SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01867
Pre Gene Modal
BGIBMGA005958
Annotation
PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.106 Nuclear   Reliability : 2.488
 

Sequence

CDS
ATGGAGATACGTCCTTTATCAGATGCTCTTCGTAAGAAAGCGAGGGAAGAGATTAATGAGAATCCAGAAACACTAGTTTCGAATTTCAATGAACTGAGAGAATGGCTAAACGAACACCCGCAACTAAAATCAGAAATAATCTCTGACCAATGGTTGGTCGCTTTCCTTCGCGGCAGTAAACATAATTTGGAAAAATGCAAATCAAAAATAGAAAGGTACTACACTTTGAGCACTGCTGCACCAGAATTTTATGCAAACAGAGATCCTTTGGATCCGCAAATACAGGAATTATTAAAATTAGGTTTGTTTCTGCCGCTAAAGAAATGCGCAAGTGAAGATTCACCTCGAATAGTGATAGTGCGAGTGGGTGAGGTAAATAAAGTGCACGGAAGTTTGTCTGATATTTGTAAAATCGGACTTATGATAGCTGAGATATTGTTACTTGAAGATGATAATTTTACTATATGTGGCGAGGATCTTGTCACCGACTTGAAAGACATGGGCTTCGGTTTGTTAAGACAATGGACACCCGCATTCGCCAGAAAGCTGTTTATGTGTTTTGAAAATGCACTAACTATCCGTATGGCCAGAATTGACCTGCTAAACGCTCCTATTGGAATGAAAACAGCAGTTGCTATTTTCAAATTATTTTTAAAGGAAAAATTGAAGAAAAGGATATACATATACAACGAGGACTATGAAGAGATGTTTAAATACATACCGAAATCATTGCTGCCTAAAGAATACGGAGGCACTGAAGGTACCTTACAAGATTTGACAGATCATTGGAAGAACAAAGTGGAAAGCTACCGGTCTTGGTATTTGCGAGAGAATCTAAAAGATTGA
Protein
MEIRPLSDALRKKAREEINENPETLVSNFNELREWLNEHPQLKSEIISDQWLVAFLRGSKHNLEKCKSKIERYYTLSTAAPEFYANRDPLDPQIQELLKLGLFLPLKKCASEDSPRIVIVRVGEVNKVHGSLSDICKIGLMIAEILLLEDDNFTICGEDLVTDLKDMGFGLLRQWTPAFARKLFMCFENALTIRMARIDLLNAPIGMKTAVAIFKLFLKEKLKKRIYIYNEDYEEMFKYIPKSLLPKEYGGTEGTLQDLTDHWKNKVESYRSWYLRENLKD

Summary

EMBL
BABH01004960    BABH01004961    BABH01004962    BABH01004963    BABH01004964    KQ459601    + More
KPI93913.1    KZ150033    PZC74676.1    NWSH01002089    PCG69222.1    KQ460870    KPJ11745.1    KT943553    ALQ33311.1    AGBW02007898    OWR54443.1    OWR54442.1    ODYU01011491    SOQ57246.1    LJIG01022828    KRT78512.1    GEHC01000255    JAV47390.1    BABH01004965    AXCN02001683    CH477495    EAT39961.1    EAT39960.1    KPJ11748.1    AXCM01009708    AXCM01009709    AAAB01008986    EAA43295.4    CVRI01000002    CRK86620.1    SOQ57250.1    AGBW02009977    OWR49434.1    GDAI01001910    JAI15693.1    ATLV01022312    KE525331    KFB47433.1    NWSH01001584    PCG70793.1    APCN01003270    CRK86617.1    MG434598    ATY51904.1    GAMD01002852    JAA98738.1    KPI93909.1    JTDY01001571    KOB73495.1    KRT78511.1    ADMH02000337    ETN66915.1    ADMH02000039    ETN68020.1    GFDL01000931    JAV34114.1    GDQN01010231    GDQN01007468    GDQN01002291    GDQN01001042    JAT80823.1    JAT83586.1    JAT88763.1    JAT90012.1    MG434597    ATY51903.1    KPI93910.1    GEZM01100639    JAV52829.1    KPI93911.1    GEZM01012311    GEZM01012309    JAV92997.1    KPJ11746.1    GEZM01012310    JAV92996.1    AGBW02011047    OWR47335.1    CRK86619.1    AJWK01000036    GFDF01002350    JAV11734.1    AJVK01009188    NEVH01017447    PNF24412.1    GFDF01002367    JAV11717.1    GFDF01002368    JAV11716.1    GGFL01006202    MBW70380.1    ATLV01018955    KE525256    KFB43464.1    KFB47434.1    GFDF01002408    JAV11676.1    AJVK01009186    AJVK01009187    AJWK01029765    DS232422    EDS41596.1    KPJ11747.1    EAT39957.1    GFDF01002409    JAV11675.1    JXUM01244789    KQ636530    KXJ62416.1    AXCP01008672    AXCN02001905    UFQS01000124    UFQT01000124    SSX00096.1    SSX20476.1    AJVK01005789    CRK86627.1    GEZM01080375    JAV62183.1    AJWK01031086    CRK86618.1    CH940647    EDW69397.1    APCN01005308    AAAB01008968    EAA13214.4    NWSH01007555    PCG62917.1    GEZM01098890    JAV53680.1    EDS41598.1   
Pfam
PF00650   CRAL_TRIO
Interpro
IPR001251   CRAL-TRIO_dom        + More
IPR036273   CRAL/TRIO_N_dom_sf       
IPR036865   CRAL-TRIO_dom_sf       
IPR011074   CRAL/TRIO_N_dom       
SUPFAM
SSF52087   SSF52087        + More
SSF46938   SSF46938       
Gene 3D
PDB
3W68     E-value=3.90324e-11,     Score=162

Ontologies

GO

Topology

Length:
281
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.85242
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01118
outside
1  -  281
 
 

Population Genetic Test Statistics

Pi
250.228538
Theta
187.006405
Tajima's D
1.234703
CLR
0.142903
CSRT
0.724613769311534
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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