Silkworm Genome Informatics Database

Gene

KWMTBOMO01849

Annotation

PREDICTED:_meiotic_recombination_protein_SPO11_[Bombyx_mori]

Location

Bomo_Chr4(-):6318730-6320612 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.856

CDS

ATGTCAGTTATAGGATTCCTTCGCAGGATGGAGCTAATTCATAAACAAGTACCGATGTTAAGAGACTTGGCATTGAATCCGGTCTTCTCTTTTAAACAAGATTTGAAGTTGATAGCGGTGATTGATAAATTAGCGGTCGATGGGAGATGCGATATGACTGAAAATAAAAATGTTCTAACGTTACCTGAACGTAAATTAGGATTCTCTGAAGTGCAGCGAATGCTGAAAGGATGCTGCGAGGATAAAGCATTTCAGAAACTCGACATTAAGTTAGACGAAAAACATTCCATACGAAAATCTTTAATTAAAAAGGTGGAAGAAATTCTAAACGGCATCAACGAGGACGCTGAAAATGGGAATGTACCAAAACTAGTTATCAGGAATCAAAGACTTTGGAGTAATTGTGTTTATGATTTAGACCGAGTGACATTAAAATGTTTCAATGAAGCAAAGACATCAACAATAACTTACTCTAGCTCAGAAGACAAAACTAGATTTAACACGATCGTGTTTGTATTGACTAAAGTACACGAATTGTTAATTAAAAACCTAACAGTAACTAGAAGGGAATTATTCTATCAAAATGTGATAAGACTGCGCAATCAAGCGAACCTTGACGTCGCAGTCAGAGATGTCTGTTGTTTGTTGGACACTCCGCCATGGAATCTTGGTATTGTAGCAACTGCTAAAGGCTTGATAGCTGGACCTCTTACTATTAAACATAGGGACGGATCTGTGACAGACTGCATGGCTTCAAGCGGTGAGTATGCTTTAATAGTTTGGCCTCAAAGCTTTAGGTTAGAATTTTCAGAACGATTTAACAGTTAG

Protein

MSVIGFLRRMELIHKQVPMLRDLALNPVFSFKQDLKLIAVIDKLAVDGRCDMTENKNVLTLPERKLGFSEVQRMLKGCCEDKAFQKLDIKLDEKHSIRKSLIKKVEEILNGINEDAENGNVPKLVIRNQRLWSNCVYDLDRVTLKCFNEAKTSTITYSSSEDKTRFNTIVFVLTKVHELLIKNLTVTRRELFYQNVIRLRNQANLDVAVRDVCCLLDTPPWNLGIVATAKGLIAGPLTIKHRDGSVTDCMASSGEYALIVWPQSFRLEFSERFNS

Uniprot

H9J8X6 A0A2A4JC90 A0A0L7L458 A0A2H1WX28 A0A194R353 A0A194PKG6 + More
A0A212F620 A0A146ZZS1 A0A3B3VEJ8 M4ATQ4 A0A397VXG3 A0A0M8ZXK3 B0W7T3 A0A154PMB7 A0A195C891 A0A310SIE9

Pubmed

19121390 26227816 26354079 22118469 23542700

EMBL

BABH01004898 NWSH01001958 PCG69571.1 JTDY01003123 KOB70111.1 ODYU01011700 + More
SOQ57608.1 KQ460855 KPJ11949.1 KQ459601 KPI93931.1 AGBW02010086 OWR49173.1 GCES01014846 JAR71477.1 QKWP01000206 RIB24673.1 KQ435803 KOX73170.1 DS231855 EDS38227.1 KQ434978 KZC12973.1 KQ978220 KYM96353.1 KQ760945 OAD58604.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053240 UP000053268 UP000007151 + More
UP000261500 UP000002852 UP000266673 UP000053105 UP000002320 UP000076502 UP000078542

PRIDE

H9J8X6

Pfam

PF04406 TP6A_N

Interpro

IPR034136   TOPRIM_Topo6A/Spo11        + More
IPR036078   Spo11/TopoVI_A_sf
IPR013049   Spo11/TopoVI_A_N
IPR002815   Spo11/TopoVI_A
IPR013048   Meiotic_Spo11
IPR036388   WH-like_DNA-bd_sf

SUPFAM

SSF56726 SSF56726

Gene 3D

1.10.10.10

CDD

cd00223 TOPRIM_TopoIIB_SPO

ProteinModelPortal

H9J8X6 A0A2A4JC90 A0A0L7L458 A0A2H1WX28 A0A194R353 A0A194PKG6 + More
A0A212F620 A0A146ZZS1 A0A3B3VEJ8 M4ATQ4 A0A397VXG3 A0A0M8ZXK3 B0W7T3 A0A154PMB7 A0A195C891 A0A310SIE9

KEGG

101742267 K10878 meiotic recombination protein SPO11 | (RefSeq) meiotic recombination protein SPO11

GO

GO:0005694 GO:0003677 GO:0003824 GO:0005524 GO:0000737 GO:0016853 GO:0006259 GO:0006355 GO:0006397 GO:0004651 GO:0005634 GO:0016889

PANTHER

PTHR10848

Length:

275

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01233

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02220

outside

1 - 275

Pi

145.437323

Theta

206.968523

Tajima's D

-0.906253

CLR

16.72902

CSRT

0.15799210039498

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics