SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01841  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005969
Annotation
PREDICTED:_cyclin-Y-like_protein_1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.742
 

Sequence

CDS
ATGGGTAATCAAAATAGTTGCTGCTGCTATCGGAGTCCATCTCCCATTCGCAAAGATATAGTAAAGTTGGAAGACTATCTTCCAGAAGGAGAAGTAAGCTCAAATAACATACAACACATCAGCGAGAGGGAGCCTGATGATGGCGACATCGATCCATCGCAAGATCCGATGGCTGGCACCATTTTCATGGAACGTTCTAAAGCTTCAATAGAGAATGGTATGACTAGGAAGCGGAGCCAACATCAAATAGCTGACAATAAATTAAAGAAAAGCAGTTCCTGTTCTACAATTTACTTAGATGATAGTACTGTGTCTCAACCAAATTTGAAAAACACTGTGAGGTGTGTAGCACTTGCTATTTACTATCACATAAAGAATAGAATGTCTGAGCGCAGGTTAGATATTTTTGATGAGAAACTTCATCCTTTGAGCAAAGAAGGTGTGAGTGATGACTATGATAAATACAATCCAGAGCATAAGCAGATTTATAAATTTGTAAGAACATTATTTAATGCAGCACAATTAACTGCAGAATGTGCTATTATTACTCTAGTCTATTTAGAGAGACTTCTAATTTGTGCTGAACTTGATATTGCACCTTCAAATTGGAAAAGAATTGTATTAGGGGCAATCTTATTAGCGAGTAAGGTATGGGACGATCAAGCAGTTTGGAATGTTGACTACTGTCAAATTCTAAAAGATATAACTGTTGAAGATATGAATGAGCTTGAACGACAATTTCTAGAAATGTTACAATTCAATATCAATGTTCCATCGAGTGTCTATGCTAAATACTATTTTGATCTACGTACACTTGCTGAAGCTAATGACCTAGCATTTCCTAGTGAGCCTCTTAGCAAGGAAAGGGCACAAAAGTTAGAAGCGATGTCACGAGTTATGGAAGACAAAATAACTGCTGAAATTGTAAAAAATGGTATTAAGAAATGGTCAAGTTTAGACAATGTTAATGCTGGTGCTGGAGTAAGACGAAGTGTAGCCATTTTGTCTTAA
Protein
MGNQNSCCCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTIYLDDSTVSQPNLKNTVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSKEGVSDDYDKYNPEHKQIYKFVRTLFNAAQLTAECAIITLVYLERLLICAELDIAPSNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRTLAEANDLAFPSEPLSKERAQKLEAMSRVMEDKITAEIVKNGIKKWSSLDNVNAGAGVRRSVAILS

Summary

Similarity
Belongs to the cyclin family.
EMBL
BABH01004875    NWSH01001848    PCG69925.1    ODYU01004889    SOQ45224.1    GAIX01004011    + More
JAA88549.1    KQ460855    KPJ11943.1    KQ459601    KPI93937.1    AGBW02010086    OWR49180.1    JTDY01004526    KOB68047.1    RSAL01000014    RVE53283.1    KQ971341    EFA03779.1    GEZM01053157    GEZM01053156    JAV74155.1    APGK01040724    KB740984    KB631904    ENN76246.1    ERL87075.1    JXUM01004990    JXUM01013405    GAPW01002402    KQ560376    KQ560185    JAC11196.1    KXJ82719.1    KXJ83942.1    CH477670    EAT37476.1    KQ977754    KYN00116.1    AAAB01008984    EAA14817.3    KQ979568    KYN20878.1    GL888818    EGI57891.1    KQ981864    KYN34258.1    ADTU01014825    GL435242    EFN73682.1    GL768221    EFZ11698.1    GL451202    EFN79755.1    GFDL01003958    JAV31087.1    GGFK01006375    MBW39696.1    PYGN01000369    PSN47554.1    GGFJ01006762    MBW55903.1    ADMH02000571    ETN65852.1    AXCM01019394    GGFM01002044    MBW22795.1    KQ434823    KZC07260.1    KZ288349    PBC27377.1    ATLV01025637    KE525396    KFB52497.1    NNAY01000723    OXU26789.1    AXCN02000736    GANO01000184    JAB59687.1    KQ976662    KYM78544.1    APCN01003406    LBMM01005312    KMQ91620.1    NEVH01019965    PNF22125.1    KK852415    KDR24361.1    UFQS01001999    UFQT01001999    SSX12913.1    SSX32355.1    KK107178    QOIP01000006    EZA56048.1    RLU21229.1    GDAI01002665    JAI14938.1    GBGD01002037    JAC86852.1    GDKW01000559    JAI56036.1    GECL01002674    JAP03450.1    ACPB03011334    ACPB03011335    GAHY01000530    JAA76980.1    KK855123    PTY21000.1    CVRI01000054    CRL00640.1    GFDF01010485    JAV03599.1    LJIG01022904    KRT78137.1    KQ414612    KOC69182.1    GEBQ01027535    JAT12442.1    GEDC01023162    JAS14136.1    GGMR01015255    MBY27874.1    ABLF02025311    AJVK01002452    AJVK01002453    AJVK01002454    GFXV01000574    MBW12379.1    GBXI01011824    GBXI01008739    GBXI01000420    JAD02468.1    JAD05553.1    JAD13872.1    GAMC01002191    GAMC01002190    JAC04365.1    GBHO01010099    GBHO01010098    GBHO01007419    GBHO01001207    GBHO01001205    GBHO01001202    GBHO01001200    GBHO01001198    GBRD01016720    GDHC01021735    JAG33505.1    JAG33506.1    JAG36185.1    JAG42397.1    JAG42399.1    JAG42402.1    JAG42404.1    JAG42406.1    JAG49107.1    JAP96893.1    GDHF01025030    GDHF01017700    JAI27284.1    JAI34614.1    GAKP01018000    GAKP01017996    JAC40952.1    JRES01001695    KNC20887.1    GECZ01004987    JAS64782.1    GECU01031602    JAS76104.1    CH940649    EDW64455.1    CH933807    EDW12463.1    OUUW01000004    SPP79857.1    CP012523    ALC39125.1    DS233926    EDS32355.1    CH479187    EDW39586.1    CH379060    EAL34024.1    KRT04404.1    CH916372    EDV99359.1    CM000157    EDW88106.1    CH480818    EDW52627.1    CM000361    CM002910    EDX04728.1    KMY89817.1    KA648375    AFP63004.1    ALC39343.1   
Pfam
PF00134   Cyclin_N
Interpro
IPR013763   Cyclin-like        + More
IPR006671   Cyclin_N       
IPR036915   Cyclin-like_sf       
IPR012399   Cyclin_Y       
SUPFAM
SSF47954   SSF47954       

Ontologies

Topology

Length:
336
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.44487
Exp number, first 60 AAs:
0
Total prob of N-in:
0.13266
outside
1  -  336
 
 

Population Genetic Test Statistics

Pi
243.194958
Theta
207.69999
Tajima's D
0.415787
CLR
0.067325
CSRT
0.492275386230688
Interpretation
Uncertain
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