SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01866
Pre Gene Modal
BGIBMGA005959
Annotation
PREDICTED:_FYVE?_RhoGEF_and_PH_domain-containing_protein_3-like_[Bombyx_mori]
Location
Bomo_Chr4(-):7063680-7103388      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.563
 

Sequence

CDS
ATGACACAAGAAGAGTTTTGTACTCGTTTCAGTGAAGAGCTACGTGTGTCGCCAGAGAATTTAACTGACGATAACGATGTTGTCGTAAGAAAGAAAAGGGTAACGAGTGTTAAAGAGATGATTCTGCGTTTTGAAAAGACAAACAGTAATATTCTCGATGATTCTTTGGAAAGGTCCAAAGAGCCTTCTTTAGGTAGTTTGACGAGTGTTGTCAATCCGATTCAGGCCCATTACCAACATTTATGTCCCGCGGCTAGGTCACAAAATAGAAATTCAAATGTATCGGTTAACTCAATTTTATCAAATGCGTCGGAAAATAGTAACGAATCCAGTTCGTCGGGGTTTGTATCTGATAGAAAATCAGGTGGAGATACCTTATTGCCGCACAGGCCTGCACCGCCACCTCCATTACCTTTCAAAGATAGCAAAAAATCTCTAAACAACGAAGAAGCGACCTTAAGAGAAAGGCGATTTTCATTCACAACGCCGTCTTCTTCGCCCGTAACGACAAGGCGCAGTCGGCAGCCTCCTGTGATGAGGAAAAAATCAACTGCAACAAATCAAGGACATTCGGGTGAAACGCATTGGTCTTACGGTGTTAGGCAAAGTGATTTAGAAAAGTTATTGAGATTGAAACGTTCAGAAACTTCGGACAACGAAGAAGACGCTAAGATAGTTAACAATATTTCGTTGGAAAGTGATAGTAGCAGTAATAGTAGTAGTAGTAGTGGTAGTGACGATGATTCGCACAGTGATAGTAATTACAGTAACGGGAAAGAATATCTAGTGAATTTGGAAGACGGTAGAACTGATACTCTCTCAACGGATCATTCAACGGACACCTTGATTAATGAAAGAGACAGTGAACCAGGGGATGATTTGTCTATCGGTTCGGGTGAATCTGGTGCTCCCAGCAATTTCGATAATGTTAGCATTAAATCAATTTCATCTTTAGACATGATACCATATCAAAAATATGATAGCATAACTGTGTCTTCGGACGAGTTCGGTTCGGAAGTATGTCACGCTCCTGACACTGAATTTCTAACTGTGAGTGCAGTGAACGAATGGTGCATTTCTCAATCTGCAGCAGAACCGGTATTGCTGCCACTTGAATCCAAAAAAGAGAAATATAAAAGACGACTAACAGAACGTGTCAACGAGCTCCTACACACAGAAAACGTGTACGTGGAGAGGTTACGACACGTCGTAGAGGACTACATACCTGTCATGGAGAATCAGGACTTAGCGCCGTCATTCAAAGGCTTGAAGCCAAACATATTCGGGAACATTGAGAGAATATTCCGGTTTCACTCGGAGGAGTTCCTGCCCGCGTTGCGGGACTGCGAGAATGATCTCAGGAAGCTAGGGCAGTGCTTTAGACGATTTGAAAAAAGGTTCAATATGTACGTAATGTACTCTAGAAATAATAAGAGAGCCACGAGACTGGTGTTTGAGCATAAACAATTCTTTCAGGAAAGACAATTCGAATTGGGTGACAGATTAGACTTGTCAAGCTATTTACTAGAACCAGTCCAGAGACTTCCGAGGTACAAACTATTTTTAGCCGATCTAGTGAAGACGTACACGAATTATGAGAACGAAAGATGCGAATCAGATTCAAGGATATCAAAACTTAGCGTTGACAGCGACGAAACCGGAGGAAGCAACGGAGACGTATCGGAAAACGACGAAACCCCTTTGGAAAGTCTAAAGAAAGCTAAAACTATGATAGAACGCGTGCTGACAGCTGTTGATGAAATAATGGCGTTAGAAAACATAACCGACTGTCCGCATTACCTAAACCTTCTGAACCAAGGTCGACTGCTTCGTCAGAACGAGTTCTACGCTATGGACACGGCTCGGCGCTGGCGACAGCTCATGAGGATATTCCTCTTTGACAAACTCGTTCTCATCACTGCTGTCTATAGGAAGCAACAAAGGGTAGAGTACTTCATATACAAAGACCACATCTCAGTGGACGACCTCGGTATCACGGCCAAGGAACACGACCAGCACAAATTTACCATTTGGTATAAGAAGAGAAACCTGAAGTCCTATAAGCTGGAGACGAATGATCCAGTCATCAGGAATTCTTGGGTCCAGGATATAACATCACTACTGTGGGAACAGGCTATGCAAAAGAAAGAGCTTCTTCAACAGCAGCGAAGCAAACGGATATCGATGGTTTCAATGGACAGTCAAGCCTCCGTCGATTCGGAAAGGAACGATGACAAATATAATTCACTGCGCGGTGTCCCGGGTGAGGTTCGCCGTTCCGGTGATAAGAAAGTGCGTAGGACAACTTGGTACTGCGAATGA
Protein
MTQEEFCTRFSEELRVSPENLTDDNDVVVRKKRVTSVKEMILRFEKTNSNILDDSLERSKEPSLGSLTSVVNPIQAHYQHLCPAARSQNRNSNVSVNSILSNASENSNESSSSGFVSDRKSGGDTLLPHRPAPPPPLPFKDSKKSLNNEEATLRERRFSFTTPSSSPVTTRRSRQPPVMRKKSTATNQGHSGETHWSYGVRQSDLEKLLRLKRSETSDNEEDAKIVNNISLESDSSSNSSSSSGSDDDSHSDSNYSNGKEYLVNLEDGRTDTLSTDHSTDTLINERDSEPGDDLSIGSGESGAPSNFDNVSIKSISSLDMIPYQKYDSITVSSDEFGSEVCHAPDTEFLTVSAVNEWCISQSAAEPVLLPLESKKEKYKRRLTERVNELLHTENVYVERLRHVVEDYIPVMENQDLAPSFKGLKPNIFGNIERIFRFHSEEFLPALRDCENDLRKLGQCFRRFEKRFNMYVMYSRNNKRATRLVFEHKQFFQERQFELGDRLDLSSYLLEPVQRLPRYKLFLADLVKTYTNYENERCESDSRISKLSVDSDETGGSNGDVSENDETPLESLKKAKTMIERVLTAVDEIMALENITDCPHYLNLLNQGRLLRQNEFYAMDTARRWRQLMRIFLFDKLVLITAVYRKQQRVEYFIYKDHISVDDLGITAKEHDQHKFTIWYKKRNLKSYKLETNDPVIRNSWVQDITSLLWEQAMQKKELLQQQRSKRISMVSMDSQASVDSERNDDKYNSLRGVPGEVRRSGDKKVRRTTWYCE

Summary

Uniprot
A0A2A4JCE2   A0A2W1BLY8   A0A194PMF1   A0A194R2J6   A0A2A4JAW9   A0A2A4JBT5   + More
A0A1E1W657   A0A1E1WPN8   A0A212FL28  
Pubmed
28756777    26354079    22118469   
EMBL
NWSH01002089    PCG69224.1    KZ150033    PZC74675.1    KQ459601    KPI93914.1    + More
KQ460870    KPJ11744.1    PCG69225.1    PCG69226.1    GDQN01008594    JAT82460.1    GDQN01006102    GDQN01002253    JAT84952.1    JAT88801.1    AGBW02007898    OWR54444.1   
Proteomes
UP000218220    UP000053268    UP000053240    UP000007151   
Pfam
PF00621   RhoGEF
Interpro
IPR000219   DH-domain        + More
IPR001849   PH_domain       
IPR035899   DBL_dom_sf       
IPR011993   PH-like_dom_sf       
SUPFAM
SSF48065   SSF48065       
Gene 3D
1.20.900.10     2.30.29.30    
CDD
cd00160  RhoGEF
ProteinModelPortal
A0A2A4JCE2   A0A2W1BLY8   A0A194PMF1   A0A194R2J6   A0A2A4JAW9   A0A2A4JBT5   + More
A0A1E1W657   A0A1E1WPN8   A0A212FL28  
PDB
2RGN     E-value=3.62062e-26,     Score=297

Ontologies

KEGG
101742987    no KO assigned | (RefSeq) FYVE, RhoGEF and PH domain-containing protein 3-like
GO
GO:0035023   GO:0005089   GO:0015074   GO:0008270   GO:0043565   GO:0043401   GO:0003677   GO:0003707   GO:0004651   GO:0005634  

Topology

Length:
773
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05663
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00016
outside
1  -  773
 
 

Population Genetic Test Statistics

Pi
27.749559
Theta
184.883346
Tajima's D
1.232371
CLR
0.32751
CSRT
0.722813859307035
Interpretation
Uncertain
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