SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01819
Pre Gene Modal
BGIBMGA005985
Annotation
PREDICTED:_plexin-C1_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 2.124
 

Sequence

CDS
ATGGCTACTTTCATAACTGTGTTAGTCATAACATTGTGGCTTCGGTGTACAAGAGTTCAATGTAATGATTTAATATCTCAGTACCCTATTTTAAAGAATGAAACGTACCAGTTTTACCATTTAGCAGTGGACAAAATAAGTGGTCAAGTGTACGCAGGTTCATTAAATTGGCTCCATCAACTTAGTCCTGACTTGAAACCAATTCACGTAGTGAAAACTGGACCGAAACCTGATAATCCTATGTGCCATGCCAGTGGTTGTGATCCAGACGTGACAACAACAATAACCGACAACGTGAACAAAATTTTGGTCATCGACCAAGAATCAAGAATCGTGATTGCTTGTGGATCTATCGCTCAAGGCTCTTGTCACAAATATAAGCTTGGAGATCTGTCAACGGAACCGGAATTTGTAGCCGTGAGTGTTGCTGCTAACGATGCTGAAGCTTCAACCTATGCCTTTATTGGTCCAGAGAGGTATAACTCATTAGACAGATCTAATGTTCTTTATGTTGGAACAACATTTACAAACAAAGGAGAATACAGGCATGATGTACCTGCAATTTCTAGTCGAAATTTGATGACACTAGGACTTGCACAGCTGACATTCTCCAAACAGAGTATGCTGCAAATTGATGTAAAATACAGAGATAATTTCCTAGTGCATTATGTGTATGGTTTTAATGCCAGTGACTATGCCTATTTTTTATTAATCCAAAAACATTCTCACCTCGCTGGTAATGAAGAACTAGGCTATGTATCTCGTTTAGCCCGTACATGTGTCAATGATGACAATTATAACAGTTACACAGAAGTTACCTTGGAGTGTCATGTAAGAGAAGAAAATATTAATGGTAAGAGTGAAATTGTCAATTATAATCTTGTTCAAGATGCTAAAATTGCAAAAGCTGGAACTAATTTAGCAATGCAACTTGGAATTGAGACAGGGGCCCCAATTCTAGTTGCATTGTTTAGCCCATCCAAAAGTATATCAAATGAACCCATGACAAAGTCATCTATGTGTGTTTTTTCTTTACAAGAAATAGAAATTAAGTTTAATGAGAATGTTCACATGTGTTTCAATGGTAGTACGAAGGCACGTAATATGGGCTATATATCAGGGATGATATCTGATGGCAAATGTCCAAGCGTTGGTTCCACAGGAAATATTTTGAATTTTTGTGAGGTGGGTCTAAAAATAAGTGGTCTTTACCCAATTAGAAGCACATCAATTATCAATTGGAATGATACATTAATTACTTCAGTTGCTGTGTCAGTTACTGGATTGCATACAGTAGCATTCTTGGGTACTAGCAATGGTGTTCTAAAAAAAGTATTGATTGATGCAGATAAAGCCTTAGAATATTCTAGTGAGAAATTGCTTCCAAATGAAAAAATATTACCTGACACTACATTTTCACCATATCAGAAAACTCTATATCTGCTGGGCTCCCATAACATTGTACAAATACCAACAGAAAAATGTGCAGAACATGGAAATTGTTCTGCATGTCTTGAATCTAATGATCCTCATTGTGGATGGTGCTCCCTAGAAAAAAGGTGTACGATACAAAGCATGTGTCAGAAAGGCACATTAAGTGCACCAAGGTGGTTATCTCAGTATATTGGTCAACAGTGCATTGATTTTGAACAAATTTTACCTGATAGAATATCTGTGAATGAAGTGACAACAGTACAGCTAGCTATAAAAACTTTGCCAGAACTACCTTTTGGGGCCAAATATAAGTGTGTGTTTGGCAACGCTCCCCCGATTGATGCAGCAGTTACATCTAATGGGTTAGCTTGTCCCACACCAGATGCAAAACATAGACCTAAAATTCCAAGTAATCAAGATCATGTCAATGTGCCTCTATCAGTTCATTCATCAGAAACAAATAAAGATTTTGTTTCGCGGAACTTTGCTTTCTATGATTGTTCCAGACACTTAACATGTCATTCTTGTATTACGAGCGAGTGGGCATGTAATTGGTGTATTTATGATAATGTGTGCACACATGATACCTCAGCTTGTCAAAGAACCATCATTAGTGGTGAAAAGAATCCAACCAAACTGCTTAATCATGGTATTGGACATTGTCCTAGAATAAGGCAGTACAAAAAGCCAATTCTTTTGCCCTACAATGTTCCTAAAGAATTAGAACTGGAAGTTGAAAATCTGCCTCATCTGCAACCTGGTCACATAGGTTTCCAGTGTGTTGTTACAATTGAGCAAGCAAACATGATATTGCCTGCACGAATAGAATCAAATCATTACATTGTTTGTGATAAAACCACTTACTCATATGAAGAAGATGTAGGTGAATATAATGTAAGTGTAAAGGTTGTTTGGAATCATAATCATTACATAGACACAGTTATGATAACGTTATATAAATGTGAAATACTAGGATCACACAGAGAACATGCTGATTGTTCACTTTGTATCACTCGGAATTCTATATATCAATGTACTTGGTGTGGGAATTCATGTTCATATAGTGAATCTTGTTTAGAAACTCCTGTAACAGAATGCCCAAAACCTAGAATTGATATGATAAAACCATTAAGTGGACCCATAGAAGGTGGCACAACTGTAACTATAGAAGGAAGTAATCTTGGATTAAGAGTTGAAGAAGTCACAGGAAAAGTTCGGATTGGTGATGTTTTATGTCAAATTGTTGATTTTGAAGTATCAGTTAGCATAACTTGTCAAACAGGACCATCCAATCATTCTACAGTAGCCCCTGTGATAGTTGAGAATGACTCAGGATATACTGAATCATCTGTTATGTTTAGTTATGAAAATATAAAGTTGCAAGCAATTTATCCCACATTAGGGCCAGTTTCAGGTGGGACACAATTAGCTATTGGAGGAGAACATCTTAATATTGGATCTTCTGTCAAGGCATTTTTAGATGATCTACCATGCTCTGTTAATAAAACACAAACGTCCAATAGCAGACTGATATGTATAACACCTAAAGCAAACTTTCCACACATTATTCACACGCTGACAGTCATTATAGACAATGCTAACAGAACTTTAAAAGGTGACCTTTTTAACTATACTGCTGATCCTACCATAATGGAAATAAAGCCTTTAAAAAGTTTTGTATCTGGTGGTAGAATGATTACTGTGCATGGTACTAATTTACATACTATTCAGAAACCTTTAATGAAATTGTATTATGCAAATGAAGAAATCCCAGTTAATCATACAGAATGTAAAGTTTTGAGCTCAAATCAAATGGAATGTCCAAGCCCAGCAATAAATACAAAGTATGTAGAGATTCTGCAAGCAACAAAATCACAAACCAGCACTCCTCAAATAGCAATGAAAGTAAGTTTTGTGATGGATCATGTGGAAACAATGCAAGATCTTAAAAAATATTTCAATCCTCCACGAACACATATGGTATTTGTTGAAGATCCACATGTATATCAGTTTCCTAATAGAATAAAATCATATAAAGGTGACCCACTAGTAATAGAAGGCGAAAATCTGATAAGAGCCAGTGATGAAACCGATGTTGTTGTAACTATCGGCACACAACCATGTAATGTGACCAGCTTAACAATGCAACAGCTCCTATGCACACCTCCCGAAGTACAACCATCCAATACAGACGAAAACGGAATGCAAACCACAGAGAAAAGTCTACCATTAGTAGTTGTCAAAGTTGGAAAGAACTTGCGTTTTCCAATAGGCTATCTACATTACGAGCTTTTGAGGAATTACAATTTTCCCCCAGAAGCTATCGCAAGCATTGCGGCTGGAACTTTTTTCTTGGTACTAATATTTATGATTGTGTTGGTGATGTACAGACGCCGAAGTACGAAAGCCGAGAGGGAATATAAAAGAATACAAATTCAAATGGATACATTGGAAAGCAATGTACGATTAGAATGCAAGTTAGCATTTGCAGAACTGCAGACCGATATGTCAGATTTGGCAGCTGATTTAGAACACTCAGGTATTCCAACATTAGACCATGTTAATTATGTGATGAAAGTATTTTTTCCGGGAGTCTCCGATCATCCCATATTGAATGTTCAAAGACAGTTCATTAATGCTCCACGGACCAATTATGATGCAGCTATGTTTCAATTCGAGCAACTATTAAATAATAAGTGTTTTTTGCTGTCATTTATAGACACATTGGAAGCGCAGAAATCTTTTAACATAAGAGACAAAGTAAATGTTGCTTCGCTTTTAATGATTATATTAATGGGTAAAATGGAATATGCTACAGACATCCTCAAATCTTTGTTGTTACGGCTCATTGATAAATCAGTTTGCAGTAAACATCCACAACTTATGTTAAGAAGAACGGAAAGTGTTGTAGAAAAAATGTTGACGAATTGGATGGCTTTATGTATGTATTACTACTTAAAAGATTATGCTGGATCTTCATTATTTTTGTTATTTAAAGCTATAAAACATCAAATCGAAAAGGGAGTCGTCGATGCTATAACACACGAAGCTCGTTACTCTTTATCAGAAGAGAAGCTATTAAAAGAGCAGATTGACTATCAGACTGTAACCCTACACATTGTTCAAGACGAATTTGATGAAAAAGTTCAGTGTAAAGTATTAGACTGTGACAGTATATCACAAGTAAAATCGAAGATACTAGATGCTCTCTTCAAAAATACTCCATTTTCACTCAGACCTGCTGTCCATGAAGTTGATCTCGAGTGGCGTCATGGAAGAGGTGGACATGTTACGCTTCAAGACGAGGATGTCACTACTAAAACATTAAATGGATGGCGAAAATTAAATACATTAGCCCATTATGGCGTTAAGGAATCCGCCATAATGTCGTTAATATCACGACAAAACGATAGTTTCAACACACCTTATAAAATACCATGTAAAAATTGTACAGGAATATACTGTTCGAATTCACATATACGCGTATACAATAGCGACATTACTGATCAAAACGTGCATTATTATCATTTGGTAAAACCGATCGAATATCAACATATTGTCAACAAATCATCTGAGCACAGTCACAAAGCCATTCCAGAAATATTTCTCACAAGGCTGCTATCTACTAAAGGCACAGTACATAAATTTGTGGACGATTTCTTTGGCACCATACTCACAGTAAACGAAGTACTGCCGCCCGCAGTGAAATGGCTATTTGATCTATTTGATGATGCAGCAAGAGCTCATGGTATTGTCAATCCAGAAGTCGTCCATGCTTGGAAGTCTAACAGTTTGCCACTAAGATTTTGGGTGAATCTCATTAAAAATCCTGATTTCATTTTTGATATAAATAAAACCGCCACTGTAGACTCCTCTCTGTCCGTGATTGCGCAAACTTTTATGGATGCATGTTCATTATCAGAACATAGACTTTGTAAAGATTCGCCGTCAAACAAATTACTCTTTGCAAAAGACTTACCCACTTATAGAGATATGGTCATAAGGTTTTATCAAGCAGTTTCTCAATTACCACAAGTTACAGACCAAGAAATAAGCACGTCTATGCAACAACTCTCTGTGGAACAATTAAACGAGTTTGATACTCTATCAGCCTTAAAAGAGTTATATATTTATGTCAGTAAATATAGAGAACAAATTATGTTAGGATTAGAAAATAAAACACACTTAGCTCGTAAATTAGAAAATACAGCGTGCACCATGGAAGGTGATCCTGCGTCCATGTGCTGA
Protein
MATFITVLVITLWLRCTRVQCNDLISQYPILKNETYQFYHLAVDKISGQVYAGSLNWLHQLSPDLKPIHVVKTGPKPDNPMCHASGCDPDVTTTITDNVNKILVIDQESRIVIACGSIAQGSCHKYKLGDLSTEPEFVAVSVAANDAEASTYAFIGPERYNSLDRSNVLYVGTTFTNKGEYRHDVPAISSRNLMTLGLAQLTFSKQSMLQIDVKYRDNFLVHYVYGFNASDYAYFLLIQKHSHLAGNEELGYVSRLARTCVNDDNYNSYTEVTLECHVREENINGKSEIVNYNLVQDAKIAKAGTNLAMQLGIETGAPILVALFSPSKSISNEPMTKSSMCVFSLQEIEIKFNENVHMCFNGSTKARNMGYISGMISDGKCPSVGSTGNILNFCEVGLKISGLYPIRSTSIINWNDTLITSVAVSVTGLHTVAFLGTSNGVLKKVLIDADKALEYSSEKLLPNEKILPDTTFSPYQKTLYLLGSHNIVQIPTEKCAEHGNCSACLESNDPHCGWCSLEKRCTIQSMCQKGTLSAPRWLSQYIGQQCIDFEQILPDRISVNEVTTVQLAIKTLPELPFGAKYKCVFGNAPPIDAAVTSNGLACPTPDAKHRPKIPSNQDHVNVPLSVHSSETNKDFVSRNFAFYDCSRHLTCHSCITSEWACNWCIYDNVCTHDTSACQRTIISGEKNPTKLLNHGIGHCPRIRQYKKPILLPYNVPKELELEVENLPHLQPGHIGFQCVVTIEQANMILPARIESNHYIVCDKTTYSYEEDVGEYNVSVKVVWNHNHYIDTVMITLYKCEILGSHREHADCSLCITRNSIYQCTWCGNSCSYSESCLETPVTECPKPRIDMIKPLSGPIEGGTTVTIEGSNLGLRVEEVTGKVRIGDVLCQIVDFEVSVSITCQTGPSNHSTVAPVIVENDSGYTESSVMFSYENIKLQAIYPTLGPVSGGTQLAIGGEHLNIGSSVKAFLDDLPCSVNKTQTSNSRLICITPKANFPHIIHTLTVIIDNANRTLKGDLFNYTADPTIMEIKPLKSFVSGGRMITVHGTNLHTIQKPLMKLYYANEEIPVNHTECKVLSSNQMECPSPAINTKYVEILQATKSQTSTPQIAMKVSFVMDHVETMQDLKKYFNPPRTHMVFVEDPHVYQFPNRIKSYKGDPLVIEGENLIRASDETDVVVTIGTQPCNVTSLTMQQLLCTPPEVQPSNTDENGMQTTEKSLPLVVVKVGKNLRFPIGYLHYELLRNYNFPPEAIASIAAGTFFLVLIFMIVLVMYRRRSTKAEREYKRIQIQMDTLESNVRLECKLAFAELQTDMSDLAADLEHSGIPTLDHVNYVMKVFFPGVSDHPILNVQRQFINAPRTNYDAAMFQFEQLLNNKCFLLSFIDTLEAQKSFNIRDKVNVASLLMIILMGKMEYATDILKSLLLRLIDKSVCSKHPQLMLRRTESVVEKMLTNWMALCMYYYLKDYAGSSLFLLFKAIKHQIEKGVVDAITHEARYSLSEEKLLKEQIDYQTVTLHIVQDEFDEKVQCKVLDCDSISQVKSKILDALFKNTPFSLRPAVHEVDLEWRHGRGGHVTLQDEDVTTKTLNGWRKLNTLAHYGVKESAIMSLISRQNDSFNTPYKIPCKNCTGIYCSNSHIRVYNSDITDQNVHYYHLVKPIEYQHIVNKSSEHSHKAIPEIFLTRLLSTKGTVHKFVDDFFGTILTVNEVLPPAVKWLFDLFDDAARAHGIVNPEVVHAWKSNSLPLRFWVNLIKNPDFIFDINKTATVDSSLSVIAQTFMDACSLSEHRLCKDSPSNKLLFAKDLPTYRDMVIRFYQAVSQLPQVTDQEISTSMQQLSVEQLNEFDTLSALKELYIYVSKYREQIMLGLENKTHLARKLENTACTMEGDPASMC

Summary

EMBL
BABH01004838    BABH01004839    JTDY01001005    KOB75139.1    NWSH01000024    PCG80635.1    + More
KQ458692    KPJ05490.1    KQ460855    KPJ11919.1    ODYU01001165    SOQ36993.1    GEZM01064511    JAV68747.1    KQ971307    KYB29594.1    KZ288315    PBC28314.1    KQ435885    KOX69588.1    KQ414663    KOC65261.1    GL888243    EGI64046.1    ADTU01023713    GL438820    EFN68429.1    KQ976691    KYM77938.1    KQ981965    KYN31861.1    QOIP01000003    RLU25010.1    KQ434999    KZC13361.1    KQ982944    KYQ48992.1    KQ979608    KYN20453.1    KQ977835    KYM99374.1    KQ760801    OAD58967.1    KK107273    EZA53760.1    APGK01047058    KB741077    KB632384    ENN74095.1    ERL94226.1    GBYB01003467    GBYB01011229    JAG73234.1    JAG80996.1    AAZX01003306    GDHC01000142    JAQ18487.1    GEDC01025791    JAS11507.1    NNAY01000262    OXU29647.1    GGMR01003018    MBY15637.1    GL449382    EFN82927.1    GGMS01003556    MBY72759.1    GBBI01002558    JAC16154.1    ABLF02030082    ACPB03001689    ACPB03001690    GDIP01193060    JAJ30342.1    GDIQ01038292    JAN56445.1    GDIP01059028    JAM44687.1    GDIP01239007    GDIP01239006    GDIP01237712    GDIP01237711    GDIP01225156    GDIP01216058    GDIP01209108    GDIP01209107    GDIP01201911    GDIP01200718    GDIP01200717    GDIP01152219    GDIP01111169    GDIP01109469    GDIP01050580    GDIP01050579    GDIP01038681    JAJ14295.1    GDIP01230860    GDIP01230859    GDIP01219658    GDIP01218206    GDIP01185468    GDIP01184214    GDIP01178164    GDIP01165810    GDIP01163411    GDIP01153414    GDIP01136868    GDIP01124768    GDIP01124767    GDIP01123815    GDIP01120815    GDIP01095522    GDIP01095521    GDIP01092922    GDIP01062876    GDIP01061124    GDIP01059027    GDIP01051893    GDIP01051892    GDIP01044083    GDIP01044082    GDIP01041529    GDIP01040479    JAI92541.1    GDIP01199112    GDIP01199111    GDIP01122815    GDIP01112423    GDIP01112422    GDIP01094424    GDIP01094423    GDIP01088725    GDIP01088724    GDIP01087521    GDIP01085275    GDIP01083471    JAM09292.1    GDIP01236908    GDIP01234256    GDIP01145673    GDIP01145672    GDIP01072627    GDIP01072626    GDIP01071374    GDIP01071373    GDIP01069676    JAM31088.1    GDIP01188268    JAJ35134.1    GDIP01160866    JAJ62536.1    GDIP01205812    GDIP01203608    JAJ19794.1    GDIP01107218    JAL96496.1    GDIP01158915    JAJ64487.1    GDIP01104568    JAL99146.1    GDIP01229408    JAI93993.1    GDIP01104567    JAL99147.1    UFQT01001285    SSX29839.1    UFQS01000440    UFQT01000440    SSX03984.1    SSX24349.1    GDIP01154669    JAJ68733.1    GDIQ01049541    JAN45196.1    DS235022    EEB10617.1    GDIP01044084    JAM59631.1    GDIQ01067729    JAN27008.1    GL732606    EFX71800.1    GDIQ01007314    JAN87423.1    GDIP01014313    JAM89402.1    GDIQ01202078    JAK49647.1    GDIP01197868    JAJ25534.1    GDIP01178165    JAJ45237.1    CVRI01000043    CRK95908.1    GBHO01045251    JAF98352.1    GDIP01188309    JAJ35093.1    CM000831    CH940665    ACY70487.1    EDW71120.1    GDIP01195858    GDIP01195813    JAJ27589.1    CM002916    KMZ07131.1    GDIP01079123    JAM24592.1    GDIP01193059    JAJ30343.1    GDIP01225157    GDIP01120767    JAL82947.1    GDIP01194659    GDIP01194658    JAJ28744.1    GDIQ01074683    JAN20054.1    GDIQ01071883    JAN22854.1    CH480867    EDW53705.1    GDIQ01074680    GDIQ01071882    JAN20057.1    GDIQ01074682    JAN20055.1    GDIP01081574    JAM22141.1    GDIQ01074681    JAN20056.1    GDIQ01052437    JAN42300.1    GDIQ01185036    JAK66689.1    GDIP01101669    JAM02046.1    GDIP01167311    JAJ56091.1    GDIP01101670    JAM02045.1    GDIP01165011    JAJ58391.1    GDIQ01054187    JAN40550.1    GDIP01252452    JAI70949.1    GDIP01140368    JAL63346.1    GDIP01234257    JAI89144.1    GDIQ01214087    JAK37638.1    GDIQ01214086    JAK37639.1    GDIP01234258    JAI89143.1    LBMM01005008    KMQ91919.1    GDIP01171161    JAJ52241.1    GDIP01171160    JAJ52242.1    GDIP01171159    JAJ52243.1    GDIP01171158    JAJ52244.1   
Pfam
PF08337   Plexin_cytopl        + More
PF18020   TIG_2
PF17960   TIG_plexin
PF01403   Sema
PF01437   PSI
PF01833   TIG
Interpro
IPR014756   Ig_E-set        + More
IPR002909   IPT_dom       
IPR041019   TIG1_plexin       
IPR002165   Plexin_repeat       
IPR013548   Plexin_cytoplasmic_RasGAP_dom       
IPR008936   Rho_GTPase_activation_prot       
IPR016201   PSI       
IPR013783   Ig-like_fold       
IPR036352   Semap_dom_sf       
IPR001627   Semap_dom       
IPR031146   Invert_Plexin-B       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR031148   Plexin       
IPR041362   TIG2_plexin       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001936   RasGAP_dom       
SUPFAM
SSF81296   SSF81296        + More
SSF48350   SSF48350       
SSF101912   SSF101912       
SSF57184   SSF57184       
Gene 3D
PDB
3RYT     E-value=8.36286e-172,     Score=1556

Ontologies

Topology

SignalP
Position:   1 - 21,         Likelihood:  0.982369
 
 
Length:
1893
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.19061
Exp number, first 60 AAs:
0.00455
Total prob of N-in:
0.00504
outside
1  -  1251
TMhelix
1252  -  1274
inside
1275  -  1398
TMhelix
1399  -  1417
outside
1418  -  1893
 
 

Population Genetic Test Statistics

Pi
190.69763
Theta
167.525151
Tajima's D
0.468466
CLR
0.330235
CSRT
0.507024648767562
Interpretation
Uncertain
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