SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01860
Pre Gene Modal
BGIBMGA006189
Annotation
PREDICTED:_long-chain_fatty_acid_transport_protein_4-like_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.351 Nuclear   Reliability : 1.795
 

Sequence

CDS
ATGGACGCGTTGCTGGCAGCGCTCGTGGCTCTGATGGCAGTTGCCGCCGCGATGGCCGCCGTGCTGAGTACGCTTTCTAAAGCTGCAATATTCGCTATCCTCGCGATAGCGCCCTGTGTGTATCGTTACAGAAAGCAGCTCTACATTATTTTCGTCACTCTTCCACGAGACCTCAAATTCCTATGGCGCTACGCGAATGGCATGGTAAGGTCGAAGCGATGGGGACGTCAAGATGCAACTGTAGCGGAATTGTTCACGCGACGTGCTAAACGGAATCCCGATGCGCCATGTTTTATTGTTGTTGGAGATCGAACGTGGACCTTTGGACAGATTGCGTCGAAATCGAACCAAGTGGCGCGAACTATGCAAGAGCACCTGCAGCTCAAACGCGGTGACGTGGTCTGCGTATTCCTGCCCAACAGCGGCGAGTACATCTGGACGTGGCTTGGCATCGCTAAAGTCGGAGGCGTTTCAGCACTGATCAACAGCAATCTGCGACATAAACCCCTCTTGCACTGCATACAAGTGGCCAATGCAAAGGCTGTAATCTTCTCTGATCAACTTACGGATGCGATTGACGAAATCCGTGATCAACTACCGAAGGGACTAAAAATGTTTCAACTGTATGGAAAGTCTAAACCTGGTATTCTGGATCTTGAGAATGAAATGAGCAAGCATTCAACAGACTACCCAGTCGTCACGGAGAAGCTTCATTATAAAGACACATTGCTTTACATCTACACGTCAGGCACGACGGGAATGCCGAAGGCTGCTGTTATGCCAAACTCCAAGTATTTGTTGATTGTAGCAGCGACGGTCCACATGCTGGGTTTGAATTCATCAGACCGCGTTTACAACTCGCTACCACTGTACCACACTGCGGGCGGTGTGGTGGGAACAGGGGCGGCGCTGGTCGACGGAATCCCCTCTGTGATCAGGCCCAAGTTCTCGGCGAGCAATTTTTGGACTGACTGTATTAAATATGATTGCACGGTGGCCCAGTACATTGGCGAGATGTGTAGATACTTGCTGTCTCAACCGGCGCGACCGACTGATTCGCAGCATCGCGTTCGCATCATGGTCGGCAATGGCATGCGACCCGCTATCTGGCAACAAATAGTGGACCGGTTCAAAATACCGCAGATCAACGAGATCTACGGCGCGACCGAGAGCAATGCAAACATCATCAACGTAGACAATACCTTGGGTGCTGTAGGCTTCCTTCCCAAGCTGGTACCAACCAGCCTTCACCCTATAGCGTTGGTGCGCTCGGACGATCAGGGAAACCTGGTGCGAGGACCTGACGGCTACTGCATCCGATGCCCCCCAAATGAGCCTGGTATGTTCATTGGACTTATCGCCCAGGGGAATGCGTCCCGAGAATATTACGGATACGTCGATAAGAACGACAGCAACAAGAAGTTGGTACGTGACGTTTTCTGTAAGGGAGACGCAGCCTTTGTGAGTGGCGACATCTTAGTGGCAGATGAGTTAGGTTATCTGTTCTTCCGTGATCGCACCGGGGACACGTACAAGTGGAAGGGCGAGAACGTCGCTACCGCCGAGGTCGAGAACGCCATGTCACCAGTGTTGGATGAGAAGGCCTGCGTTGTCTATGGTGTTTCGATCCCTCAGACGGAAGGACGAGTCGGCATGGCTGCCATAGCCGATCCGTTAGGCGAATTGGACTTGAAGAAGCTTGCGCGGGATTTAGATGATTGCTTGCCTTCGTATGCGAGACCAATGTTCCTGCGTTTCATGAATGATTTGGACATAACAAGTACATTCAAACTAAAAAAGTTGCAATACCAAAAGGAAGGTTTTGATCCTGACGTCATCAAGGAGCCGTTATACTTCAGATCCGGAGACAGTTTTGTACCCATAACCTCTCAACTATTCCATGATATTTGTAACGGAAAATTGAAAATTTAA
Protein
MDALLAALVALMAVAAAMAAVLSTLSKAAIFAILAIAPCVYRYRKQLYIIFVTLPRDLKFLWRYANGMVRSKRWGRQDATVAELFTRRAKRNPDAPCFIVVGDRTWTFGQIASKSNQVARTMQEHLQLKRGDVVCVFLPNSGEYIWTWLGIAKVGGVSALINSNLRHKPLLHCIQVANAKAVIFSDQLTDAIDEIRDQLPKGLKMFQLYGKSKPGILDLENEMSKHSTDYPVVTEKLHYKDTLLYIYTSGTTGMPKAAVMPNSKYLLIVAATVHMLGLNSSDRVYNSLPLYHTAGGVVGTGAALVDGIPSVIRPKFSASNFWTDCIKYDCTVAQYIGEMCRYLLSQPARPTDSQHRVRIMVGNGMRPAIWQQIVDRFKIPQINEIYGATESNANIINVDNTLGAVGFLPKLVPTSLHPIALVRSDDQGNLVRGPDGYCIRCPPNEPGMFIGLIAQGNASREYYGYVDKNDSNKKLVRDVFCKGDAAFVSGDILVADELGYLFFRDRTGDTYKWKGENVATAEVENAMSPVLDEKACVVYGVSIPQTEGRVGMAAIADPLGELDLKKLARDLDDCLPSYARPMFLRFMNDLDITSTFKLKKLQYQKEGFDPDVIKEPLYFRSGDSFVPITSQLFHDICNGKLKI

Summary

EMBL
NWSH01000026    PCG80595.1    BABH01004928    BABH01004929    KU755522    ARD71232.1    + More
KT261737    ALJ30277.1    KF960753    AII21955.1    KQ459601    KPI93922.1    KQ460855    KPJ11960.1    GEYN01000118    JAV02011.1    AGBW02012128    OWR45590.1    ODYU01006649    SOQ48680.1    NNAY01000564    OXU27645.1    GBYB01006136    GBYB01015095    JAG75903.1    JAG84862.1    KQ434943    KZC12231.1    GBBI01003260    JAC15452.1    KQ435759    KOX75694.1    KQ414714    KOC62939.1    GBHO01007187    GBHO01002895    JAG36417.1    JAG40709.1    GDHC01014013    GDHC01011181    JAQ04616.1    JAQ07448.1    GBRD01001918    JAG63903.1    GANO01002398    JAB57473.1    GECL01003465    JAP02659.1    JXUM01001108    JXUM01001109    KQ560116    KXJ84416.1    GBGD01000764    JAC88125.1    GAPW01000350    JAC13248.1    GFDL01005560    JAV29485.1    GFDL01002084    JAV32961.1    KQ971343    EFA03519.2    CH477196    EAT48382.1    GDKW01002815    JAI53780.1    GBBI01002688    JAC16024.1    JXUM01037594    KQ561134    KXJ79609.1    KK854443    PTY15897.1    GECZ01003946    JAS65823.1    AXCM01004450    AXCN02000314    AAAB01008987    EAA01228.5    ADMH02002183    ETN57977.1    DS231954    EDS28847.1    KQ978456    KYM93879.1    ACPB03008862    GDIQ01265532    GDIQ01164679    GDIQ01127246    GDIQ01088141    GDIQ01086151    GDIQ01084605    GDIQ01045818    JAN08586.1    GBYB01004241    GBYB01004242    JAG74008.1    JAG74009.1    GDIP01170573    JAJ52829.1    LRGB01000512    KZS18456.1    GDIQ01202846    JAK48879.1    GDIQ01245044    GDIQ01245043    GDIQ01166265    GDIQ01166263    GDIQ01133981    JAK06682.1    GDIQ01208794    JAK42931.1    GDIQ01190057    JAK61668.1    GDIQ01227702    GDIQ01204648    GDIQ01088142    GDIQ01070047    GDIQ01053515    JAN24690.1    GDIQ01245045    GDIQ01166264    GDIQ01133980    GDIQ01102539    JAK85461.1    GDIQ01201855    GDIQ01189202    GDIQ01189201    JAK62523.1    GDIQ01254338    GDIQ01210254    JAJ97386.1    GAKP01020345    GAKP01020341    JAC38611.1    GDIP01154132    JAJ69270.1    GDIQ01252141    GDIQ01206150    GDIQ01104120    GDIQ01104119    JAL47607.1    NEVH01016978    PNF24770.1    KK107063    EZA61088.1    GBXI01008652    JAD05640.1    QOIP01000005    RLU22958.1    OXU27644.1    GDIP01234973    JAI88428.1    GGFM01004615    MBW25366.1    GDIP01222777    JAJ00625.1    GDIP01214125    JAJ09277.1    GAKP01015886    JAC43066.1    NEVH01013990    PNF27940.1    GDIP01154131    JAJ69271.1    GDIP01233077    JAI90324.1    GBXI01004687    JAD09605.1    GDIQ01160604    JAK91121.1    AJWK01021905    AJWK01021906    AJWK01021907    AJWK01021908    AJWK01021909    AJWK01021910    AJWK01021911    GAMC01014421    GAMC01014420    JAB92135.1    GDIQ01246191    JAK05534.1    GL451657    EFN78828.1    GDIQ01156873    JAK94852.1    GDIP01214126    JAJ09276.1    GEDC01019541    JAS17757.1    CH902620    EDV32368.1    PNF27941.1    GDIP01233078    JAI90323.1    GDIP01222776    JAJ00626.1    JR039957    AEY58921.1    GECZ01030051    JAS39718.1    GL766616    EFZ14911.1   
Pfam
PF00501   AMP-binding        + More
PF13193   AMP-binding_C
Interpro
IPR020845   AMP-binding_CS        + More
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       
IPR025110   AMP-bd_C       
IPR030304   FATP4       
Gene 3D
PDB
3R44     E-value=4.53407e-18,     Score=226

Ontologies

Topology

Length:
643
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
32.1506500000002
Exp number, first 60 AAs:
27.85559
Total prob of N-in:
0.66396
POSSIBLE N-term signal
sequence
inside
1  -  2
TMhelix
3  -  25
outside
26  -  643
 
 

Population Genetic Test Statistics

Pi
213.276965
Theta
187.54782
Tajima's D
0.708126
CLR
1.936352
CSRT
0.575671216439178
Interpretation
Uncertain
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