Gene

KWMTBOMO01826  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006173

Annotation

transcription_elongation_factor_S-II_[Bombyx_mori]

Location

Bomo_Chr4(+):5758366-5759803      View in EpiBrowser

Full name

Transcription elongation factor S-II      

Alternative Name

RNA polymerase II elongation factor DMS-II
TFIIS

Location in the cell

PlasmaMembrane   Reliability : 4.875

CDS

ATGAGCGTTGAAGAAGATGTTATGAAAATACAGAAAAAGCTTACTAAAATGACATCTGAAGACGGCACGGGTCAAGAAGAAGCGTTAGAACTTCTGAAAGCACTTCAAACAATGGCTATCAACTTGGACGTCTTAACGAAAACAAGAATAGGAATGACTGTCAATGCTCTGAGAAAATCTAGCAAAGATGATGAAGTTATATCGCTTTGTAAAACACTAATTAAAAACTGGAAAAAGTTTTTGTCGACACCAAACACGACTAAGGACAATGGAAATTCATCCAAATCTAAAAAAGAAGGTAAAGACAAAGATAAAAAAGAAGATAGAGATAAGAAATTGCCAGCATCATTTCCACCACAGTCCAACACTACAGATGCAGTAAGGCTCAAGTGTAGAGAACTTCTAACCCAAGCACTCAAGGCTGCTGGTGAAACTTCCAATGCTTGCGGATCTCCTGAAGAACTTGCTGAAGAGTTAGAAGAGTGTATTTATGCTGAATTCAAAAACACTGACATGCGTTACAAAAACAGGGTTAGATCAAGAGTTGCTAACTTGAAAGATCCTAAGAACCCAACATTACGTACAAATTTCTTTAATGGTGTCATTTCAGCATCACGTTTAGCTAAAATGACTCCTGAAGAAATGGCAAGTGATGAAATGAAAAAGTTGAGAGAAAAGTTCATTAAAGAAGCTATTGATGATGCACAGCTTGCCACAGTTCAAGGCACCAAAACAGAAATGTTAAAATGTGGCAAATGCAAAAAGAAGAACTGTACCTACAATCAACTACAAACAAGAAGTTCCGATGAACCTATGACCACATTTGTCCTTTGTAATGAATGTGGTAATCGCTGGAAATTTTGCTAA

Protein

MSVEEDVMKIQKKLTKMTSEDGTGQEEALELLKALQTMAINLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLSTPNTTKDNGNSSKSKKEGKDKDKKEDRDKKLPASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPEELAEELEECIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLREKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRWKFC

Miscellaneous

S-II binds to RNA-polymerase II in the absence of transcription.

Similarity

Belongs to the TFS-II family.

Keywords

Complete proteome   DNA-binding   Metal-binding   Nucleus   Reference proteome   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Transcription elongation factor S-II

Uniprot

Q1HQ13   A0A194R2B3   A0A212EN69   A0A194PMJ0   A0A2H1WPL0   A0A3S2LT57   + More
A0A2A4K974   S4PMU1   A0A0L7LE19   A0A2J7QYY3   A0A067R679   D6WJB1   A0A1W4W5Z2   A0A0K8TRH6   A0A1B6CUU0   Q17L48   A0A1S4EYX3   A0A1Y1L765   A0A1L8DH18   A0A023EMX9   A0A0T6AVA4   T1DGQ7   A0A182G2J9   A0A1B0GNB8   T1E273   B3MMA2   A0A0M5J1S9   A0A1I8NPU9   Q29P72   B4GK82   A0A1Q3EU47   A0A0J9R248   M9PFV9   P20232   B4HXM1   A0A0N7Z9H5   B3N5N7   A0A3B0K725   A0A023F953   A0A336M7E8   A0A0V0GA48   A0A224XPJ8   A0A0C9R8I7   A0A069DS80   A0A084VYE3   A0A026WIF4   A0A1Q3FDY2   A0A158NPH3   A0A195BA67   E2ACU5   A0A336LVW6   A0A0J7L8V4   A0A1Q3G1J1   A0A2A3EJQ6   V9IF07   A0A088A1K6   R4WSV9   U5EY68   K7JA93   A0A1S4JDE4   A0A0A9YCX9   T1HP11   B0WC04   A0A182G2K0   A0A195EUZ9   B0WC05   F4WNZ9   A0A154PMF1   A0A195E627   A0A2H8TYJ1   A0A2S2NC30   E0VT44   J9JYJ3   A0A1V9XQZ1   N6U6L7   A0A2H8TP85   R4FPX7   A0A1B6LS96   A0A0P5U9W5   A0A195CN06   A0A0P5ZVC4   A0A0P5V671   A0A0P5E2D0   A0A0P4Y4K2   E9GR89   A0A0P6HLK0   A0A151WRA7   A0A0N8CEG8   A0A0P5TTR6   A0A3S1BGD6   A0A293MEV4   T1J687   A0A0B7A7F5   A0A1D2MLU8   A0A2C9JR05   A0A2R5LL96   A0A226F1N5   A0A131XQP3   A0A023FV83   U4UGQ9  

Pubmed

19121390    26354079    22118469    23622113    26227816    24845553    + More
18362917    19820115    26369729    17510324    28004739    24945155    24330624    26483478    17994087    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    2243775    7772609    10471707    12537569    27129103    25474469    26334808    24438588    24508170    30249741    21347285    20798317    23691247    20075255    25401762    26823975    21719571    20566863    28327890    23537049    21292972    27289101    15562597    28049606   

EMBL

BABH01004853    DQ443239    ABF51328.1    KQ460855    KPJ11928.1    AGBW02013714    + More
OWR42926.1    KQ459601    KPI93954.1    ODYU01010122    SOQ55010.1    RSAL01000014    RVE53297.1    NWSH01000024    PCG80619.1    GAIX01000001    JAA92559.1    JTDY01001585    KOB73451.1    NEVH01009082    PNF33794.1    KK852860    KDR14833.1    KQ971343    EFA04452.1    GDAI01000865    JAI16738.1    GEDC01020056    JAS17242.1    CH477219    EAT47378.1    GEZM01068531    JAV66907.1    GFDF01008407    JAV05677.1    GAPW01002865    JAC10733.1    LJIG01022774    KRT78789.1    GALA01001566    JAA93286.1    JXUM01040106    KQ561232    KXJ79286.1    AJVK01013111    GALA01000994    JAA93858.1    CH902620    EDV31862.1    CP012523    ALC39718.1    CH379058    EAL34421.1    CH479184    EDW37048.1    GFDL01016218    JAV18827.1    CM002910    KMY90327.1    AE014134    AGB92992.1    X53670    L26091    AY051843    CH480818    EDW51801.1    GDKW01000531    JAI56064.1    CH954177    EDV57996.1    OUUW01000046    SPP90007.1    GBBI01000690    JAC18022.1    UFQT01000634    SSX25950.1    GECL01001853    JAP04271.1    GFTR01004668    JAW11758.1    GBYB01004405    GBYB01004407    GBYB01004409    GBYB01008919    JAG74172.1    JAG74174.1    JAG74176.1    JAG78686.1    GBGD01002377    JAC86512.1    ATLV01018360    ATLV01018361    KE525231    KFB42987.1    KK107207    QOIP01000002    EZA55441.1    RLU25535.1    GFDL01009272    JAV25773.1    ADTU01022546    KQ976542    KYM81089.1    GL438582    EFN68743.1    UFQS01000222    UFQT01000222    SSX01580.1    SSX21960.1    LBMM01000257    KMR02736.1    GFDL01001389    JAV33656.1    KZ288241    PBC31271.1    JR042625    AEY59645.1    AK417802    BAN21017.1    GANO01000490    JAB59381.1    AAZX01002936    AAZX01004281    AAZX01004313    AAZX01008587    AAZX01012701    AAZX01014769    AAZX01017293    GBHO01014133    GBRD01015541    GDHC01011969    JAG29471.1    JAG50285.1    JAQ06660.1    ACPB03014845    DS231884    EDS43064.1    JXUM01040107    KXJ79287.1    KQ981965    KYN31709.1    EDS43065.1    GL888243    EGI63930.1    KQ434978    KZC13032.1    KQ979608    KYN20337.1    GFXV01006413    MBW18218.1    GGMR01002049    MBY14668.1    DS235759    EEB16550.1    ABLF02035743    MNPL01005592    OQR75926.1    APGK01037237    KB740948    ENN77285.1    GFXV01004005    MBW15810.1    GAHY01000053    JAA77457.1    GEBQ01013396    JAT26581.1    GDIP01119754    JAL83960.1    KQ977574    KYN01847.1    GDIP01051510    JAM52205.1    GDIP01119753    JAL83961.1    GDIP01147860    GDIQ01224916    JAJ75542.1    JAK26809.1    GDIP01233840    JAI89561.1    GL732559    EFX77969.1    GDIQ01017062    JAN77675.1    KQ982807    KYQ50396.1    GDIP01139703    JAL64011.1    GDIP01139702    JAL64012.1    RQTK01000247    RUS83339.1    GFWV01019519    MAA44247.1    JH431873    HACG01029035    CEK75900.1    LJIJ01000880    ODM93973.1    GGLE01006174    MBY10300.1    LNIX01000001    OXA63334.1    GEFH01000575    JAP68006.1    GBBL01001554    JAC25766.1    KB632348    ERL93164.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000283053    UP000218220    + More
UP000037510    UP000235965    UP000027135    UP000007266    UP000192223    UP000008820    UP000069940    UP000249989    UP000092462    UP000007801    UP000092553    UP000095300    UP000001819    UP000008744    UP000000803    UP000001292    UP000008711    UP000268350    UP000030765    UP000053097    UP000279307    UP000005205    UP000078540    UP000000311    UP000036403    UP000242457    UP000005203    UP000002358    UP000015103    UP000002320    UP000078541    UP000007755    UP000076502    UP000078492    UP000009046    UP000007819    UP000192247    UP000019118    UP000078542    UP000000305    UP000075809    UP000271974    UP000094527    UP000076420    UP000198287    UP000030742   

PRIDE

Q1HQ13    M9PFV9    P20232   

Pfam

PF07500   TFIIS_M        + More
PF01096   TFIIS_C
PF08711   Med26

Interpro

IPR001222   Znf_TFIIS        + More
IPR036575   TFIIS_cen_dom_sf       
IPR003618   TFIIS_cen_dom       
IPR003617   TFIIS/CRSP70_N_sub       
IPR006289   TFSII       
IPR035100   TF_IIS-typ       
IPR017923   TFIIS_N       
IPR035441   TFIIS/LEDGF_dom_sf       

SUPFAM

SSF47676   SSF47676        + More
SSF46942   SSF46942       

Gene 3D

1.10.472.30     1.20.930.10    

ProteinModelPortal

Q1HQ13   A0A194R2B3   A0A212EN69   A0A194PMJ0   A0A2H1WPL0   A0A3S2LT57   + More
A0A2A4K974   S4PMU1   A0A0L7LE19   A0A2J7QYY3   A0A067R679   D6WJB1   A0A1W4W5Z2   A0A0K8TRH6   A0A1B6CUU0   Q17L48   A0A1S4EYX3   A0A1Y1L765   A0A1L8DH18   A0A023EMX9   A0A0T6AVA4   T1DGQ7   A0A182G2J9   A0A1B0GNB8   T1E273   B3MMA2   A0A0M5J1S9   A0A1I8NPU9   Q29P72   B4GK82   A0A1Q3EU47   A0A0J9R248   M9PFV9   P20232   B4HXM1   A0A0N7Z9H5   B3N5N7   A0A3B0K725   A0A023F953   A0A336M7E8   A0A0V0GA48   A0A224XPJ8   A0A0C9R8I7   A0A069DS80   A0A084VYE3   A0A026WIF4   A0A1Q3FDY2   A0A158NPH3   A0A195BA67   E2ACU5   A0A336LVW6   A0A0J7L8V4   A0A1Q3G1J1   A0A2A3EJQ6   V9IF07   A0A088A1K6   R4WSV9   U5EY68   K7JA93   A0A1S4JDE4   A0A0A9YCX9   T1HP11   B0WC04   A0A182G2K0   A0A195EUZ9   B0WC05   F4WNZ9   A0A154PMF1   A0A195E627   A0A2H8TYJ1   A0A2S2NC30   E0VT44   J9JYJ3   A0A1V9XQZ1   N6U6L7   A0A2H8TP85   R4FPX7   A0A1B6LS96   A0A0P5U9W5   A0A195CN06   A0A0P5ZVC4   A0A0P5V671   A0A0P5E2D0   A0A0P4Y4K2   E9GR89   A0A0P6HLK0   A0A151WRA7   A0A0N8CEG8   A0A0P5TTR6   A0A3S1BGD6   A0A293MEV4   T1J687   A0A0B7A7F5   A0A1D2MLU8   A0A2C9JR05   A0A2R5LL96   A0A226F1N5   A0A131XQP3   A0A023FV83   U4UGQ9  

PDB

6O9L     E-value=1.69591e-58,     Score=571

KEGG

732942    K03145 transcription elongation factor S-II | (RefSeq) transcription elongation factor S-II

GO

GO:0003746   GO:0005634   GO:0006355   GO:0006351   GO:0008270   GO:0003676   GO:0046872   GO:0006368   GO:0003677   GO:0006357   GO:0032784   GO:0006397   GO:0004651  

Subcellular location

Nucleus  

Length:

288

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0004

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.03932

outside

1  -  288

 

 

Pi

235.263938

Theta

193.25756

Tajima's D

0.791095

CLR

0.459789

CSRT

0.595020248987551

Interpretation

Uncertain