Silkworm Genome Informatics Database

Gene

KWMTBOMO01861

Pre Gene Modal

BGIBMGA005964

Annotation

PREDICTED:_golgin_subfamily_A_member_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(-):6631872-6647971 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.983

CDS

ATGTTTGCGAGTTTAAAAAGTAAAATAAAAGAGGAAACAGGAAGTGACATCAGTAAATTGACCAGTAGTTGGAGAAGTGGTGGCTTTTTAGGAAGAATATCACTCAGAGATGATTCGTCAGCAACCAGCCCCTCGAGCTCTGGTGGTCTTGGAGACTCACCGGCTGATTCCATCTCTCCGCAAATGGAAACATACTTGTCGGAACGTACTGGGGGCCAGATAGACCAAGCAGCATTACAGCAACAGTATTCTGTACAGCTAGAAAATAAATTAAGAGAAAGGGATACTTATTGGGAACAAAAAATTGAAGAATTGAAGTTGTCTCTAGCAACAGTTCAAGGTGAAGAAGCAGCAGCAGCTCAAGCTGTAGCTCGTGCGGCCCAAGCCGAGGCTGTAAGGGCTGCAAACGAACGCGACTTAGCTGAAAAACATGTGAGCGAACTGCGGACACAACTAGCAGCTGCTGAAAGAGCCCAAGACAGGCTCGATGAGCTGATGGAAGAGTTGGAGCAGTCCCGTCGCGAGTGGGCCCGCGAACGAGCGGACCTACTCGCAGTGCGGGGCGAGAGCGAGGCACGCATGCGCGACCTCGCCGACCAACTGGCGCTGGTGCAAGCCGCGCTGCCGCCTGACCACAAGCATCACCACATGGACGACGACGATAAACGTGAAGTGACGCCGACCGCGTGCGCCGAGTACGACCGCGTGTGTCGCGAGCGTGCGGTACTAAAACGACAACTGCAGGAAACTAAAATGGCGCTCGCCGATGTCAAGACATCGTGGAGCGGACAAATAGCTTCTTTGGAGACTCAGGTGGCGCGATTGTCGCGACAAGCCGGCGAAGAAGGATCCGAGCGAAGAAGGGTTGAGATAGAGAAAAAAGAGTTGCAAGAGAAACTTTCCAGTGTCGCCGCTGATTTAGAAAAATGTAGGCAGAATTTAGCCAATAGCGAGGCGAAGGTGGTGCGTTTGAACGGCGAAGTGCATTCGTTGGCGATGGAAGTGAAATCTCTGCGGAATTCTGCGGCGCACGTGGGCGAGAAGACAATGGAGTTGGAAAATCGGATAGAAGAATTGAACGAGGAAAACCGGCAGATGCATGAGTCCCTTGAGAATGAGCGTATATTAGTGAAGATACTGCAAGAGAAGGTGGATAAATCTAACAGGCTGTACGACGAGCAGAAAGCAGAAGTCAACCACCTGAACTCCGTTGTGAACGAGATGCAACACGATTACGTAGATATGCAGAGAAAGTTCGAGAAAGAAAAACGCGAGAAAGACGAAGCCTTGCTACGGAATGCTCACATGTCGCAGACAATAGAGATGGGCCAGTGCAACGTCAGGTACCAGGAGACCGAGATCGCTGACCTCAAAGCAAAGATAACAGAGTTGGAGGGACTTATATCTCAGCATCGAGAGAACCAAGCAGAATGCATGTTAATAAAACAAAGTGAAGAAACGCGTAAGAAAGAAATTGAAGCGTTAAACAAAAGGATACACGAACTAACAGAGAGCGAGGCTACACTAAAAAGTACTATACAAGAATTAGAAACTGAAATCTGTGATAAAAATAAGAAAATAAAGACTTTAGACAATCGAATATCTGACATGAAGAAGACACTCCAAAGAGAACTACAAAGTAGCAAATCCGATCTGACTTCGGCCGAAGAACAAGATATTAGCAGAAGGTACTTGAAGCACGTGGTGCTAAGGTTTCTAACCGGAAGGGAACTCGAAGCGAGACAGTTAACTCGTGCTCTGTCAGTCTTGCTCAGGCTGTCGTCACACGAGGAGGCCCTCCTGCGCTCTGCCTTTCCTCCCCGAACGGGCCTCTCCGCCTGGTTCCCATCGCTCACCAACACTTGA

Protein

MFASLKSKIKEETGSDISKLTSSWRSGGFLGRISLRDDSSATSPSSSGGLGDSPADSISPQMETYLSERTGGQIDQAALQQQYSVQLENKLRERDTYWEQKIEELKLSLATVQGEEAAAAQAVARAAQAEAVRAANERDLAEKHVSELRTQLAAAERAQDRLDELMEELEQSRREWARERADLLAVRGESEARMRDLADQLALVQAALPPDHKHHHMDDDDKREVTPTACAEYDRVCRERAVLKRQLQETKMALADVKTSWSGQIASLETQVARLSRQAGEEGSERRRVEIEKKELQEKLSSVAADLEKCRQNLANSEAKVVRLNGEVHSLAMEVKSLRNSAAHVGEKTMELENRIEELNEENRQMHESLENERILVKILQEKVDKSNRLYDEQKAEVNHLNSVVNEMQHDYVDMQRKFEKEKREKDEALLRNAHMSQTIEMGQCNVRYQETEIADLKAKITELEGLISQHRENQAECMLIKQSEETRKKEIEALNKRIHELTESEATLKSTIQELETEICDKNKKIKTLDNRISDMKKTLQRELQSSKSDLTSAEEQDISRRYLKHVVLRFLTGRELEARQLTRALSVLLRLSSHEEALLRSAFPPRTGLSAWFPSLTNT

Uniprot

A0A2H1W192 A0A194PKF3 A0A194R7W5 A0A0L7LVB6 E2B5F6 E2AES8 + More
D6WL29 A0A232EZM7 K7IPY0 E0VJN9 A0A1L8DV54 A0A0A1XG80 A0A0A1X252 A0A182IZS2 A0A034VMN6 A0A0K8VGC3 W8BQ84 A0A1B0CN72 A0A182FBN9

Pubmed

26354079 26227816 20798317 18362917 19820115 28648823 + More
20075255 20566863 25830018 25348373 24495485

EMBL

ODYU01005721 SOQ46851.1 KQ459601 KPI93921.1 KQ460855 KPJ11961.1 + More
JTDY01000055 KOB79136.1 GL445816 EFN89106.1 GL438939 EFN68055.1 KQ971343 EFA04056.1 NNAY01001509 OXU23753.1 DS235226 EEB13595.1 GFDF01003766 JAV10318.1 GBXI01003903 JAD10389.1 GBXI01009502 JAD04790.1 GAKP01016154 JAC42798.1 GDHF01014340 JAI37974.1 GAMC01014866 JAB91689.1 AJWK01019870 AJWK01019871 AJWK01019872 AJWK01019873

Proteomes

UP000053268 UP000053240 UP000037510 UP000008237 UP000000311 UP000007266 + More
UP000215335 UP000002358 UP000009046 UP000075880 UP000092461 UP000069272

Pfam

PF01465 GRIP

Interpro

IPR000237 GRIP_dom

ProteinModelPortal

A0A2H1W192 A0A194PKF3 A0A194R7W5 A0A0L7LVB6 E2B5F6 E2AES8 + More
D6WL29 A0A232EZM7 K7IPY0 E0VJN9 A0A1L8DV54 A0A0A1XG80 A0A0A1X252 A0A182IZS2 A0A034VMN6 A0A0K8VGC3 W8BQ84 A0A1B0CN72 A0A182FBN9

KEGG

101747130 K16731 golgin subfamily A member 1 | (RefSeq) golgin subfamily A member 1

GO

GO:0005794 GO:0000042 GO:0005515 GO:0015074 GO:0008270 GO:0043565 GO:0043401 GO:0003677 GO:0003707 GO:0004651 GO:0005634

Length:

621

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00057

outside

1 - 621

Pi

284.188504

Theta

187.870911

Tajima's D

0.850943

CLR

1.032682

CSRT

0.612119394030298

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics