SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01842  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006178
Annotation
acinus_[Bombyx_mori]
Location
Bomo_Chr4(+):6043906-6048766      View in EpiBrowser
Location in the cell
Cytoplasmic   Reliability : 2.788 Nuclear   Reliability : 4.443
 

Sequence

CDS
ATGCGTCGGAAAAGTGAGCGTACCGCCAGTAAGAAGGCAAAGGCCTCTCCTGAAGTAAAAGTTGAAAAAGCAAAGAAAACAAGAACGCGACGTAGAAAACAATCTTCTTCATCAGAAAATGATTCTCCAGATGAAGCAAGTCCAGTGCGTGTAGCTGTACCCGTGGCGGAAGAGGAACGTAAACCACCACAAACTCCCGCCAAAGGGGAAAATGTGGACGAGTCTCCGGATCAAGTTTGGCAGGTTAAAACTGCTGAGGGATCAGGTGATGGTGGAGAAATACAAAAACTCAAAATTTGCTTAACACGTCCGCCATCTACACCAGAACGTGCTGAAAGATCGCCGCGTCAAAAAAGGAAACACTCGCGAGCTACTAGTTCTAGTGATAACCCTAGTGATACATCGGAAGAAAAGAAAAAAAATAAACACCGTTCTAAAAGATCTTTTCGAGATAAAGATGGCACTGACAAAAATCAAGACAGCCAAGAAGAAGACCAAGACGCTGAAAATGAAGATAAAGAGAAAAGTGATCATGAAGTATCTCAAAGTGAAACAGAGGCCAAAGTAGAGACTTCTGTGTCTACAACAAATAAAGAAAATAAATCAATTGAAGAATCATCCGAAGATGCTTCAAGCAGTATAAAATCTAGTAATGTCGTAGAAATTTGTGCTTCTGTACAGGACGATCCTGTTGCTGATACAACTGTTGGATCACCCAGACCTGAAACAAATGCTTCACTCAAACTTGACTCAGTATCAGCTGCGGCCGCTGAAACAACTGAAGTAAACAATGAAAATACTGATGAATCCATAAATGATGAAAAAACAGAGATAACAAATGAAGACAAAACTGTTGAAACAACAAATGCTGAGTCTGTTACTGAAAATAATGAATCAACATTAGATACCTTAAAGGATGAAACTGTTTTAATTGAAAAGGAGGAAACAACTGTTGTAACTACCAAAGACACATCTCAAACAGAGATAAATGAAACTGAATCCAATGACAATAAGTCAACCAGCAGGGAAAGAAGTGATTCTGTTGATAAATCAGAGGTATTAGAATTACATCCAGAAGAATCAAAAATGGAAATACAAGATGTGGAGATAAGTAAATCAAAGGATATTGAAACCAGTGAGGAATTAGAAGTAACTGTGGATCATAATGCTGAGAGAAATCCAGAAAAACTTCAACAGATTCTGGACAAAGCAATGAAGAAAAGAAAATGGGGATCTAGACCAAGTAAACTAACAACACAGAAGTCAATCACTATATCAACTGATGTGTTGAAGGATATCATACCAAATGTTAAACCTGTTGAATTTGATGAAGTTATTGAAGAGAAGAAACATAAAAGAATAGAAGTTAAAGAGAAAATTGATCGGCCTGTCTTGCCCAAAATTGTTATAGATAATTCAGAAAATGTTGAACAAAAGAAAAAAGATGAAAGAAAAGAGAATGACAAAGACAAAGAAAACGTTAAACTAAAGGAAATTAACTCCAATAGAAAAATATCGATTATCAAAGAAAAAGACAGTATAATTGCAAGACCGCCCAGTCCACCAAGGCACAAACAGTCAAATATACTCTTTATCACCAATTTAGTCAGGCCATTTACACTATTGCAACTCAAAAACTTACTGCAAAGAACTGGCAGGATAGAGGAAAATGGGTTTTGGATAGATAAAATAAAATCTAAATGCTATGTGAAATATGAAACTGAAGATCAAGCTGTTGAAACAAGACATGCCTTGCATGGGGTGACATGGCCTGTATCAAATCCAAAGACTTTACATGTGGACTTTTCAACAACAGAAGCATTTGACAAAGCATTATCCAGTGAGGAAGCAGAGAGTGCTCCACCTTCGGCAATTCCAGGAACAGTTGAGGATTGGCTTCGGGAGCAAGATCTGAAAAGAGAGGCAGAAGTGGAAAAGTCATGGGAGCGTAAAGGAACTATGAGGGAGTGGGATGTAGGCAAAAATGATAAAGACAAAGAGAGAGACAAGTTGCGACGTGAAGAGCGTCCATCTGAGAAAAGACGACATCGGACCCCAGAAAGGAGCCCCGAACCAGCGAGAAAATTCAAAAAGAAAGAAGAAGAGGCTCCTGCAAAATTACTTGATGATTTATTTAGAAAAACAAAAACAACTCCATGTATTTACTGGTTGCCACTGTCTGCTGAAACGATTGCAATAAAGGAAGAGCAACGTCGCCAGCACATGGCCGAGTATGAACGTCGCTTACTAGAGCAACGTCGGCCGCCGCCCCACCGACGTCATTAG
Protein
MRRKSERTASKKAKASPEVKVEKAKKTRTRRRKQSSSSENDSPDEASPVRVAVPVAEEERKPPQTPAKGENVDESPDQVWQVKTAEGSGDGGEIQKLKICLTRPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKDGTDKNQDSQEEDQDAENEDKEKSDHEVSQSETEAKVETSVSTTNKENKSIEESSEDASSSIKSSNVVEICASVQDDPVADTTVGSPRPETNASLKLDSVSAAAAETTEVNNENTDESINDEKTEITNEDKTVETTNAESVTENNESTLDTLKDETVLIEKEETTVVTTKDTSQTEINETESNDNKSTSRERSDSVDKSEVLELHPEESKMEIQDVEISKSKDIETSEELEVTVDHNAERNPEKLQQILDKAMKKRKWGSRPSKLTTQKSITISTDVLKDIIPNVKPVEFDEVIEEKKHKRIEVKEKIDRPVLPKIVIDNSENVEQKKKDERKENDKDKENVKLKEINSNRKISIIKEKDSIIARPPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEENGFWIDKIKSKCYVKYETEDQAVETRHALHGVTWPVSNPKTLHVDFSTTEAFDKALSSEEAESAPPSAIPGTVEDWLREQDLKREAEVEKSWERKGTMREWDVGKNDKDKERDKLRREERPSEKRRHRTPERSPEPARKFKKKEEEAPAKLLDDLFRKTKTTPCIYWLPLSAETIAIKEEQRRQHMAEYERRLLEQRRPPPHRRH

Summary

Uniprot
A0A1E1WU44  
EMBL
GDQN01000485    JAT90569.1   
Pfam
PF16294   RSB_motif
Interpro
IPR035979   RBD_domain_sf        + More
IPR032552   RSB_motif       
IPR034257   Acinus_RRM       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
SUPFAM
SSF54928   SSF54928       
Gene 3D
3.30.70.330    
CDD
cd12432  RRM_ACINU
ProteinModelPortal
A0A1E1WU44  
PDB
6G6S     E-value=4.84428e-23,     Score=270

Ontologies

KEGG
100270778    K12875 apoptotic chromatin condensation inducer in the nucleus | (RefSeq) Acci, acinus; apoptotic ch
PATHWAY
03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)
GO
GO:0003723   GO:0000166   GO:0003676   GO:0004672   GO:0005524   GO:0006357   GO:0032784   GO:0006355   GO:0006397   GO:0004651   GO:0005634  

Topology

Length:
761
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00108
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00102
outside
1  -  761
 
 

Population Genetic Test Statistics

Pi
220.211965
Theta
202.802273
Tajima's D
0.14182
CLR
1.746411
CSRT
0.412829358532073
Interpretation
Uncertain
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