Gene

KWMTBOMO01827  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005980

Annotation

PREDICTED:_zinc_finger_protein_Xfin-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(-):5760390-5787035      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.875 Nuclear   Reliability : 2.467

CDS

ATGCTTCAGCAGATGTCCTCGCCGGCTGACGCGCAATTCGGCGAGGTCACGACAGTCGCGCGCGCCTTCGAAGGCCGCCTCCTCGGCGACGTGTCCTCTGGCGCTTCTTCAGACACCGCCGAAGATTTTGAATTGCCCCACTGTAAGATAAGAAGAAACTACAACTGTACAAAGTGCACGTTCTACACTCAAAATCCACGCGCTTATCTGGTACACACGCGTGACACTCATTTCGTTAAGTTGAAGATATATGAATGTCCCCACTGCATCTATGCCTCGAGGCACAATCAGAAACTCGTAAGACACGTTAAGATGGTCCATGATGACTTACTTTTGCAAACGACCGCAAAAGTCGATTTCGAGATGCCCCAAACAAATGGTGGCTATGTTGAAATTGAATCGCAAGAACGGCAAGATAGAATGGAAGATATGCTAGAAGAGATCGAGGAAATCGACGATATACAGCTTGACATGGATGAGTGCACTGATGATAAGACTGACCGTTCTTGCGAAATAGAATTTGAAGAAGAACGATTTAGAGGCGACACTCCGTTGAAAGGCAAGGATAAACTTTTCTCCTGCGATAAGTGTAACTATGTGACACATTTACGAGCGCGATTCACTAAGCACGTCAAATATCATTCGATGCCCATGATCAAATGCATAGTTTGCGACTTTAGAACACCGTACAAATGGAACTTAGACCGTCACATGAAAAATCACGGTGGTATCGGAAGTTTTAAATGTTCAATGTGCAACTTTACTGCGGATATAAAGCAGAGTTTGACTGTACATGAAATGAATCACCACACGCCACAGGCGGGCCACTCGCACGTCAATCGTCGTCGCAATCGGGTGGGCGCCAGTGACGCAGCACAAGCGGACGAAGCGAGTTTGCTTCTCATAAAGGAAGAGGAAGGGAGCGGCGATTCACGATCCTCACACTCCGCTTCGGAAATGGGATTACAGAATATGGAGAAGGACCTCTCCTGTAACAGTGATTCAAACGACACCTCCGAAGCCCCAAACAAGATCTCACATTTTGTTCACAATGATCACAGTCAGCAGTCGCCGAGCAGCGGCACAGACGACTCAAAGGGGCAAAAGAATAAAAGAACTCCTCGACCCCTGCCCCAACTCATACCCCTAAACACGTCAACGCCCAATCAAAACAAGACCACTAACAATGAGCCGCCAGCCAAAAAAATGAAATTATGCTCAGATACCGAAACGCCCGACACTATGATCTGTAATCCAGAAAGTCCTACATACGACAATTGCTTTACCAATAATACATTTATGAAGGATACCGAGTGCCGAAAGAAAAACGAATCATTCTTTGACAAACTAAAAAAGCGACTCTTGACAGAAACCGGCGAGGAAGGATCGCTTATATGCAAAAACTGTAGCTTTCAAAGTAAATGTTTGTCAGAGCATTCGGTACACGAAAAGAATTGCATACCATTAGCGAGCAGAAGCATGACAAACACGCTAATGCCTAGTTCAGGTTCAACGCGTTGTCAGAACTGTAGACACAGATGTAAATCTAGTGCCGATTTATATGTTCATATGCAGAGCTGTGGGAAAAGTGCTAATTTAAAACAAAACGAAATTTCTCAGGACCAGAATTCGGCAAGCGACGCCGGTAATATAAATCGTGATAAAGACGTTGAACCGCATCCAATGGAGAACGTTGTTTTTGTTTGGAACAATATCGAGCCGAACGAGCCAAACAAGTTCGAAATACCATTGGACATAAACATAAATGACGATTCAACGCTTCCAGATATGACGCGAACCTACGAAATTGAGTTAGTCGATGAAAACGAAAGTATGAACTTATCGCCGAGTCAGGCGGCCGGTAAAAACGTGTTCAAATGTCCTCATTGTTCCTTCTGGGCCTCGACTGCGTCCAGATTCCACGTCCACATCGTAGGACATTTAAATAAAAAACCATTCGAGTGCTCTATCTGCAAATATAAATCGAACTGGCGGTGGGACATAACGAAGCATATCAAATTAAAATCCGTTAGAGATCCAGATCACAACGATGCCAAAGTATTGATGACCGATGAAACGGGCAGAAGGAATTACAGCAAGTACACAAAATTCTTAGCCATACCTGTGCCTAATGAAAATGGAAAAACTGAATTTCGCTATCTCGACCCTAACACTTACGTTGACGACACTATGGATGTCGACGACCCCGCCGACGAATTCAACGATACCAACACAATATACGATATGCAACCGTTAAACCTCCAAACTAAGCACTTTGAATTCCAAACATCACTTGAGTCCATCGCAAATCAAGATAAGAAAGTAATAAAAAGGACACTCTGGAAGTGTAAAAAATGCAATTACAAAGATCCATCAAAGGATGCGTTATTAGAGCACGTCCGTGAACACGCTAAGGTGGAAGGTGCGAGTGATGAGGTACGAAATAAGAAACCAGAAAGTTCTATAGATCCGGCAGACTTGGCATATCGTTGTGGGCACTGCCACCAGCTATCGAATTGGAAACACGTAATACAGCGTCACTGTCGCTTGAAGCATAACGGCGTTATAAAAGTCATAACAACGGTCAAACAGAAGCCAGAACTGAACAGTGCCGTTGGATCGTTAACAATCGACGACATCACATCTGACTTTTGTACCAAATGTCCATTCAAATCGAACGACAAACAAGCACTCTTTATTCATTTACAACAACACCAACCGTCAACAAACTCCGTATTTAAGTGCTACTTTTGTCCATTTTTTGTGAAAAACGAAAGTGAATTGATACAACATTTACATGTTCACGGCGTGGAAGATCCAGAAGATTTTATCTCTAAGGCCAGGGGATGCAGATCGCCATTGCCAGACTTAGCCTCTGCCTTAACGCCCCAAGGTGCTTCGACTAAACGACATAGATGTTCAGAATGTCCATATGAGACAAATAGCAAATCGCAGTATATGTATCACGAACAATTTCACCGGTTACCTGCAGATACTCCTTATAAATGCCCTGAATGTAACTATAGCGTTTCGAAACGGCATTTGCTTCATCAGCACTTACGAGTGCATGGAATTCATCCAAAGAAAAATGAGAGCGAAGCGGAACTAGAACTAATGTTAAGGGCCGATGATATTTCCGATGCAGCCTCAAATTCGTTCAATGAAATTCCGTTTGTTTGGGTGTCGGCTAAAAACGAGTTCCACAAAATGTACAAATGTCGTTATTGTTCGTATGTAAATTCGCAAAAATGCAAAATCCCAATACACGAGAAAATTCATTGCCTCGTTTTCGAAAACGACGCATCCGTTTACTACAAATGTTCCGAATGTAAGTTTACTTTTGACAATGCGGTAAAATTGGCCGAGCATTCCAAATCACACGGTGACTTATACGGACGGATTTATTGCCCCGTCGCGGACGACATTCCTGACGATGAACAAGTGGCCAAATTACGTAAGGTCATTGAACTTGAAAAATTGGGAAATAATGATTCGTCGCCCCCTCATGAGGATGGTGAAAGCAAAGAAATCAAAACTTTGTATTTCTGTCAACTGTGTCCTGCACGTTATTTTACGGATACCGAACTACAAGTTCACGATAAAAATCATAATTCAAACCTCTCCGTCAAATGTAAAAACTGCAACTTCGCGGTATCAGAAGAAAGTGAATTGGTTTTACATGCCGTAGTTCATTCTGATGAGTACCACACGAAAACCAGAATGCTTAAATTCGCTCACAATTCTCATCCCGCCCACAGGCCGCCTTGTTTGGAGTCTATTCGCACCGAAAGTGGCGTTGAAATTTGGGTGATCAATCACAATAAAAAAAATGAAATTGTAGAACTAAACAACAAGAAATCCCAAGAAGTCAAACATACACCTAAACAATATAATTGTAAAGAATGTCCCGCCAAATTCTTTAAAGGTTCTGCTCTGAACTACCACATGGGCTTACACGGCGGCGAAGGCGAATATAAATGTAAAAGTTGTAGTTATGCTGTCAAAAACATTGGCAATTTGGCAAAACACGAAGCATTACATGAAAAAGAAAATAAAAATTCCAATGGCGATTATGAATCAGGGGAAGACGCGGATTACAAAAACATTCCAATTTCAGGAACAGACTTATTCCAGAGAAAGACCGAAGCGCAGAAAAGAGTACTCACCGATAAAGATAAATTAGTTAAACCCAACGATCACTTTCCACCCGTGCTTCAAGCCGATCCACAATTTGGATTCTTGATGCATGGTAATCCAGAATTCATATATCCAACTTATCTTAAAAACGGACGTCAGAAAGAAAAACGATACAAATGCCATAAATGTCCGTCTGCGTTTGAAAAAAGGGAACAATATAAAATACATTTATCTTTACATGGCTCAAAACAGAGGTACAAGTGTGAACTTTGCGACTACTCCGTTAAATATTATGCAAATTATGTCCAACACATGCGGAAACATCAAATGAACGATGAAGCACAAGCCGAGAGAAAGAAGGGCGGTTGTGATTTCGTCGAAACTGAAATACAAGATTCAGATAATTTGAAAGGTCCGGAATGTGCGGATAACCTTAAACTGGCAGTCAAAACAATTCCAAAAGGAATGCCTAAAACGGACTTCCAACAATTTTCATATAGAGATCAACAAACACTACGCTTATTACAACGTAGGCGATCAATGTCTTCTATTAACAAAGATGCAAGTGCAACTGAATCTACAAATAAGCGTAAATTGCACTCGTGCCTTCTGTGTCCTTACACTAACCATCGCCAGGACGCTTTAAATAACCATTACAAAAGACATGACGATACGGACCTCGTTAACGTTGCAAATTCGGCAAATCATAAATGTAATTATTGCGATTTGATAGTCCTACAATCACATTTCTTGAAAGAACATTTAAAAACACACTTTAACTATCAGAAAGCGTTGACTCCTGAATGTTTTGTTGCAAGTGAAGACGTCAATTTTACAATCACTAAAATCGACAATGAAAGTCAGCCGTACGATCTCAGATTAGAAATTCAAAATAAGGATTTGACATGCAACACTGATAAAATATTTGTCAACATTAAAACTGGTGAATTATTGGTTTAA

Protein

MLQQMSSPADAQFGEVTTVARAFEGRLLGDVSSGASSDTAEDFELPHCKIRRNYNCTKCTFYTQNPRAYLVHTRDTHFVKLKIYECPHCIYASRHNQKLVRHVKMVHDDLLLQTTAKVDFEMPQTNGGYVEIESQERQDRMEDMLEEIEEIDDIQLDMDECTDDKTDRSCEIEFEEERFRGDTPLKGKDKLFSCDKCNYVTHLRARFTKHVKYHSMPMIKCIVCDFRTPYKWNLDRHMKNHGGIGSFKCSMCNFTADIKQSLTVHEMNHHTPQAGHSHVNRRRNRVGASDAAQADEASLLLIKEEEGSGDSRSSHSASEMGLQNMEKDLSCNSDSNDTSEAPNKISHFVHNDHSQQSPSSGTDDSKGQKNKRTPRPLPQLIPLNTSTPNQNKTTNNEPPAKKMKLCSDTETPDTMICNPESPTYDNCFTNNTFMKDTECRKKNESFFDKLKKRLLTETGEEGSLICKNCSFQSKCLSEHSVHEKNCIPLASRSMTNTLMPSSGSTRCQNCRHRCKSSADLYVHMQSCGKSANLKQNEISQDQNSASDAGNINRDKDVEPHPMENVVFVWNNIEPNEPNKFEIPLDININDDSTLPDMTRTYEIELVDENESMNLSPSQAAGKNVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSICKYKSNWRWDITKHIKLKSVRDPDHNDAKVLMTDETGRRNYSKYTKFLAIPVPNENGKTEFRYLDPNTYVDDTMDVDDPADEFNDTNTIYDMQPLNLQTKHFEFQTSLESIANQDKKVIKRTLWKCKKCNYKDPSKDALLEHVREHAKVEGASDEVRNKKPESSIDPADLAYRCGHCHQLSNWKHVIQRHCRLKHNGVIKVITTVKQKPELNSAVGSLTIDDITSDFCTKCPFKSNDKQALFIHLQQHQPSTNSVFKCYFCPFFVKNESELIQHLHVHGVEDPEDFISKARGCRSPLPDLASALTPQGASTKRHRCSECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPKKNESEAELELMLRADDISDAASNSFNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPIHEKIHCLVFENDASVYYKCSECKFTFDNAVKLAEHSKSHGDLYGRIYCPVADDIPDDEQVAKLRKVIELEKLGNNDSSPPHEDGESKEIKTLYFCQLCPARYFTDTELQVHDKNHNSNLSVKCKNCNFAVSEESELVLHAVVHSDEYHTKTRMLKFAHNSHPAHRPPCLESIRTESGVEIWVINHNKKNEIVELNNKKSQEVKHTPKQYNCKECPAKFFKGSALNYHMGLHGGEGEYKCKSCSYAVKNIGNLAKHEALHEKENKNSNGDYESGEDADYKNIPISGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGFLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGGCDFVETEIQDSDNLKGPECADNLKLAVKTIPKGMPKTDFQQFSYRDQQTLRLLQRRRSMSSINKDASATESTNKRKLHSCLLCPYTNHRQDALNNHYKRHDDTDLVNVANSANHKCNYCDLIVLQSHFLKEHLKTHFNYQKALTPECFVASEDVNFTITKIDNESQPYDLRLEIQNKDLTCNTDKIFVNIKTGELLV

Uniprot

H9J8Y8   A0A2A4K8S7   A0A2H1WPK8   A0A0L7LD65   A0A194R332   A0A1E1WPE5   + More
A0A212EN48   A0A437BS97   A0A2A4KAE4   A0A194PLT6   A0A1B6ENC2   A0A1B6M9Q0   D6WJU8   A0A1B6CSK3   A0A139WHL1   A0A1B6DMT3   A0A1B6CYB4   A0A1B6DXD7   A0A069DY79   A0A023EWF8   A0A0K8SB16   A0A146MGD8   A0A0A9X010   T1HAD8   V5I886   V5G060   A0A1B0DB89   A0A0C9RL55   A0A195C5L8   A0A2A3ELH6   A0A088A200  

Pubmed

19121390    26227816    26354079    22118469    18362917    19820115    + More
26334808    25474469    26823975    25401762   

EMBL

BABH01004853    NWSH01000024    PCG80621.1    ODYU01010122    SOQ55011.1    JTDY01001585    + More
KOB73453.1    KQ460855    KPJ11929.1    GDQN01002165    JAT88889.1    AGBW02013714    OWR42925.1    RSAL01000014    RVE53296.1    PCG80622.1    KQ459601    KPI93953.1    GECZ01030349    JAS39420.1    GEBQ01013664    GEBQ01007315    JAT26313.1    JAT32662.1    KQ971343    EFA04498.1    GEDC01020772    JAS16526.1    KYB27480.1    GEDC01010320    JAS26978.1    GEDC01018812    JAS18486.1    GEDC01006955    JAS30343.1    GBGD01000044    JAC88845.1    GBBI01005092    JAC13620.1    GBRD01015356    GBRD01015355    JAG50471.1    GDHC01013029    GDHC01000632    JAQ05600.1    JAQ17997.1    GBHO01033164    JAG10440.1    ACPB03014843    ACPB03014844    ACPB03014845    GALX01005120    JAB63346.1    GALX01005121    JAB63345.1    AJVK01004694    AJVK01004695    AJVK01004696    AJVK01004697    GBYB01014057    JAG83824.1    KQ978251    KYM95925.1    KZ288215    PBC32615.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000007151    UP000283053    + More
UP000053268    UP000007266    UP000015103    UP000092462    UP000078542    UP000242457    UP000005203   

PRIDE

H9J8Y8   

Pfam

PF00096   zf-C2H2        + More
PF01480   PWI

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR003656   Znf_BED       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR002483   PWI_dom       
IPR000571   Znf_CCCH       
IPR035979   RBD_domain_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

H9J8Y8   A0A2A4K8S7   A0A2H1WPK8   A0A0L7LD65   A0A194R332   A0A1E1WPE5   + More
A0A212EN48   A0A437BS97   A0A2A4KAE4   A0A194PLT6   A0A1B6ENC2   A0A1B6M9Q0   D6WJU8   A0A1B6CSK3   A0A139WHL1   A0A1B6DMT3   A0A1B6CYB4   A0A1B6DXD7   A0A069DY79   A0A023EWF8   A0A0K8SB16   A0A146MGD8   A0A0A9X010   T1HAD8   V5I886   V5G060   A0A1B0DB89   A0A0C9RL55   A0A195C5L8   A0A2A3ELH6   A0A088A200  

PDB

5V3M     E-value=1.07933e-11,     Score=175

KEGG

101744619    no KO assigned | (RefSeq) zinc finger protein Xfin-like

GO

GO:0003676   GO:0003677   GO:0010468   GO:0000979   GO:0006397   GO:0003723   GO:0046872   GO:0008270   GO:0006357   GO:0032784   GO:0006355   GO:0004651   GO:0005634  

Length:

1698

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  1698

 

 

Pi

259.119859

Theta

203.588663

Tajima's D

0.927459

CLR

0.314828

CSRT

0.64226788660567

Interpretation

Uncertain