SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01869
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 4.03 Nuclear   Reliability : 4.16
 

Sequence

CDS
ATGCATGAAGGTAACTTCTGCAGGTCTAGCCTTCCACCACTGAGTAAGTCCAATGACAGTCTGGCTCATAGTGCGAAGGAGAAGGCTGACCTTCTGGTCAAGCTCTTTGCCTCATACTCTACTTTGGATGACGGAGGAGCCACGCCGCCCAACATCTCCCGGTGTGACAGCTCCATGCCTGAGATTCGCATCACACAGCGTGCGGTCAGACAGGAGCTTCGGCTTCTTGATGTCCATAAGTCGAGTGGGCCAGATTGCATCCCCGCAGTGGTTCTAAAAACATGCGCCCCTGAATTGACACCCGCGCTAACGCGTCTATATCGCCTCTCGTACAATACCAACAGGGTTCCGTCTTCATGGAAGACTGCTCATGTCCACCCTATCCTCAAGAAGGGTGACCGGTCGGACCCCTCTAATTACAGACCTATCGCGATAACTTCCTTGCTTTCCAAGTTGATGGAGCGAATCATAAACATCCAACTTCTTAAGTATCTTGAGGATCGCCAGCTGATCAGTGACTGGCAGTACGGTTTCCGTCATGGTCGCTCAGCTGGCGATCTTCTTGTATACCTCACACATAAATGGGCTGAAGCCTTGGAAAGCAAGGGCGAGGCTCTCGCTGTGAGCCTTGACATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGCTTCCAGCATACGGGATCCCTGAGGGACTCTGCAAGTGGATCGCTAGCTTTTTGGATGGACGGAGCATCACGGTCGTTGTAGACGGTGATTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGTAGCGTGGTGCAAGAGAGGCGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGTCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCAGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAA
Protein
MHEGNFCRSSLPPLSKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPILKKGDRSDPSNYRPIAITSLLSKLMERIINIQLLKYLEDRQLISDWQYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPAYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRVVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHWSHCGHPQCVSRGLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF00096   zf-C2H2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
Gene 3D
PDB
6AR3     E-value=1.49185e-05,     Score=117

Ontologies

Topology

Length:
562
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01319
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00155
outside
1  -  562
 
 

Population Genetic Test Statistics

Pi
130.392515
Theta
4.661409
Tajima's D
1.092135
CLR
0
CSRT
0.710614469276536
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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