SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01821  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006171
Annotation
PREDICTED:_fibronectin_type-III_domain-containing_protein_3a_isoform_X2_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.44 Nuclear   Reliability : 1.252 PlasmaMembrane   Reliability : 1.155
 

Sequence

CDS
ATGGTTGGCGTGGGCGTCGCGGAGGCAGGGGGTGGGGGAGGCGGCGTCCCCGGCGACGGCTACTATGGGGAGTACTACCCTCCGGAGCAATACTACGTACCCCCGGACATGTGTCCTCATCCACAGCAACATCCGCAACATGCACACATGTGCACTGTGTTACCTGAATACGGCGGCCTACCAGTGGTTACGTCGGGCACCATGATGCCGCCTTTGATGCCACCAGTGCTCGACGAGAACATGCGCCAATATTTGATGCACCAGCACGCTCAACACCCGCATCACGCGCCGCATCATCAACCGCCGCACCACCAGCCCCCGCATCATCAGCCGCCTCCGCATCACCAACCTCCTCATCATTATGGTCCAACCAATGGTGCTGGTGGTCCACAGCATTTCTATGGTGCGGGGTACCCAGCCCATTTTCACCATGTTCCCCCACACCATATGCAGCATTCGCCGCCACCGCCTATATACCAGAAGGATGAGCGAACTCAGAGGCAGTACTCCAAGTTAAAACAGAAGTTAGAAAGAAAAAACAACAATAGAAATAATGGCGTGGTAACAGATGTCACGTCGGGCACGAGTACGCCGACGCTGTCCCCGCGCAAGGAGTTGAATGGCCGAGGGGGTACCACATCAGGGGCCTGGTCAGAGGGCGAGGGATCGTCCGCCGGTGCCTCAGTGCACAGCGACGAGGACGACACACAGGCTATATTGGAGTTAATGTCTACTGCTCGTAAACCACAGGTCAGCGACATGACACCTACCAGTGCCTTAGTGCAGTGGAACTCTCAACTTCCGGAAGGTGTCCCGCCGCCCAACCTTGAATTAACCTACGATCTAATACTCGGAGATCGTGGCCGGTACAAAGCCATCTACAGCGGCCCCTCTCTTTCTTGCAGAGTTCGTGATCTGCGGCCGGGATGCGAGTACTCGGTGTACCTGCAGATCCGCCCCGGGGCCGTCACGGGCGCCACCACGGAGGCGGTGACGTTCCGCGCGCCCGCCGCCCCGCCCGACCGCGTGCCCGCCCCCAAGGTCACGCAGCGGTCGCGCAACTCGCTGCTGTTGCGCTGGCCCTCCGCCGCCGACAACGGAGCGCGTCTGCAGTACTACGTGCTCGAAATGGACGACGGCGACGGCTTCAAGGAGATATCGCGCCCGCGCACTCGCCAGCACTCCGCTACCGGCCTGCGTCCCCAAACGCGATACATCTTCCGCATCGCCGCTGTTAACGAGTGCGGTCGAGGTGAATGGAGTGAAGAGATAACCGTGTGGACTTACGGGTTGCCACCCCCCGCGCCCGCTCCGCCCGTGCTCGACTCTGCCGCCTCCGAATCTCTATCTCTGTCTTGGGAACGCCGAGGCGAAGAAGAATTCACGCTCCAAATGGACGATATCGCTCGCGGGCACGGTTTCCTGCCCGTCTACAATGGTCCAGATCGAACGCACGTGTGTAAGGGTCTGCGTCGTGCATCCGACTACCGTTTTAGATTATGCTGCGAGACCACCGACGGACAAGGTCCTTATTCGACAGATGTGACGTACCGCACCCTACCCGAACGCCCTGGCGCACCAGGTCGACCCTCTGCCAAGGGCAAGATACATTCCCGAGCATTTCGCTTGCGGTGGGAGCCGCCTTCCGATGACGGAGGAGCCCCGGTAGAACAATACACTCTCGAACTCGATGCTGGCGATGGATTCCAGTCCGCGTACTCCGGTCCTGATAGAGAAGCGCATTGTGATCGACTTCAACCAGGTACTGACTACCGCGCACGAGTGCGGTGCTTGAATTCGGCCGGCGAGAGCGACTGGTCAAGTACCGAGACTGTCACCACGGATGCCACCATTCCTGCTGCTTGCGATGCGCCCGAGCCCACGAGTGAGCCGCGCGCTACTACCCTACCTTTACGTTGGAAACCTCCCAGCTGCACCGGCGGTACCCCTCTCACCGAGTATAGAGTTGAGGTGGCAAACGCGCAAGGAATCGCCCGCCTGGCTCACGCTGGCTTAGAAACGGAATGCATAGTACGAGAATTGTCTCCCGGTCGCCCGTACCGCGTGTGGGTAACCGCGTGCAATCGGGTCGGCTCCGGCCCGCCGTCCTCCGTCCTCGAATTCGAGACTGCGGCCGCCCCCCCGGATGCTCCCGACGCGCCTATCGCGAACGTCCAAAGCCCCAACGCAGTCCAACTCGAGTGGACTGCGCCCCCCGATAACGGCGCTAATATTATAGATTATAGAGTGGAAATGAGCGCAGCCAATGTCGACGATGCCTACACAGAGATATATCGGGGGTCGGAAACGAACTGTTCCATCGATCGTCTGACACCATTCACGCCCTACTTTTTCCGAGTGTGCGCAACGAATGTCGCCGGCCGGGGAGCGTGGTCCGCGGTACGGGACGTGCTGACTCCCCGCGCACCTCCCGCAGCCCCCTCTGCTCTGCGGTATGAAGCTACTGCAGACTCACTGCGTTTGCAGTGGCGCGCGCCGGCCTGCCACGGAGCTGATATCTTACAATATCGTGTCGAGGTTGGCGACGCAGCATTCGACACTGAAGGACCCACACCCGAACGGCTCGTCGAGGGACTCGAACCAGACGTGTCGTACCGTGTTCGCGTCGCCGCCCTAAACGAACTCGGGCTCGGCGATTGGAGTGAAGAATCGCGAGCCCGCACCCGACCTCCACCACCTGTGCCACCGATACTCCGGTGCTCCCCACCCGCTCATAACCACCTCCGACTCGAGTGGGACGCAACCGGAACCGAAGGAGTACATTATTGCGTCGAGATGCGTGCCCCGGACGGTCGCGAATTTCGTCCCGTGTATCGGGGAAGTGCACGTTCCTGTAAAGTGAAAAAATTGCGAGAGTCCTGTGCCTATGCCTTCCGGATACGAGCGGCGGACGAGAGAGGCGGGCGCGGGCCGTGGTCGGAGCCGGTCACGTTCGAGACGGGCAGCGCCCCGCCCCCCGCGCCCCGCGCCCCCGTGCTGCAGCTCCTCGCGCCGCGCCTTGCCCTCGTACAGTGGGACGTCATCGACGACGCTGAATACGTTTTGCAGTCCGCCCGCGGCAAGGATGCACTCTTCAAACAGGTGTACGCGGGTCGCGACACGCAGTTCCGGCTCGAGGAGCTGGAGGCGGGCGGCGAGTACGTGGTGCGCGTGTGTGCCGTGCGCGGCGGGCTGGCGGGCGCGTGGTCGGCGCCGGCGCGTCTACTCGTACCCGTGCCCGCAGCCGCGCCGCGCGTGCGCCGCCCCCGCCCCGCGCGCCCCCTACCCGCCCGCCACGCCGCGCTCCTGATGGCGACGGGCTTCCTAGTACTGGCAGTGCTGGTGGCCGTCCTGTTGCAGCGACTAGTGGAGCCGCGCGCCTGA
Protein
MVGVGVAEAGGGGGGVPGDGYYGEYYPPEQYYVPPDMCPHPQQHPQHAHMCTVLPEYGGLPVVTSGTMMPPLMPPVLDENMRQYLMHQHAQHPHHAPHHQPPHHQPPHHQPPPHHQPPHHYGPTNGAGGPQHFYGAGYPAHFHHVPPHHMQHSPPPPIYQKDERTQRQYSKLKQKLERKNNNRNNGVVTDVTSGTSTPTLSPRKELNGRGGTTSGAWSEGEGSSAGASVHSDEDDTQAILELMSTARKPQVSDMTPTSALVQWNSQLPEGVPPPNLELTYDLILGDRGRYKAIYSGPSLSCRVRDLRPGCEYSVYLQIRPGAVTGATTEAVTFRAPAAPPDRVPAPKVTQRSRNSLLLRWPSAADNGARLQYYVLEMDDGDGFKEISRPRTRQHSATGLRPQTRYIFRIAAVNECGRGEWSEEITVWTYGLPPPAPAPPVLDSAASESLSLSWERRGEEEFTLQMDDIARGHGFLPVYNGPDRTHVCKGLRRASDYRFRLCCETTDGQGPYSTDVTYRTLPERPGAPGRPSAKGKIHSRAFRLRWEPPSDDGGAPVEQYTLELDAGDGFQSAYSGPDREAHCDRLQPGTDYRARVRCLNSAGESDWSSTETVTTDATIPAACDAPEPTSEPRATTLPLRWKPPSCTGGTPLTEYRVEVANAQGIARLAHAGLETECIVRELSPGRPYRVWVTACNRVGSGPPSSVLEFETAAAPPDAPDAPIANVQSPNAVQLEWTAPPDNGANIIDYRVEMSAANVDDAYTEIYRGSETNCSIDRLTPFTPYFFRVCATNVAGRGAWSAVRDVLTPRAPPAAPSALRYEATADSLRLQWRAPACHGADILQYRVEVGDAAFDTEGPTPERLVEGLEPDVSYRVRVAALNELGLGDWSEESRARTRPPPPVPPILRCSPPAHNHLRLEWDATGTEGVHYCVEMRAPDGREFRPVYRGSARSCKVKKLRESCAYAFRIRAADERGGRGPWSEPVTFETGSAPPPAPRAPVLQLLAPRLALVQWDVIDDAEYVLQSARGKDALFKQVYAGRDTQFRLEELEAGGEYVVRVCAVRGGLAGAWSAPARLLVPVPAAAPRVRRPRPARPLPARHAALLMATGFLVLAVLVAVLLQRLVEPRA

Summary

EMBL
BABH01004844    AGBW02010325    OWR48716.1    KQ459601    KPI93958.1    KQ460855    + More
KPJ11924.1    ODYU01005662    SOQ46749.1    KK852863    KDR14794.1    GEZM01015297    JAV91772.1    GEZM01015298    JAV91771.1    GEZM01015296    JAV91773.1    GEZM01015299    JAV91770.1    GFDF01006804    JAV07280.1    AJWK01007111    AJWK01007112    LJIG01022450    KRT80542.1    KQ971342    KYB27709.1    KYB27708.1    DS235093    EEB11871.1    GEDC01017129    JAS20169.1    APGK01052459    APGK01052460    KB741212    ENN72732.1    NEDP02005419    OWF41154.1    KK119237    KFM75154.1    JH816951    EKC40245.1    GDIP01058680    JAM45035.1    GDIQ01126866    JAL24860.1    GDIP01177860    GDIP01050729    LRGB01001115    JAM52986.1    KZS13524.1    GDIP01237814    JAI85587.1    GDIP01226506    JAI96895.1    KB202793    ESO87946.1    AMQN01015903    KB312336    ELT87402.1    GDIP01080724    JAM22991.1    GDIP01205315    JAJ18087.1    LJIJ01002841    ODM89167.1    GDIQ01253628    GDIQ01253627    JAJ98096.1    GDIQ01169154    JAK82571.1    GDIQ01253625    JAJ98099.1    GDIP01234409    JAI88992.1    GDIQ01222085    GDIQ01222084    JAK29640.1    GDIQ01253626    JAJ98098.1    GDIQ01222083    JAK29642.1    GDIQ01224438    GDIQ01130861    JAL20865.1    GDIQ01130860    JAL20866.1    GDIQ01236621    JAK15104.1    GDIQ01224437    JAK27288.1    GDIQ01125166    JAL26560.1    GDIQ01236622    GDIQ01233073    GDIQ01125165    JAK15103.1    GDIQ01224439    GDIQ01200688    GDIQ01043443    JAN51294.1    GDIQ01132166    GDIQ01132165    JAL19561.1    GDIQ01223177    JAK28548.1    GDIQ01223176    JAK28549.1    GDIQ01243481    GDIQ01243480    GDIQ01243479    GDIQ01242180    GDIQ01242177    GDIQ01240775    GDIQ01240774    GDIQ01240772    GDIQ01239072    GDIQ01239027    JAK08246.1    GDIQ01146712    JAL05014.1    GDIQ01266206    GDIQ01237726    GDIQ01237725    GDIQ01146711    JAL05015.1    GDIQ01213931    GDIQ01213878    JAK37847.1    GDIQ01243477    GDIQ01242179    GDIQ01240773    GDIQ01239073    JAK08248.1    GDIQ01155848    JAK95877.1    GDIQ01199383    GDIQ01082775    JAN11962.1    GDIQ01243478    GDIQ01242178    JAK08247.1    GDIQ01197835    JAK53890.1    GDIQ01244722    GDIQ01145456    GDIQ01145454    GDIQ01144055    GDIQ01126865    GDIQ01126864    JAL07671.1    GDIQ01145455    JAL06271.1    GDIQ01084224    JAN10513.1    GDIQ01179691    JAK72034.1    GDIQ01223178    JAK28547.1    GDIQ01164147    JAK87578.1    GDIQ01231276    GDIQ01231275    JAK20450.1    GDIQ01164148    JAK87577.1    GDIQ01085779    JAN08958.1    GDIQ01140609    JAL11117.1    GDIQ01142605    GDIQ01140608    JAL09121.1    GDIQ01218035    GDIQ01217131    GDIQ01189138    GDIQ01189137    GDIQ01189136    GDIQ01187744    GDIQ01187743    GDIQ01184449    GDIQ01184448    GDIQ01157995    JAK62587.1    GDIQ01250873    JAK00852.1    GDIQ01174488    JAK77237.1    GDIQ01165499    GDIQ01165498    GDIQ01165497    GDIQ01159796    JAK86226.1    GDIQ01219176    GDIQ01206631    GDIQ01203537    GDIQ01201938    GDIQ01201937    GDIQ01201936    GDIQ01138511    GDIQ01117217    GDIQ01117216    GDIQ01117215    GDIQ01115966    GDIQ01115965    JAK49789.1    GDIQ01082776    JAN11961.1    GDIQ01128309    JAL23417.1    GDIQ01196340    JAK55385.1    GDIQ01129561    JAL22165.1    GDIQ01225632    GDIQ01099680    JAL52046.1    GDIQ01207983    GDIQ01101023    GDIQ01101022    GDIQ01101021    JAL50703.1    GDIQ01235471    GDIQ01197834    GDIQ01081225    JAK16254.1    GDIQ01084225    JAN10512.1    GDIQ01084226    JAN10511.1    GDIQ01138512    JAL13214.1    GDIQ01244725    GDIQ01244724    GDIQ01244723    JAK07000.1    GDIQ01225631    JAK26094.1    GDIQ01174489    JAK77236.1    GDIQ01162804    JAK88921.1    GDIQ01189135    GDIQ01187742    GDIQ01110465    JAK62590.1    GDIQ01029548    JAN65189.1    GDIQ01178237    GDIQ01176638    GDIQ01174490    GDIQ01062942    GDIQ01061087    JAK73488.1    GDIQ01094522    JAL57204.1    GDIQ01181087    JAK70638.1   
Pfam
PF00041   fn3
Interpro
IPR003961   FN3_dom        + More
IPR013783   Ig-like_fold       
IPR036116   FN3_sf       
SUPFAM
SSF49265   SSF49265       
Gene 3D
PDB
2CRM     E-value=1.85455e-20,     Score=249

Ontologies

Topology

Length:
1127
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.67113
Exp number, first 60 AAs:
0.00666
Total prob of N-in:
0.00084
outside
1  -  1096
TMhelix
1097  -  1119
inside
1120  -  1127
 
 

Population Genetic Test Statistics

Pi
196.904469
Theta
165.949003
Tajima's D
0.665947
CLR
0.509222
CSRT
0.564921753912304
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 RGEEEFTIQMDDIAR 100.00 8e-07
26822097 VWVTACNR 100.00 8e-05
26822097 IAHAGIETECIVR 100.00 1e-04
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