SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01862
Pre Gene Modal
BGIBMGA005961
Annotation
PREDICTED:_protein_muscleblind_isoform_X5_[Bombyx_mori]
Full name
Protein muscleblind      
Alternative Name
Protein mindmelt
Location in the cell
Nuclear   Reliability : 3.978
 

Sequence

CDS
ATGGCCACCATGGTGAACATGAACAGCTTGCTGAACGGCAAGGACTCCCGCTGGTTACAACTCGAAGTATGCAGGGAGTTCCAGCGGAATAAGTGCTCGCGACCAGATACTGAATGCAAATTTGCGCATCCCCCGGCTACCGTCGAGGTGCAGAATGGAAGAGTCACCGCCTGCTACGACAGTATCAAGGGACGGTGTAACCGCGAGAAGCCACCCTGCAAATACTTCCATCCGCCACAACACCTGAAGGATCAGCTGTTGATCAACGGCAGGAATCATCTAGCCCTGAAGAACGCACTAATGCAGCAAATGGGTCTGACACCCGGGCAAGTGTTGCCCGGTCAGGTGCCCGCCGTGGCGACGTCACCTTATTTGTCGGGGGTGCCGGGCGTGGGATCGACGTACGCACAGTACTATGCACCTCAGCTGGTGCCCGCAATGTTGGGTCACGATCCGGCAGCCGCCGCCGCCTCGCCACTCGGTGTCATGCAGCAACCCGTGCTGCAACAGAAATTGCCTCGTACCGATCGTCTCGAGACGGCAGCAGCAGTGCAGTCGCCGGCAACGAGCGCAACTTCAGAGCCGGGCAAGAAACGGGCGGCGCCAACCGAGTTCGAGCCGCCACCGATGGACATGAAGAGCGTCGGTTCCTTCTATTATGATAACTTTGCCTTCCCCGGCGTGGTGCCGTACAAGCGACCGGCTGCCGACAAAGCTGGTGTACCAGTGTATCAGCCGGCGACAACCTACCAGCAACTGATGCAGCTCCAGCAGCCGTTCGTGCCCGTGTCATTTACTGGACACCCTCCCGGTGTGCCAAGATTTTAA
Protein
MATMVNMNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPATVEVQNGRVTACYDSIKGRCNREKPPCKYFHPPQHLKDQLLINGRNHLALKNALMQQMGLTPGQVLPGQVPAVATSPYLSGVPGVGSTYAQYYAPQLVPAMLGHDPAAAAASPLGVMQQPVLQQKLPRTDRLETAAAVQSPATSATSEPGKKRAAPTEFEPPPMDMKSVGSFYYDNFAFPGVVPYKRPAADKAGVPVYQPATTYQQLMQLQQPFVPVSFTGHPPGVPRF

Summary

Description
Required for terminal differentiation of photoreceptor cells. Vital for embryonic development.
Similarity
Belongs to the muscleblind family.
Keywords
Alternative splicing   Complete proteome   Developmental protein   Metal-binding   Nucleus   Reference proteome   Repeat   Sensory transduction   Vision   Zinc   Zinc-finger  
Feature
chain  Protein muscleblind
splice variant  In isoform D.
EMBL
NWSH01000026    PCG80598.1    GDQN01006543    GDQN01003717    JAT84511.1    JAT87337.1    + More
KZ150176    PZC72571.1    GEZM01015475    GEZM01015470    GEZM01015468    GEZM01015467    JAV91623.1    GALX01004513    JAB63953.1    JR035023    AEY56177.1    GEZM01015477    GEZM01015476    GEZM01015473    GEZM01015469    JAV91621.1    GGFJ01007616    MBW56757.1    GBHO01040788    GBHO01040785    GBHO01040777    GBHO01019353    GBHO01007166    JAG02816.1    JAG02819.1    JAG02827.1    JAG24251.1    JAG36438.1    GECU01036862    GECU01021121    GECU01008647    JAS70844.1    JAS86585.1    JAS99059.1    GBYB01008237    JAG78004.1    GDQN01010585    GDQN01001066    JAT80469.1    JAT89988.1    GBYB01010896    JAG80663.1    GECZ01010618    GECZ01010529    GECZ01003874    JAS59151.1    JAS59240.1    JAS65895.1    GECU01017303    GECU01013191    GECU01001860    JAS90403.1    JAS94515.1    JAT05847.1    GEZM01015471    JAV91622.1    GALX01004511    JAB63955.1    GBHO01040789    GBHO01023869    GBHO01018831    GBHO01011672    GBHO01007168    GBHO01004168    GBRD01011723    GBRD01011722    GBRD01007061    GBRD01007060    GBRD01005047    GBRD01000386    GBRD01000384    JAG02815.1    JAG19735.1    JAG24773.1    JAG31932.1    JAG36436.1    JAG39436.1    JAG54101.1    GECU01016782    GECU01015032    GECU01008679    JAS90924.1    JAS92674.1    JAS99027.1    GALX01004512    JAB63954.1    GFDL01016031    JAV19014.1    GECZ01019680    GECZ01015182    GECZ01006198    JAS50089.1    JAS54587.1    JAS63571.1    GECU01018861    GECU01015513    GECU01000175    JAS88845.1    JAS92193.1    JAT07532.1    GBGD01002701    JAC86188.1    GEDC01013144    GEDC01000347    JAS24154.1    JAS36951.1    GBBI01002378    JAC16334.1    KQ971342    KYB27669.1    AF001422    AF001536    AF001625    AF001626    AE013599    GBHO01035699    GBHO01035692    GBHO01035691    GBHO01024603    GBHO01023865    GBHO01019406    JAG07905.1    JAG07912.1    JAG07913.1    JAG19001.1    JAG19739.1    JAG24198.1    GECU01025961    JAS81745.1    GBHO01035694    GBHO01007167    GDHC01018934    JAG07910.1    JAG36437.1    JAP99694.1    CH480816    EDW48270.1    EFA04000.2    GBYB01010899    JAG80666.1    GECU01033566    JAS74140.1    GECZ01028556    GECZ01015774    JAS41213.1    JAS53995.1    GECU01029682    GECU01010278    GECU01009923    JAS78024.1    JAS97428.1    JAS97783.1    GBYB01008239    JAG78006.1    GBYB01010898    JAG80665.1    GEDC01005356    JAS31942.1    GGFL01000946    MBW65124.1    GGFK01007367    MBW40688.1    GGFJ01008961    MBW58102.1    GBYB01010897    JAG80664.1    GBHO01028103    GBHO01018832    JAG15501.1    JAG24772.1    GBHO01040787    GBHO01023870    GBHO01023866    GBHO01007067    GBHO01004165    GBHO01004158    GBRD01007010    GBRD01005046    GBRD01000387    GBRD01000385    JAG02817.1    JAG19734.1    JAG19738.1    JAG36537.1    JAG39439.1    JAG39446.1    JAG58811.1    GGFJ01008934    MBW58075.1    UFQT01000391    SSX23881.1    GECU01000954    JAT06753.1    GECZ01024308    GECZ01010726    JAS45461.1    JAS59043.1    GGFJ01008831    MBW57972.1    GECU01036957    GECU01009538    GECU01004202    JAS70749.1    JAS98168.1    JAT03505.1    GECU01036898    GECU01018306    GECU01002512    JAS70808.1    JAS89400.1    JAT05195.1    SSX23880.1    GBHO01035696    GBHO01024592    GBHO01023863    GBHO01007173    GBHO01007172    GBHO01007171    JAG07908.1    JAG19012.1    JAG19741.1    JAG36431.1    JAG36432.1    JAG36433.1    GBYB01008236    JAG78003.1    CH940648    KRF79568.1    GECZ01030512    JAS39257.1    CM002911    KMY94500.1    GECU01036289    JAS71417.1    KRF79554.1    JN812966    AFO19987.1    AFH08146.1    GECU01027003    GECU01019426    GECU01017762    JAS80703.1    JAS88280.1    JAS89944.1    CH954179    KQS62368.1    CM000158    KRK00362.1    KMY94498.1    KRF79567.1    KMY94502.1    JN812969    AFO19990.1    GFXV01004066    MBW15871.1    AGB93580.1    GBHO01023864    GBHO01004159    GDHC01001195    JAG19740.1    JAG39445.1    JAQ17434.1    SSX23879.1    KRK00358.1    GBHO01040784    GBHO01040783    GBHO01035698    GBHO01024586    GBHO01023867    GBHO01007169    JAG02820.1    JAG02821.1    JAG07906.1    JAG19018.1    JAG19737.1    JAG36435.1    JTDY01001505    KOB73708.1    KQS62363.1    KRK00359.1    CH902619    KPU76770.1    AGBW02001662    OWR55692.1    KQS62364.1    SSX23878.1    ABLF02035697    ABLF02035702    ABLF02051011    KMY94495.1    GGMS01010922    MBY80125.1    GGMR01011230    MBY23849.1    KRK00368.1    KRF79558.1    KPU76769.1    CH933808    KRG05125.1    KPU76779.1    KQS62357.1    KQS62370.1   
Pfam
PF00642   zf-CCCH
Interpro
IPR000571   Znf_CCCH       
PDB
3D2N     E-value=4.21235e-30,     Score=326

Ontologies

Topology

Subcellular location
Nucleus  
Length:
275
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01372
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04746
outside
1  -  275
 
 

Population Genetic Test Statistics

Pi
213.737285
Theta
190.31339
Tajima's D
0.19101
CLR
163.470263
CSRT
0.420628968551572
Interpretation
Uncertain
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