Silkworm Genome Informatics Database

Gene

KWMTBOMO01869

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr4(+):7133709-7135715 View in EpiBrowser

Location in the cell

Extracellular Reliability : 4.03 Nuclear Reliability : 4.16

CDS

ATGCATGAAGGTAACTTCTGCAGGTCTAGCCTTCCACCACTGAGTAAGTCCAATGACAGTCTGGCTCATAGTGCGAAGGAGAAGGCTGACCTTCTGGTCAAGCTCTTTGCCTCATACTCTACTTTGGATGACGGAGGAGCCACGCCGCCCAACATCTCCCGGTGTGACAGCTCCATGCCTGAGATTCGCATCACACAGCGTGCGGTCAGACAGGAGCTTCGGCTTCTTGATGTCCATAAGTCGAGTGGGCCAGATTGCATCCCCGCAGTGGTTCTAAAAACATGCGCCCCTGAATTGACACCCGCGCTAACGCGTCTATATCGCCTCTCGTACAATACCAACAGGGTTCCGTCTTCATGGAAGACTGCTCATGTCCACCCTATCCTCAAGAAGGGTGACCGGTCGGACCCCTCTAATTACAGACCTATCGCGATAACTTCCTTGCTTTCCAAGTTGATGGAGCGAATCATAAACATCCAACTTCTTAAGTATCTTGAGGATCGCCAGCTGATCAGTGACTGGCAGTACGGTTTCCGTCATGGTCGCTCAGCTGGCGATCTTCTTGTATACCTCACACATAAATGGGCTGAAGCCTTGGAAAGCAAGGGCGAGGCTCTCGCTGTGAGCCTTGACATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGCTTCCAGCATACGGGATCCCTGAGGGACTCTGCAAGTGGATCGCTAGCTTTTTGGATGGACGGAGCATCACGGTCGTTGTAGACGGTGATTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGTAGCGTGGTGCAAGAGAGGCGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGTCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCAGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAA

Protein

MHEGNFCRSSLPPLSKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPILKKGDRSDPSNYRPIAITSLLSKLMERIINIQLLKYLEDRQLISDWQYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPAYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRVVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHWSHCGHPQCVSRGLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY

Uniprot

Q6UV17 A0A3D5S1K1 A0A0P4VTV9 T2M4I6 A0A0P4VX79

Pubmed

30148503 24065732

EMBL

AY359886 AAQ57129.1 DPOC01000269 HCX22453.1 GDRN01111334 JAI56796.1 + More
HAAD01000593 CDG66825.1 GDRN01111326 JAI56798.1

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219 SSF56219 + More
SSF57667 SSF57667

Gene 3D

3.60.10.10

ProteinModelPortal

Q6UV17 A0A3D5S1K1 A0A0P4VTV9 T2M4I6 A0A0P4VX79

PDB

6AR3 E-value=1.49185e-05, Score=117

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0016021 GO:0003676

PANTHER

PTHR45951:SF3

Length:

562

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01319

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00155

outside

1 - 562

Pi

130.392515

Theta

4.661409

Tajima's D

1.092135

CLR

0

CSRT

0.710614469276536

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree