Gene

KWMTBOMO01864

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):6867962-6870094      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.167

CDS

ATGGCTATACTATACATACACCTGCGACACGCAACGTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTTCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAAGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA

Protein

MAILYIHLRHATYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISFRIRRRNLTPPITLFRQPIPWAKKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRTRRTRQRGRRAT

Uniprot

Q93137   K9N5J5   Q9XXW0   Q9BPQ0   A0A0N0PA09   A0A194Q1H8   + More
O96544   A0A0N1PFV1   O96546   V5I850   V5GNF3   V5GNJ2   A0A1Y1NA23   A0A139WA11   A0A2S2PR14   A0A2S2Q823   X1WLB2   X1WXU3   X1WMU5   A0A139W8G9   J9KKL3   X1WWC4   A0A087T1W0   A0A023EZE6   X1WL89   A0A087U2S8   A0A1Y1M7E9   A0A224XF24   A0A2S2PH29   X1X928   A0A2J7QQP1   A0A2H8TES1   A0A087T2T6   J9KC83   A0A2S2NGV8   A0A2J7RRU8   A0A2S2PX53   A0A0A9Z4E6   J9KCZ4   A0A2J7QAT1   A0A2J7PVX3   A0A023F742   X1WNI2   A0A0J7MYU2   A0A2J7R8R8   A0A2A4K8E7   A0A023EYS8   A0A2J7PDM0   A0A0A9YN51   A0A2J7RL12   O76197   A0A2J7PVE7   A0A0J7K4E0   A0A2J7RIW7   A0A2J7RS81   A0A2S2QJM7   A0A2J7R7D0   A0A2J7QUJ9   A0A2J7RM10   A0A2J7R4B7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7Q059   A0A2J7PU96   A0A2S2N814   A0A2M4BDV6   A0A2S2QTZ8   A0A2S2NJB5   A0A2J7RB54   A0A2J7RPU2   A0A023F705   A0A2A4K918   A0A0J7MT32   A0A1Y1LKN6   A0A087TPE4   A0A0A9YJ00   A0A2J7PMP9   A0A2J7QB68   A0A2M4BD67   A0A3N5Z7I3   A0A2J7RS77   A0A2S2PHL7   A0A2J7Q627   A0A2S2RAN7   A0A2J7R2E1   A0A2J7QFL0   A0A2J7QR37   A0A2J7R6U1   A0A2J7Q0Q6   A0A2S2PPK8   A0A2J7RKP3   A0A2J7Q6J2   Q07995   J9LC15   A0A2J7QEZ4   A0A2J7R2B7   A0A2J7Q5G9   A0A2J7Q1Y9  

Pubmed

23652563    10333566    26354079    10380107    28004739    18362917    + More
19820115    25474469    25401762    8934517    30086797    8387152   

EMBL

U07847    AAA17752.1    KC165845    AFY12622.1    AB018558    BAA76304.1    + More
AB055391    BAB21761.1    KQ459259    KPJ02068.1    KQ459580    KPI99178.1    AF081101    AAC72919.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    GALX01005300    JAB63166.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GGMS01004685    MBY73888.1    ABLF02042518    ABLF02057746    ABLF02008933    ABLF02014862    ABLF02014866    ABLF02061908    KQ973342    KXZ75569.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK113014    KFM59099.1    GBBI01004571    JAC14141.1    ABLF02019349    ABLF02041900    KK117880    KFM71667.1    GEZM01038405    JAV81653.1    GFTR01008038    JAW08388.1    GGMR01016114    MBY28733.1    ABLF02066620    NEVH01012084    PNF30905.1    GFXV01000774    MBW12579.1    KK113137    KFM59425.1    ABLF02033757    GGMR01003407    MBY16026.1    NEVH01000598    PNF43535.1    GGMS01000737    MBY69940.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    ABLF02008463    NEVH01016327    PNF25684.1    NEVH01020940    PNF20481.1    GBBI01001693    JAC17019.1    ABLF02008153    ABLF02008462    ABLF02008464    LBMM01013518    KMQ85605.1    NEVH01006721    PNF37225.1    NWSH01000032    PCG80497.1    GBBI01004395    JAC14317.1    NEVH01026386    PNF14434.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    NEVH01002704    PNF41489.1    AF012049    AAC24972.1    NEVH01020963    PNF20308.1    LBMM01014395    KMQ85192.1    NEVH01003017    PNF40781.1    NEVH01000269    PNF43694.1    GGMS01008766    MBY77969.1    NEVH01006736    PNF36716.1    NEVH01010546    PNF32261.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01020071    PNF21969.1    NEVH01021205    PNF19912.1    GGMR01000676    MBY13295.1    GGFJ01001857    MBW50998.1    GGMS01012005    MBY81208.1    GGMR01004661    MBY17280.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GBBI01001692    JAC17020.1    PCG80496.1    LBMM01018951    KMQ83660.1    GEZM01053022    JAV74219.1    KK116158    KFM66983.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01023961    PNF17613.1    NEVH01016302    PNF25823.1    GGFJ01001858    MBW50999.1    RPOV01000134    RPJ78669.1    NEVH01000280    PNF43672.1    GGMR01016296    MBY28915.1    NEVH01017542    PNF24034.1    GGMS01017914    MBY87117.1    NEVH01007838    PNF34986.1    NEVH01014858    PNF27387.1    NEVH01011985    PNF31054.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    GGMR01018716    MBY31335.1    NEVH01002716    PNF41415.1    NEVH01017470    PNF24199.1    S59870    AAB26437.2    ABLF02020655    ABLF02039168    ABLF02061060    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01007841    PNF34974.1    NEVH01017559    PNF23833.1    NEVH01019376    PNF22596.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000036403    + More
UP000218220   

PRIDE

Q93137    K9N5J5    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   K9N5J5   Q9XXW0   Q9BPQ0   A0A0N0PA09   A0A194Q1H8   + More
O96544   A0A0N1PFV1   O96546   V5I850   V5GNF3   V5GNJ2   A0A1Y1NA23   A0A139WA11   A0A2S2PR14   A0A2S2Q823   X1WLB2   X1WXU3   X1WMU5   A0A139W8G9   J9KKL3   X1WWC4   A0A087T1W0   A0A023EZE6   X1WL89   A0A087U2S8   A0A1Y1M7E9   A0A224XF24   A0A2S2PH29   X1X928   A0A2J7QQP1   A0A2H8TES1   A0A087T2T6   J9KC83   A0A2S2NGV8   A0A2J7RRU8   A0A2S2PX53   A0A0A9Z4E6   J9KCZ4   A0A2J7QAT1   A0A2J7PVX3   A0A023F742   X1WNI2   A0A0J7MYU2   A0A2J7R8R8   A0A2A4K8E7   A0A023EYS8   A0A2J7PDM0   A0A0A9YN51   A0A2J7RL12   O76197   A0A2J7PVE7   A0A0J7K4E0   A0A2J7RIW7   A0A2J7RS81   A0A2S2QJM7   A0A2J7R7D0   A0A2J7QUJ9   A0A2J7RM10   A0A2J7R4B7   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7Q059   A0A2J7PU96   A0A2S2N814   A0A2M4BDV6   A0A2S2QTZ8   A0A2S2NJB5   A0A2J7RB54   A0A2J7RPU2   A0A023F705   A0A2A4K918   A0A0J7MT32   A0A1Y1LKN6   A0A087TPE4   A0A0A9YJ00   A0A2J7PMP9   A0A2J7QB68   A0A2M4BD67   A0A3N5Z7I3   A0A2J7RS77   A0A2S2PHL7   A0A2J7Q627   A0A2S2RAN7   A0A2J7R2E1   A0A2J7QFL0   A0A2J7QR37   A0A2J7R6U1   A0A2J7Q0Q6   A0A2S2PPK8   A0A2J7RKP3   A0A2J7Q6J2   Q07995   J9LC15   A0A2J7QEZ4   A0A2J7R2B7   A0A2J7Q5G9   A0A2J7Q1Y9  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.640789999999998

Exp number, first 60 AAs:

0.01952

Total prob of N-in:

0.03054

outside

1  -  450

 

 

Pi

47.355606

Theta

64.598943

Tajima's D

0.956584

CLR

0

CSRT

0.652767361631918

Interpretation

Uncertain