292    JAC52660.1    GEZM01057510    JAV72290.1   
Pfam
PF00650   CRAL_TRIO
Interpro
IPR001251   CRAL-TRIO_dom        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR011074   CRAL/TRIO_N_dom       
SUPFAM
SSF46938   SSF46938        + More
SSF52087   SSF52087       
Gene 3D
PDB
1R5L     E-value=5.44448e-09,     Score=144

Ontologies

GO

Topology

Length:
313
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01416
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01532
outside
1  -  313
 
 

Population Genetic Test Statistics

Pi
263.196057
Theta
43.885886
Tajima's D
1.07177
CLR
108.96633
CSRT
0.675866206689666
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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